Rroxscaffold_1G00058890

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013781
Physical Location & Seq
Reverse (-)
80843509 .. 80844313
805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058890.1

Sequence Viewer

Length: 480 bp
ATGATCTTATGTCCTTGCATAGATTGTCGCAATGTAGATCATCAGCATGGCAGTATTGTTGTTGAACATTTGGTTACAAGGGGAATGGAGGCCAAGTACAAACAAAGAAAAGATTGGTATGAGCATGGGGAGCAGATAATTAATGGTCATAAAAATGAGGAAGTGGTCAATGATGAGATATATGAGTTATTTAGAGCTGCCCAATTTTTGGATCAAGACTATATCAAGCCTACTGAGTTTGTTAATGAAGATTGTGTTGAGCCCACCGAAGACATACATGATGATGATTTCATAGCAAAACTAGAAGATGCAGAAACTCCTTTGTACCCGAATTGTTCAAACTACAACAAGTTATCAGCCATTTTAGCTTTATATCGACTTAAAACTCAGAGTGGGTGGTCTAATAAGAGTTTTAACGAGCTTCTTGAGACATTGCCGGACATGCTCCCAAGATTGAAGATGCTATTGGTACTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

159

Amino Acids

18.6

Weight (kDa)

4.77

Isoelectric Point (pI)

29.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 2 - 44 1.6e-09 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 208
AclWI GGATC 1 cut(s) 219
AfaI GTAC 3 cut(s) 98, 326, 471
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 3 cut(s) 65, 339, 457
AjuI GAANNNNNNNTTGG 1 cut(s) 449
AluBI AGCT 3 cut(s) 197, 368, 421
AluI AGCT 3 cut(s) 197, 368, 421
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 1 cut(s) 219
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 197
AseI ATTAAT 1 cut(s) 141
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 302
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmsI GCATC 2 cut(s) 298, 450
BpiI GAAGAC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 446
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse3DI GCAATG 2 cut(s) 37, 431
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 2 cut(s) 37, 431
BseMII CTCAG 2 cut(s) 225, 401
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 422
BsnI GGCC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 3 cut(s) 3, 37, 211
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 2 cut(s) 226, 400
BspPI GGATC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 37, 431
BssMI GATC 3 cut(s) 3, 37, 211
BstDEI CTNAG 2 cut(s) 234, 387
BstKTI GATC 3 cut(s) 6, 40, 214
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 3 cut(s) 3, 37, 211
BstMWI GCNNNNNNNGC 3 cut(s) 130, 365, 442
BstNSI RCATGY 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 276
BsuRI GGCC 1 cut(s) 92
Csp6I GTAC 3 cut(s) 97, 325, 470
CviAII CATG 4 cut(s) 47, 125, 278, 442
CviJI RGCY 7 cut(s) 92, 197, 229, 262, 359, 368, 421
CviKI_1 RGCY 7 cut(s) 92, 197, 229, 262, 359, 368, 421
CviQI GTAC 3 cut(s) 97, 325, 470
DdeI CTNAG 2 cut(s) 234, 387
DpnI GATC 3 cut(s) 5, 39, 213
DpnII GATC 3 cut(s) 3, 37, 211
Eco24I GRGCYC 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 264
FaeI CATG 4 cut(s) 50, 128, 281, 445
FatI CATG 4 cut(s) 46, 124, 277, 441
Fnu4HI GCNGC 1 cut(s) 198
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 302
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 437
Hin1II CATG 4 cut(s) 50, 128, 281, 445
HpaII CCGG 1 cut(s) 437
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 2 cut(s) 215, 425
HpyCH4V TGCA 2 cut(s) 18, 311
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 365, 442
HpyF3I CTNAG 2 cut(s) 234, 387
Hsp92II CATG 4 cut(s) 50, 128, 281, 445
Kzo9I GATC 3 cut(s) 3, 37, 211
LmnI GCTCC 2 cut(s) 130, 450
LpnPI CCDG 1 cut(s) 450
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 2 cut(s) 298, 450
MaeI CTAG 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 73
MalI GATC 3 cut(s) 5, 39, 213
MboI GATC 3 cut(s) 3, 37, 211
MboII GAAGA 4 cut(s) 260, 281, 317, 469
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 3 cut(s) 138, 203, 331
MnlI CCTC 2 cut(s) 82, 151
MseI TTAA 4 cut(s) 141, 243, 381, 414
MslI CAYNNNNRTG 3 cut(s) 45, 153, 282
MspI CCGG 1 cut(s) 437
MwoI GCNNNNNNNGC 3 cut(s) 130, 365, 442
NdeII GATC 3 cut(s) 3, 37, 211
NlaIII CATG 4 cut(s) 50, 128, 281, 445
NspI RCATGY 1 cut(s) 445
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 1 cut(s) 199
PshBI ATTAAT 1 cut(s) 141
RsaI GTAC 3 cut(s) 98, 326, 471
RsaNI GTAC 3 cut(s) 97, 325, 470
RseI CAYNNNNRTG 3 cut(s) 45, 153, 282
SaqAI TTAA 4 cut(s) 141, 243, 381, 414
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 3 cut(s) 3, 37, 211
SduI GDGCHC 1 cut(s) 264
SetI ASST 3 cut(s) 199, 370, 423
SfaNI GCATC 2 cut(s) 298, 450
SmiMI CAYNNNNRTG 3 cut(s) 45, 153, 282
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 3 cut(s) 138, 203, 331
SspMI CTAG 1 cut(s) 302
TaqI TCGA 1 cut(s) 376
TasI AATT 3 cut(s) 138, 203, 331
TatI WGTACW 1 cut(s) 96
Tru1I TTAA 4 cut(s) 141, 243, 381, 414
Tru9I TTAA 4 cut(s) 141, 243, 381, 414
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 261, 280
Van91I CCANNNNNTGG 1 cut(s) 208
VspI ATTAAT 1 cut(s) 141
XceI RCATGY 1 cut(s) 445
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.