Rmu_sc0002158.1_g000007

Acid phosphatase homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002158.1
OG0005864
Physical Location & Seq
Forward (+)
11696 .. 12355
660 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 660 bp
atggagccaacaccacccgccaaatccaccacacatccgccgccgccgccgccactcctccggcgattagtcgcaatagacaccaagctctctcaacaaatccacattctcgccaaacccttcctccctcacttcctcctcctcctcctcgaactctccgccgacttccgattattcttccccgtcgccctctccctcctcctcgccccgctcctcagccccggcccaggcccaaacccgaacccgaacccgaactccagcccaatccaactcctccgcccattcctctcccctctcctcctcggcctcctcctcgacctcgccctaatcggcctcatcaaattcaccgtccgccgcgcccgccccgtctacaacaagaacatgaacgtcgccgtttcggtcgaccacttctccttcccgagcggccacgcctctagggtttgcttcgtcgccgctctcttccacctctccgccgccgccctcgccgatgctctactccacctcaggtcgaagtcgccgccggccgtcgagcgctggatcggtgccgatcaagacaaggccgtcagtgttctgctgtcggtcgtttgggcctgggcagcggccacttccatctctaggatcttgctcggccgccacttcgtctccgacgtcttcgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2

Protein Analysis

219

Amino Acids

23.8

Weight (kDa)

10.41

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 98 - 219 2.6e-15 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 560
AatII GACGTC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 542
AccBSI CCGCTC 3 cut(s) 211, 423, 455
AccI GTMKAC 2 cut(s) 369, 402
AccII CGCG 1 cut(s) 357
AclWI GGATC 2 cut(s) 545, 626
AcoI YGGCCR 4 cut(s) 424, 522, 600, 628
AcsI RAATTY 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 648
AfeI AGCGCT 1 cut(s) 533
AfiI CCNNNNNNNGG 2 cut(s) 227, 615
AjnI CCWGG 2 cut(s) 226, 590
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 646
AlwI GGATC 2 cut(s) 545, 626
Ama87I CYCGRG 1 cut(s) 418
Aor51HI AGCGCT 1 cut(s) 533
ApeKI GCWGC 1 cut(s) 596
ApoI RAATTY 1 cut(s) 341
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
AspLEI GCGC 2 cut(s) 359, 534
AspS9I GGNCC 3 cut(s) 224, 230, 588
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 418
AxyI CCTNAGG 1 cut(s) 503
BanI GGYRCC 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 643
BbvCI CCTCAGC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 608
BccI CCATC 1 cut(s) 617
BceAI ACGGC 3 cut(s) 377, 509, 545
BciT130I CCWGG 2 cut(s) 228, 592
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 646
BfaI CTAG 2 cut(s) 435, 615
BfoI RGCGCY 1 cut(s) 535
Bme1390I CCNGG 3 cut(s) 222, 228, 592
BmeT110I CYCGRG 1 cut(s) 418
BmgT120I GGNCC 3 cut(s) 224, 230, 588
BmiI GGNNCC 2 cut(s) 6, 544
BmrFI CCNGG 3 cut(s) 222, 228, 592
BmsI GCATC 1 cut(s) 478
BpiI GAAGAC 1 cut(s) 643
BpmI CTGGAG 1 cut(s) 241
Bpu10I CCTNAGC 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 648
BsaJI CCNNGG 4 cut(s) 220, 226, 301, 591
BsaXI ACNNNNNCTCC 8 cut(s) 108, 138, 239, 269, 395, 425, 626, 656
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 615
Bse118I RCCGGY 1 cut(s) 520
Bse21I CCTNAGG 1 cut(s) 503
BseBI CCWGG 2 cut(s) 228, 592
BseDI CCNNGG 4 cut(s) 220, 226, 301, 591
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 227, 615
BseMII CTCAG 2 cut(s) 229, 517
BseX3I CGGCCG 2 cut(s) 522, 628
BseXI GCAGC 1 cut(s) 608
Bsh1236I CGCG 1 cut(s) 357
Bsh1285I CGRYCG 4 cut(s) 402, 525, 582, 631
BshNI GGYRCC 1 cut(s) 542
BsiEI CGRYCG 4 cut(s) 402, 525, 582, 631
BsiHKCI CYCGRG 1 cut(s) 418
BsiSI CCGG 3 cut(s) 61, 222, 521
BslI CCNNNNNNNGG 2 cut(s) 227, 615
BsmAI GTCTC 1 cut(s) 646
BsmBI CGTCTC 1 cut(s) 646
BsoBI CYCGRG 1 cut(s) 418
Bsp143I GATC 3 cut(s) 537, 547, 618
BspCNI CTCAG 2 cut(s) 228, 516
BspFNI CGCG 1 cut(s) 357
BspLI GGNNCC 2 cut(s) 6, 544
BspPI GGATC 2 cut(s) 545, 626
BspT107I GGYRCC 1 cut(s) 542
BsrBI CCGCTC 3 cut(s) 211, 423, 455
BsrFI RCCGGY 1 cut(s) 520
BssAI RCCGGY 1 cut(s) 520
BssECI CCNNGG 4 cut(s) 220, 226, 301, 591
BssMI GATC 3 cut(s) 537, 547, 618
BssNI GRCGYC 1 cut(s) 648
Bst2UI CCWGG 2 cut(s) 228, 592
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 464
BstACI GRCGYC 1 cut(s) 648
BstC8I GCNNGC 2 cut(s) 361, 522
BstDEI CTNAG 2 cut(s) 215, 503
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 357
BstH2I RGCGCY 1 cut(s) 535
BstHHI GCGC 2 cut(s) 359, 534
BstKTI GATC 3 cut(s) 540, 550, 621
BstMAI GTCTC 1 cut(s) 646
BstMBI GATC 3 cut(s) 537, 547, 618
BstMCI CGRYCG 4 cut(s) 402, 525, 582, 631
BstMWI GCNNNNNNNGC 5 cut(s) 46, 49, 360, 482, 596
BstNI CCWGG 2 cut(s) 228, 592
BstSCI CCNGG 3 cut(s) 220, 226, 590
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 608
BstV2I GAAGAC 1 cut(s) 643
BstX2I RGATCY 1 cut(s) 618
BstYI RGATCY 1 cut(s) 618
BstZI CGGCCG 2 cut(s) 522, 628
Bsu36I CCTNAGG 1 cut(s) 503
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 571
Cac8I GCNNGC 2 cut(s) 361, 522
CfoI GCGC 2 cut(s) 359, 534
Cfr10I RCCGGY 1 cut(s) 520
Cfr13I GGNCC 3 cut(s) 224, 230, 588
CviAII CATG 1 cut(s) 382
DdeI CTNAG 2 cut(s) 215, 503
DpnI GATC 3 cut(s) 539, 549, 620
DpnII GATC 3 cut(s) 537, 547, 618
DrdI GACNNNNNNGTC 1 cut(s) 560
DseDI GACNNNNNNGTC 1 cut(s) 560
EaeI YGGCCR 4 cut(s) 424, 522, 600, 628
EagI CGGCCG 2 cut(s) 522, 628
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
EciI GGCGGA 5 cut(s) 27, 148, 266, 341, 460
EclXI CGGCCG 2 cut(s) 522, 628
Eco47III AGCGCT 1 cut(s) 533
Eco52I CGGCCG 2 cut(s) 522, 628
Eco81I CCTNAGG 1 cut(s) 503
Eco88I CYCGRG 1 cut(s) 418
EcoRII CCWGG 2 cut(s) 226, 590
Esp3I CGTCTC 1 cut(s) 646
FaeI CATG 1 cut(s) 385
FaiI YATR 1 cut(s) 383
FatI CATG 1 cut(s) 381
FauI CCCGC 3 cut(s) 25, 216, 368
FblI GTMKAC 2 cut(s) 369, 402
FokI GGATG 1 cut(s) 21
FspBI CTAG 2 cut(s) 435, 615
GlaI GCGC 2 cut(s) 358, 533
GsuI CTGGAG 1 cut(s) 241
HaeII RGCGCY 1 cut(s) 535
HapII CCGG 3 cut(s) 61, 222, 521
HhaI GCGC 2 cut(s) 359, 534
Hin1I GRCGYC 1 cut(s) 648
Hin1II CATG 1 cut(s) 385
Hin6I GCGC 2 cut(s) 357, 532
HinP1I GCGC 2 cut(s) 357, 532
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HpaII CCGG 3 cut(s) 61, 222, 521
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 370, 403
Hpy188I TCNGA 2 cut(s) 170, 646
Hpy188III TCNNGA 2 cut(s) 418, 551
Hpy8I GTNNAC 2 cut(s) 370, 403
Hpy99I CGWCG 5 cut(s) 188, 392, 452, 530, 650
HpyAV CCTTC 2 cut(s) 130, 424
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 387, 648
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 49, 360, 482, 596
HpyF3I CTNAG 2 cut(s) 215, 503
HpySE526I ACGT 2 cut(s) 387, 648
Hsp92I GRCGYC 1 cut(s) 648
Hsp92II CATG 1 cut(s) 385
HspAI GCGC 2 cut(s) 357, 532
KroI GCCGGC 1 cut(s) 520
KroNI GCCGGC 1 cut(s) 522
Kzo9I GATC 3 cut(s) 537, 547, 618
LmnI GCTCC 2 cut(s) 4, 216
Lsp1109I GCAGC 1 cut(s) 608
LweI GCATC 1 cut(s) 478
MaeI CTAG 2 cut(s) 435, 615
MaeII ACGT 2 cut(s) 387, 648
MalI GATC 3 cut(s) 539, 549, 620
MbiI CCGCTC 3 cut(s) 211, 423, 455
MboI GATC 3 cut(s) 537, 547, 618
MboII GAAGA 3 cut(s) 169, 451, 643
MflI RGATCY 1 cut(s) 618
MluCI AATT 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 292
MroNI GCCGGC 1 cut(s) 520
MspA1I CMGCKG 1 cut(s) 599
MspI CCGG 3 cut(s) 61, 222, 521
MspR9I CCNGG 3 cut(s) 222, 228, 592
MvaI CCWGG 2 cut(s) 228, 592
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 5 cut(s) 46, 49, 360, 482, 596
NaeI GCCGGC 1 cut(s) 522
NciI CCSGG 1 cut(s) 222
NdeII GATC 3 cut(s) 537, 547, 618
NgoMIV GCCGGC 1 cut(s) 520
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 2 cut(s) 6, 544
NmeAIII GCCGAG 2 cut(s) 282, 606
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PdiI GCCGGC 1 cut(s) 522
Psp6I CCWGG 2 cut(s) 226, 590
PspGI CCWGG 2 cut(s) 226, 590
PspN4I GGNNCC 2 cut(s) 6, 544
PspPI GGNCC 3 cut(s) 224, 230, 588
PsuI RGATCY 1 cut(s) 618
SalI GTCGAC 1 cut(s) 401
Sau3AI GATC 3 cut(s) 537, 547, 618
Sau96I GGNCC 3 cut(s) 224, 230, 588
ScrFI CCNGG 3 cut(s) 222, 228, 592
SetI ASST 7 cut(s) 90, 321, 390, 468, 504, 509, 651
SfaNI GCATC 1 cut(s) 478
Sse9I AATT 1 cut(s) 341
SspMI CTAG 2 cut(s) 435, 615
StyD4I CCNGG 3 cut(s) 220, 226, 590
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 390, 651
TaqI TCGA 5 cut(s) 150, 315, 402, 509, 528
TaqII GACCGA 2 cut(s) 388, 568
TasI AATT 1 cut(s) 341
TscAI CASTG 1 cut(s) 571
TseI GCWGC 1 cut(s) 596
TspDTI ATGAA 1 cut(s) 398
TspRI CASTG 1 cut(s) 571
XapI RAATTY 1 cut(s) 341
XmiI GTMKAC 2 cut(s) 369, 402
XspI CTAG 2 cut(s) 435, 615
ZraI GACGTC 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.