Rmu_sc0001838.1_g000001

Secretory carrier-associated membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001838.1
OG0003098
Physical Location & Seq
Reverse (-)
968 .. 7913
6946 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1218 bp
atgccgagaatttccttggagtacgggattggtgttctgggaggggccagcttgtgcatctctctcttctattcagcttccattaaggccaaggcggtgcgcctcgatcgagttcgatttatgcacaagaaaaagcaggccgaggtggcggagatgcgagccgtgagggctgatgagcgggcggtcagggaggaggaacgggccgtcagggcagaggagcgagccgtgaaggctgagggaagagccgtcaaggctgaggagagggccgagaggacagatagaagaagtagaactgatggacatttctttgaagaggaggaagtcaatccgttctcggtgagtgtccttttgcgattctctggttctggttgtgatgtatttggatgcgatgatttgttttggattctcagtgaaattgaagtgaatcgtgttaagtttgtagctattcagtttgaattgattgtaaaacggaaagaggatgctgcagcacgagctggaattgttctggaggaaaaaaattggcctcctttctttccacttatccatcatgatattgcaaacgaaataccaattcatttacaaagggtgatgtatgttgcatttacaacatggttaggaattgttgcttgcctattctggaatataatagctgtgactactgcctggattaagggtgaaggggtgaaaatttggttccttgcggttatatatttcattgctggggcccctggatcttatgtgtcgtggtaccgtcctctttgctgtgtgttcaggtctgagagtgctttgaagtacagatggtttttcatgtttctgatccacattggcttctgcatctttgctgcggttgctccccctataatgttcaaaggaaaatctctcattggcgttctggctgcaattgatattcgaagtgatctttggttaggttgttctactgtatcggattcggcatgttctgtcttgaatcagtgcttagcatctggattattcagcaagtatacatgtacgtcccgggaagtggatctacattgcaatgtacatacacatatgagaattagatacacggtaatgaagacacaaactgcaatctcccacatgagaccatcaaaatcaggagaatttgcacaatgcctgaaggcgaatactgcagcgatcacttctccagtcttgaagctcctcaggcaagactgtcctcacaaaattctagagctctag

Protein Analysis

405

Amino Acids

45.82

Weight (kDa)

8.94

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAMP PF04144 171 - 304 2.2e-41 SCAMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 747
AccB1I GGYRCC 1 cut(s) 747
AccBSI CCGCTC 1 cut(s) 178
AccI GTMKAC 1 cut(s) 1001
AciI CCGC 6 cut(s) 95, 149, 178, 182, 701, 845
AclWI GGATC 3 cut(s) 739, 811, 1032
AcsI RAATTY 4 cut(s) 9, 687, 1121, 1203
AcuI CTGAAG 1 cut(s) 1157
AfaI GTAC 5 cut(s) 23, 749, 794, 1009, 1041
AfiI CCNNNNNNNGG 1 cut(s) 1021
AflIII ACRYGT 1 cut(s) 1004
AgsI TTSAA 7 cut(s) 311, 419, 455, 790, 868, 967, 1174
AjnI CCWGG 2 cut(s) 662, 727
AjuI GAANNNNNNNTTGG 2 cut(s) 904, 936
AluBI AGCT 7 cut(s) 51, 77, 443, 494, 650, 1177, 1213
AluI AGCT 7 cut(s) 51, 77, 443, 494, 650, 1177, 1213
Alw21I GWGCWC 1 cut(s) 1215
Alw26I GTCTC 1 cut(s) 1096
AlwI GGATC 3 cut(s) 739, 811, 1032
Ama87I CYCGRG 1 cut(s) 1014
AoxI GGCC 7 cut(s) 45, 87, 138, 201, 264, 521, 723
ApaI GGGCCC 1 cut(s) 727
ApeKI GCWGC 5 cut(s) 482, 485, 842, 896, 1151
ApoI RAATTY 4 cut(s) 9, 687, 1121, 1203
Asp718I GGTACC 1 cut(s) 747
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 5 cut(s) 45, 201, 264, 723, 724
AsuC2I CCSGG 2 cut(s) 1015, 1016
AsuHPI GGTGA 4 cut(s) 349, 598, 686, 694
AsuII TTCGAA 1 cut(s) 910
AvaI CYCGRG 1 cut(s) 1014
AxyI CCTNAGG 1 cut(s) 1181
BaeGI GKGCMC 1 cut(s) 727
BanI GGYRCC 1 cut(s) 747
BanII GRGCYC 2 cut(s) 727, 1215
BarI GAAGNNNNNNTAC 2 cut(s) 1011, 1043
BauI CACGAG 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 1082
Bbv12I GWGCWC 1 cut(s) 1215
BbvCI CCTCAGC 2 cut(s) 234, 255
BbvI GCAGC 5 cut(s) 469, 497, 829, 883, 1163
BccI CCATC 4 cut(s) 290, 552, 792, 1114
BceAI ACGGC 4 cut(s) 146, 188, 209, 230
BciT130I CCWGG 2 cut(s) 664, 729
BcnI CCSGG 2 cut(s) 1015, 1016
BcoDI GTCTC 1 cut(s) 1096
BfaI CTAG 2 cut(s) 1208, 1216
BfmI CTRYAG 2 cut(s) 483, 1149
BglI GCCNNNNNGGC 5 cut(s) 146, 167, 209, 230, 251
BisI GCNGC 5 cut(s) 483, 486, 843, 897, 1152
BlpI GCTNAGC 1 cut(s) 976
BlsI GCNGC 5 cut(s) 484, 487, 844, 898, 1153
Bme1390I CCNGG 4 cut(s) 664, 729, 1015, 1016
BmeT110I CYCGRG 1 cut(s) 1014
BmgT120I GGNCC 5 cut(s) 45, 201, 264, 723, 724
BmiI GGNNCC 6 cut(s) 46, 695, 724, 725, 726, 749
BmrFI CCNGG 4 cut(s) 664, 729, 1015, 1016
BmsI GCATC 6 cut(s) 66, 144, 374, 469, 843, 989
BpiI GAAGAC 1 cut(s) 1082
BpmI CTGGAG 2 cut(s) 527, 1149
Bpu10I CCTNAGC 2 cut(s) 234, 255
Bpu1102I GCTNAGC 1 cut(s) 976
Bpu14I TTCGAA 1 cut(s) 910
BpuMI CCSGG 2 cut(s) 1015, 1016
BsaI GGTCTC 1 cut(s) 1096
BsaJI CCNNGG 5 cut(s) 15, 90, 141, 727, 1014
Bsc4I CCNNNNNNNGG 1 cut(s) 1021
Bse1I ACTGG 1 cut(s) 1166
Bse21I CCTNAGG 1 cut(s) 1181
Bse3DI GCAATG 3 cut(s) 714, 1030, 1042
BseBI CCWGG 2 cut(s) 664, 729
BseDI CCNNGG 5 cut(s) 15, 90, 141, 727, 1014
BseGI GGATG 2 cut(s) 389, 484
BseLI CCNNNNNNNGG 1 cut(s) 1021
BseMI GCAATG 3 cut(s) 714, 1030, 1042
BseMII CTCAG 5 cut(s) 225, 246, 421, 768, 1195
BseNI ACTGG 1 cut(s) 1166
BseRI GAGGAG 5 cut(s) 206, 230, 272, 329, 1169
BseSI GKGCMC 1 cut(s) 727
BseXI GCAGC 5 cut(s) 469, 497, 829, 883, 1163
BseYI CCCAGC 1 cut(s) 719
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 7 cut(s) 47, 89, 140, 203, 266, 523, 725
BshNI GGYRCC 1 cut(s) 747
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 1215
BsiHKCI CYCGRG 1 cut(s) 1014
BsiSI CCGG 1 cut(s) 1015
BslFI GGGAC 1 cut(s) 997
BslI CCNNNNNNNGG 1 cut(s) 1021
BsmAI GTCTC 1 cut(s) 1096
BsmFI GGGAC 1 cut(s) 997
BsnI GGCC 7 cut(s) 47, 89, 140, 203, 266, 523, 725
Bso31I GGTCTC 1 cut(s) 1096
BsoBI CYCGRG 1 cut(s) 1014
Bsp119I TTCGAA 1 cut(s) 910
Bsp120I GGGCCC 1 cut(s) 723
Bsp1286I GDGCHC 2 cut(s) 727, 1215
Bsp1407I TGTACA 1 cut(s) 1039
Bsp143I GATC 6 cut(s) 106, 731, 816, 916, 1024, 1155
Bsp1720I GCTNAGC 1 cut(s) 976
BspACI CCGC 6 cut(s) 95, 149, 178, 182, 701, 845
BspANI GGCC 7 cut(s) 47, 89, 140, 203, 266, 523, 725
BspCNI CTCAG 5 cut(s) 226, 247, 420, 769, 1194
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 6 cut(s) 46, 695, 724, 725, 726, 749
BspMAI CTGCAG 2 cut(s) 487, 1153
BspPI GGATC 3 cut(s) 739, 811, 1032
BspQI GCTCTTC 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 910
BspT107I GGYRCC 1 cut(s) 747
BspTNI GGTCTC 1 cut(s) 1096
BsrBI CCGCTC 1 cut(s) 178
BsrDI GCAATG 3 cut(s) 714, 1030, 1042
BsrGI TGTACA 1 cut(s) 1039
BsrI ACTGG 1 cut(s) 1166
BssECI CCNNGG 5 cut(s) 15, 90, 141, 727, 1014
BssMI GATC 6 cut(s) 106, 731, 816, 916, 1024, 1155
BssNAI GTATAC 1 cut(s) 1002
BssSI CACGAG 1 cut(s) 489
BssT1I CCWWGG 2 cut(s) 15, 90
Bst1107I GTATAC 1 cut(s) 1002
Bst2BI CACGAG 1 cut(s) 489
Bst2UI CCWGG 2 cut(s) 664, 729
Bst4CI ACNGT 4 cut(s) 752, 940, 1069, 1193
Bst6I CTCTTC 3 cut(s) 71, 235, 306
BstAUI TGTACA 1 cut(s) 1039
BstBI TTCGAA 1 cut(s) 910
BstC8I GCNNGC 6 cut(s) 49, 138, 159, 180, 222, 628
BstDEI CTNAG 6 cut(s) 234, 255, 407, 777, 976, 1181
BstF5I GGATG 2 cut(s) 389, 484
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 6 cut(s) 109, 734, 819, 919, 1027, 1158
BstMAI GTCTC 1 cut(s) 1096
BstMBI GATC 6 cut(s) 106, 731, 816, 916, 1024, 1155
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 9 cut(s) 146, 167, 209, 230, 251, 491, 848, 1148, 1183
BstNI CCWGG 2 cut(s) 664, 729
BstNSI RCATGY 2 cut(s) 957, 1008
BstSCI CCNGG 4 cut(s) 662, 727, 1013, 1014
BstSFI CTRYAG 2 cut(s) 483, 1149
BstSLI GKGCMC 1 cut(s) 727
BstV1I GCAGC 5 cut(s) 469, 497, 829, 883, 1163
BstV2I GAAGAC 1 cut(s) 1082
BstX2I RGATCY 2 cut(s) 731, 1024
BstYI RGATCY 2 cut(s) 731, 1024
BstZ17I GTATAC 1 cut(s) 1002
Bsu36I CCTNAGG 1 cut(s) 1181
BsuRI GGCC 7 cut(s) 47, 89, 140, 203, 266, 523, 725
BtgZI GCGATG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 389, 484
BtsIMutI CAGTG 2 cut(s) 415, 977
Cac8I GCNNGC 6 cut(s) 49, 138, 159, 180, 222, 628
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 5 cut(s) 45, 201, 264, 723, 724
Cfr9I CCCGGG 1 cut(s) 1014
Csp6I GTAC 5 cut(s) 22, 748, 793, 1008, 1040
CviAII CATG 6 cut(s) 548, 609, 808, 954, 1005, 1099
CviQI GTAC 5 cut(s) 22, 748, 793, 1008, 1040
DdeI CTNAG 6 cut(s) 234, 255, 407, 777, 976, 1181
DpnI GATC 6 cut(s) 108, 733, 818, 918, 1026, 1157
DpnII GATC 6 cut(s) 106, 731, 816, 916, 1024, 1155
Eam1104I CTCTTC 3 cut(s) 71, 235, 306
EarI CTCTTC 3 cut(s) 71, 235, 306
EciI GGCGGA 1 cut(s) 164
Ecl136II GAGCTC 1 cut(s) 1213
Eco130I CCWWGG 2 cut(s) 15, 90
Eco24I GRGCYC 2 cut(s) 727, 1215
Eco31I GGTCTC 1 cut(s) 1096
Eco53kI GAGCTC 1 cut(s) 1213
Eco57I CTGAAG 1 cut(s) 1157
Eco81I CCTNAGG 1 cut(s) 1181
Eco88I CYCGRG 1 cut(s) 1014
EcoICRI GAGCTC 1 cut(s) 1213
EcoO109I RGGNCCY 2 cut(s) 723, 724
EcoRII CCWGG 2 cut(s) 662, 727
EcoT14I CCWWGG 2 cut(s) 15, 90
EcoT38I GRGCYC 2 cut(s) 727, 1215
ErhI CCWWGG 2 cut(s) 15, 90
FaeI CATG 6 cut(s) 551, 612, 811, 957, 1008, 1102
FaqI GGGAC 1 cut(s) 997
FatI CATG 6 cut(s) 547, 608, 807, 953, 1004, 1098
FauI CCCGC 1 cut(s) 171
FauNDI CATATG 1 cut(s) 1050
FblI GTMKAC 1 cut(s) 1001
Fnu4HI GCNGC 5 cut(s) 483, 486, 843, 897, 1152
FokI GGATG 2 cut(s) 396, 491
FriOI GRGCYC 2 cut(s) 727, 1215
Fsp4HI GCNGC 5 cut(s) 483, 486, 843, 897, 1152
FspBI CTAG 2 cut(s) 1208, 1216
GlaI GCGC 1 cut(s) 101
GluI GCNGC 5 cut(s) 483, 486, 843, 897, 1152
GsaI CCCAGC 1 cut(s) 723
GsuI CTGGAG 2 cut(s) 527, 1149
HaeIII GGCC 7 cut(s) 47, 89, 140, 203, 266, 523, 725
HapII CCGG 1 cut(s) 1015
HhaI GCGC 1 cut(s) 102
Hin1II CATG 6 cut(s) 551, 612, 811, 957, 1008, 1102
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 5 cut(s) 354, 403, 424, 947, 967
HpaII CCGG 1 cut(s) 1015
HphI GGTGA 4 cut(s) 349, 598, 686, 694
Hpy166II GTNNAC 1 cut(s) 1002
Hpy188I TCNGA 3 cut(s) 778, 816, 946
Hpy188III TCNNGA 8 cut(s) 506, 548, 637, 964, 984, 1116, 1171, 1208
Hpy8I GTNNAC 1 cut(s) 1002
HpyAV CCTTC 3 cut(s) 223, 671, 1132
HpyCH4III ACNGT 4 cut(s) 752, 940, 1069, 1193
HpyCH4IV ACGT 1 cut(s) 1010
HpyF10VI GCNNNNNNNGC 9 cut(s) 146, 167, 209, 230, 251, 491, 848, 1148, 1183
HpyF3I CTNAG 6 cut(s) 234, 255, 407, 777, 976, 1181
HpySE526I ACGT 1 cut(s) 1010
Hsp92II CATG 6 cut(s) 551, 612, 811, 957, 1008, 1102
HspAI GCGC 1 cut(s) 100
KpnI GGTACC 1 cut(s) 751
Kzo9I GATC 6 cut(s) 106, 731, 816, 916, 1024, 1155
LguI GCTCTTC 1 cut(s) 235
LmnI GCTCC 3 cut(s) 217, 856, 1182
Lsp1109I GCAGC 5 cut(s) 469, 497, 829, 883, 1163
LweI GCATC 6 cut(s) 66, 144, 374, 469, 843, 989
MaeI CTAG 2 cut(s) 1208, 1216
MaeII ACGT 1 cut(s) 1010
MaeIII GTNAC 1 cut(s) 652
MalI GATC 6 cut(s) 108, 733, 818, 918, 1026, 1157
MbiI CCGCTC 1 cut(s) 178
MboI GATC 6 cut(s) 106, 731, 816, 916, 1024, 1155
MboII GAAGA 5 cut(s) 58, 252, 294, 323, 1087
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 2 cut(s) 731, 1024
MhlI GDGCHC 2 cut(s) 727, 1215
MseI TTAA 3 cut(s) 84, 432, 669
MslI CAYNNNNRTG 2 cut(s) 1035, 1070
MspI CCGG 1 cut(s) 1015
MspR9I CCNGG 4 cut(s) 664, 729, 1015, 1016
MunI CAATTG 1 cut(s) 900
MvaI CCWGG 2 cut(s) 664, 729
MwoI GCNNNNNNNGC 9 cut(s) 146, 167, 209, 230, 251, 491, 848, 1148, 1183
NciI CCSGG 2 cut(s) 1015, 1016
NdeI CATATG 1 cut(s) 1050
NdeII GATC 6 cut(s) 106, 731, 816, 916, 1024, 1155
NlaIII CATG 6 cut(s) 551, 612, 811, 957, 1008, 1102
NlaIV GGNNCC 6 cut(s) 46, 695, 724, 725, 726, 749
NmeAIII GCCGAG 3 cut(s) 30, 166, 292
NmuCI GTSAC 1 cut(s) 652
NspI RCATGY 2 cut(s) 957, 1008
NspV TTCGAA 1 cut(s) 910
PagI TCATGA 1 cut(s) 547
PciI ACATGT 1 cut(s) 1004
PciSI GCTCTTC 1 cut(s) 235
PfeI GAWTC 5 cut(s) 354, 403, 424, 947, 967
PkrI GCNGC 5 cut(s) 484, 487, 844, 898, 1153
Ple19I CGATCG 1 cut(s) 109
PscI ACATGT 1 cut(s) 1004
Psp124BI GAGCTC 1 cut(s) 1215
Psp6I CCWGG 2 cut(s) 662, 727
PspFI CCCAGC 1 cut(s) 719
PspGI CCWGG 2 cut(s) 662, 727
PspN4I GGNNCC 6 cut(s) 46, 695, 724, 725, 726, 749
PspOMI GGGCCC 1 cut(s) 723
PspPI GGNCC 5 cut(s) 45, 201, 264, 723, 724
PstI CTGCAG 2 cut(s) 487, 1153
PsuI RGATCY 2 cut(s) 731, 1024
PvuI CGATCG 1 cut(s) 109
RsaI GTAC 5 cut(s) 23, 749, 794, 1009, 1041
RsaNI GTAC 5 cut(s) 22, 748, 793, 1008, 1040
RseI CAYNNNNRTG 2 cut(s) 1035, 1070
SacI GAGCTC 1 cut(s) 1215
SapI GCTCTTC 1 cut(s) 235
SaqAI TTAA 3 cut(s) 84, 432, 669
SatI GCNGC 5 cut(s) 483, 486, 843, 897, 1152
Sau3AI GATC 6 cut(s) 106, 731, 816, 916, 1024, 1155
Sau96I GGNCC 5 cut(s) 45, 201, 264, 723, 724
ScrFI CCNGG 4 cut(s) 664, 729, 1015, 1016
SduI GDGCHC 2 cut(s) 727, 1215
SfaNI GCATC 6 cut(s) 66, 144, 374, 469, 843, 989
SfcI CTRYAG 2 cut(s) 483, 1149
SfuI TTCGAA 1 cut(s) 910
SmaI CCCGGG 1 cut(s) 1016
SmiMI CAYNNNNRTG 2 cut(s) 1035, 1070
SsiI CCGC 6 cut(s) 95, 149, 178, 182, 701, 845
SspMI CTAG 2 cut(s) 1208, 1216
SstI GAGCTC 1 cut(s) 1215
StyD4I CCNGG 4 cut(s) 662, 727, 1013, 1014
StyI CCWWGG 2 cut(s) 15, 90
TaaI ACNGT 4 cut(s) 752, 940, 1069, 1193
TaiI ACGT 1 cut(s) 1013
TaqI TCGA 4 cut(s) 105, 109, 115, 910
TatI WGTACW 2 cut(s) 792, 1039
TfiI GAWTC 5 cut(s) 354, 403, 424, 947, 967
Tru1I TTAA 3 cut(s) 84, 432, 669
Tru9I TTAA 3 cut(s) 84, 432, 669
TscAI CASTG 2 cut(s) 415, 977
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 5 cut(s) 482, 485, 842, 896, 1151
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 4 cut(s) 563, 703, 796, 1088
TspGWI ACGGA 2 cut(s) 318, 484
TspMI CCCGGG 1 cut(s) 1014
TspRI CASTG 2 cut(s) 415, 977
XapI RAATTY 4 cut(s) 9, 687, 1121, 1203
XbaI TCTAGA 1 cut(s) 1207
XceI RCATGY 2 cut(s) 957, 1008
XmaI CCCGGG 1 cut(s) 1014
XmiI GTMKAC 1 cut(s) 1001
XspI CTAG 2 cut(s) 1208, 1216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.