Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002784.1

Orthogroup ID

OG0013781

Physical Location & Seq

Genomic Coordinates Forward (+)

193323 .. 193889

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002784.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgtttgatcatagagctgatcccgagtacgagaaaggggcatggaattttgtgaaaacggtcacaaggaacctgggaaaccctgaaatgatcttatgtccttgcatagattgtcgcaatgtagatcatcagcatggcagtattgttgttgaacatttggttacaaggggaatggaggccaagtacaaacaaagaaaagattggtatgagcatggggagcagacaattaatggtcataaaaatgaggaagtggtcaatgatgagatatatgagttatttaaagctgcccaatttttggatcaagactatatcaagcctactgagtttgttaatgaagattgtgttgagcccactgaagacatacatgatgatgatttcaaagcaaaactagaagatgcagaaactcctttgtacccgaattgttcaaactataacaagttatcagccattgtagctttatatcgacttaaaactcagagtgggtggtctaataagagttttaacgagcttcttgagacattgccagacatgctcccaaaggacaatgtacttcagaagtcgatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transpos_assoc Transposase_21

Protein Analysis

188

Amino Acids

21.92

Weight (kDa)

4.86

Isoelectric Point (pI)

23.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013781)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001438.1_g000056 Rmu_sc0001499.1_g000048 Rmu_sc0002784.1_g000045
rosa_roxburghii	Rroxscaffold_1G00058890
rosa_samantha	Rh1AG098200 Rh1CG232700 Rh2CG239500 Rh4AG198500 Rh4AG416400 Rh4BG427700 Rh4CG442600 Rh4DG423500 Rh5AG490000 Rh5AG490100 Rh6BG053000 Rh6BG053100 Rh6DG120700 Rh7CG255800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	295
AclWI	GGATC	2 cut(s)	14, 306
AcsI	RAATTY	1 cut(s)	46
AcuI	CTGAAG	2 cut(s)	375, 536
AfaI	GTAC	4 cut(s)	29, 185, 413, 549
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	3 cut(s)	152, 379, 426
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	4 cut(s)	17, 284, 455, 508
AluI	AGCT	4 cut(s)	17, 284, 455, 508
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	2 cut(s)	14, 306
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	46
AseI	ATTAAT	1 cut(s)	228
AvaI	CYCGRG	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	74
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	389
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse3DI	GCAATG	2 cut(s)	124, 518
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	2 cut(s)	124, 518
BseMII	CTCAG	2 cut(s)	312, 488
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	509
BsnI	GGCC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	5 cut(s)	7, 19, 90, 124, 298
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	2 cut(s)	313, 487
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	2 cut(s)	14, 306
BsrDI	GCAATG	2 cut(s)	124, 518
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	5 cut(s)	7, 19, 90, 124, 298
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	321, 474
BstKTI	GATC	5 cut(s)	10, 22, 93, 127, 301
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	5 cut(s)	7, 19, 90, 124, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 452, 529
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	532
BstSCI	CCNGG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	351
Csp6I	GTAC	4 cut(s)	28, 184, 412, 548
CviAII	CATG	5 cut(s)	42, 134, 212, 365, 529
CviJI	RGCY	8 cut(s)	17, 179, 284, 316, 349, 446, 455, 508
CviKI_1	RGCY	8 cut(s)	17, 179, 284, 316, 349, 446, 455, 508
CviQI	GTAC	4 cut(s)	28, 184, 412, 548
DdeI	CTNAG	2 cut(s)	321, 474
DpnI	GATC	5 cut(s)	9, 21, 92, 126, 300
DpnII	GATC	5 cut(s)	7, 19, 90, 124, 298
DraI	TTTAAA	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	351
Eco57I	CTGAAG	2 cut(s)	375, 536
Eco88I	CYCGRG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	5 cut(s)	45, 137, 215, 368, 532
FatI	CATG	5 cut(s)	41, 133, 211, 364, 528
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	285
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	179
Hin1II	CATG	5 cut(s)	45, 137, 215, 368, 532
Hpy188I	TCNGA	2 cut(s)	477, 555
Hpy188III	TCNNGA	3 cut(s)	23, 302, 512
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	105, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 452, 529
HpyF3I	CTNAG	2 cut(s)	321, 474
Hsp92II	CATG	5 cut(s)	45, 137, 215, 368, 532
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	5 cut(s)	7, 19, 90, 124, 298
LmnI	GCTCC	2 cut(s)	217, 537
LpnPI	CCDG	4 cut(s)	59, 86, 96, 537
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	2 cut(s)	61, 160
MalI	GATC	5 cut(s)	9, 21, 92, 126, 300
MboI	GATC	5 cut(s)	7, 19, 90, 124, 298
MboII	GAAGA	3 cut(s)	347, 368, 404
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	4 cut(s)	46, 225, 290, 418
MnlI	CCTC	2 cut(s)	169, 238
MseI	TTAA	5 cut(s)	228, 279, 330, 468, 501
MslI	CAYNNNNRTG	3 cut(s)	132, 240, 369
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	3 cut(s)	217, 452, 529
NdeII	GATC	5 cut(s)	7, 19, 90, 124, 298
NlaIII	CATG	5 cut(s)	45, 137, 215, 368, 532
NlaIV	GGNNCC	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	532
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	286
PshBI	ATTAAT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	71
RsaI	GTAC	4 cut(s)	29, 185, 413, 549
RsaNI	GTAC	4 cut(s)	28, 184, 412, 548
RseI	CAYNNNNRTG	3 cut(s)	132, 240, 369
SaqAI	TTAA	5 cut(s)	228, 279, 330, 468, 501
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	5 cut(s)	7, 19, 90, 124, 298
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	5 cut(s)	19, 75, 286, 457, 510
SfaNI	GCATC	1 cut(s)	385
SmiMI	CAYNNNNRTG	3 cut(s)	132, 240, 369
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	4 cut(s)	46, 225, 290, 418
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	2 cut(s)	463, 560
TasI	AATT	4 cut(s)	46, 225, 290, 418
TatI	WGTACW	2 cut(s)	183, 547
Tru1I	TTAA	5 cut(s)	228, 279, 330, 468, 501
Tru9I	TTAA	5 cut(s)	228, 279, 330, 468, 501
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	358
Van91I	CCANNNNNTGG	1 cut(s)	295
VspI	ATTAAT	1 cut(s)	228
XapI	RAATTY	1 cut(s)	46
XceI	RCATGY	1 cut(s)	532
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.