Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002248.1

Orthogroup ID

OG0003652

Physical Location & Seq

Genomic Coordinates Forward (+)

190636 .. 192249

Gene Structure 1614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgatcgaggaggagatgggctatgtcaaatcagtgctgaaacaggtgattgggttgttgcctgagaatgctttggttaggttcatctcattcaggactcaagtgcaggtgcatgaattagggtttgccgaattgagcaaggtctatgtgtttagggggaataaggagatttccaaagatcagatgctggagcaattggacagccaaatggctttagtggttcacttggttctttacattaccggcttaattaatacttacacctataaaatgcttgtgttatcagctagtaactacagagatacatccacatgtggcgcactccactccattggatcagatatgacacgcatgagaatcagagctaattcaaatgaagacagtccaatgaagagtgagcagactacttcaatgagaaaggagcatggaaacacccccaccatccaggctcagcccgaaatttcaagagagagttatgcacctggtaatgatgaaaacagagcaaatggcaacataaactactgtgatgaagatgagagaatgatgtgcagtagtaggtcgacgcaagataagcgttctaggaaaacaatcatggtcaaggagcctattattcagtacacaaagcgccagatgtctcaagccctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

215

Amino Acids

24.58

Weight (kDa)

7.7

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec23_trunk	PF04811	3 - 70	2e-06	Sec23/Sec24 trunk domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67370
fragaria_vesca	FvH4_2g22740 FvH4_4g23791 FvH4_4g23791 FvH4_4g23800
malus_domestica	MD13G1118700.v1.1 MD16G1118900.v1.1
prunus_persica	Prupe.1G226200_v2.0.a1 Prupe.1G226200_v2.0.a1
pyrus_communis	pycom13g10360 pycom16g10180
rosa_chinensis	RchiOBHm_Chr4g0430291 RchiOBHm_Chr4g0430321 RchiOBHm_Chr4g0430341
rosa_laevigata	RLG00000006983 RLG00000006985 RLG00000006987
rosa_multiflora	Rmu_co8441339.1_g000001 Rmu_sc0000131.1_g000059 Rmu_sc0001089.1_g000027 Rmu_sc0002248.1_g000047 Rmu_sc0020995.1_g000013
rosa_roxburghii	Rroxscaffold_5G00372090 Rroxscaffold_5G00372110
rosa_rugosa	Rorug04G0242500 Rorug04G0242600
rosa_samantha	Rh4AG226000 Rh4AG298900 Rh4BG305500 Rh4CG240300 Rh4CG321000 Rh4CG321400
rosa_wichuraiana	Rw4G025920 Rw4G025930 Rw4G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	97
Acc36I	ACCTGC	1 cut(s)	97
AccI	GTMKAC	1 cut(s)	560
AclWI	GGATC	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	459
AfaI	GTAC	1 cut(s)	617
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	3 cut(s)	372, 411, 465
AjnI	CCWGG	2 cut(s)	444, 481
AluBI	AGCT	2 cut(s)	287, 365
AluI	AGCT	2 cut(s)	287, 365
Alw26I	GTCTC	1 cut(s)	639
AlwI	GGATC	1 cut(s)	343
AlwNI	CAGNNNCTG	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	459
AseI	ATTAAT	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	320, 627
AsuHPI	GGTGA	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	384
BccI	CCATC	2 cut(s)	10, 449
BciT130I	CCWGG	2 cut(s)	446, 483
BcoDI	GTCTC	1 cut(s)	639
BfaI	CTAG	2 cut(s)	288, 579
BfmI	CTRYAG	1 cut(s)	295
BfoI	RGCGCY	1 cut(s)	628
BfuAI	ACCTGC	1 cut(s)	97
BlpI	GCTNAGC	1 cut(s)	450
Bme1390I	CCNGG	2 cut(s)	446, 483
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	2 cut(s)	446, 483
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	84, 621
Bse118I	RCCGGY	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	446, 483
BseGI	GGATG	2 cut(s)	305, 441
BseMII	CTCAG	2 cut(s)	54, 464
BseRI	GAGGAG	2 cut(s)	23, 26
BsgI	GTGCAG	2 cut(s)	125, 568
BsiSI	CCGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	639
BsmI	GAATGC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	3, 178, 335
Bsp1720I	GCTNAGC	1 cut(s)	450
BspCNI	CTCAG	2 cut(s)	55, 463
BspLI	GGNNCC	1 cut(s)	603
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	242
BssMI	GATC	3 cut(s)	3, 178, 335
Bst2UI	CCWGG	2 cut(s)	446, 483
Bst4CI	ACNGT	2 cut(s)	383, 524
Bst6I	CTCTTC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	63, 450
BstF5I	GGATG	2 cut(s)	305, 441
BstH2I	RGCGCY	1 cut(s)	628
BstHHI	GCGC	2 cut(s)	320, 627
BstKTI	GATC	3 cut(s)	6, 181, 338
BstMAI	GTCTC	1 cut(s)	639
BstMBI	GATC	3 cut(s)	3, 178, 335
BstMWI	GCNNNNNNNGC	1 cut(s)	571
BstNI	CCWGG	2 cut(s)	446, 483
BstNSI	RCATGY	1 cut(s)	315
BstSCI	CCNGG	2 cut(s)	444, 481
BstSFI	CTRYAG	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	384
BstXI	CCANNNNNNTGG	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	305, 441
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	187
CfoI	GCGC	2 cut(s)	320, 627
Cfr10I	RCCGGY	1 cut(s)	242
CseI	GACGC	1 cut(s)	571
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	616
CviAII	CATG	5 cut(s)	113, 312, 352, 425, 592
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	2 cut(s)	63, 450
DpnI	GATC	3 cut(s)	5, 180, 337
DpnII	GATC	3 cut(s)	3, 178, 335
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
EcoRII	CCWGG	2 cut(s)	444, 481
FaeI	CATG	5 cut(s)	116, 315, 355, 428, 595
FatI	CATG	5 cut(s)	112, 311, 351, 424, 591
FblI	GTMKAC	1 cut(s)	560
FokI	GGATG	2 cut(s)	292, 428
FspBI	CTAG	2 cut(s)	288, 579
GlaI	GCGC	2 cut(s)	319, 626
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	628
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	571
HhaI	GCGC	2 cut(s)	320, 627
Hin1II	CATG	5 cut(s)	116, 315, 355, 428, 595
Hin6I	GCGC	2 cut(s)	318, 625
HinP1I	GCGC	2 cut(s)	318, 625
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	2 cut(s)	97, 357
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	223, 561, 618
Hpy188I	TCNGA	4 cut(s)	183, 340, 362, 647
Hpy188III	TCNNGA	2 cut(s)	94, 465
Hpy8I	GTNNAC	3 cut(s)	223, 561, 618
Hpy99I	CGWCG	1 cut(s)	565
HpyCH4III	ACNGT	2 cut(s)	383, 524
HpyCH4V	TGCA	4 cut(s)	106, 112, 479, 549
HpyF10VI	GCNNNNNNNGC	1 cut(s)	571
HpyF3I	CTNAG	2 cut(s)	63, 450
Hsp92II	CATG	5 cut(s)	116, 315, 355, 428, 595
HspAI	GCGC	2 cut(s)	318, 625
Kzo9I	GATC	3 cut(s)	3, 178, 335
LmnI	GCTCC	3 cut(s)	190, 421, 601
LweI	GCATC	1 cut(s)	174
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	2 cut(s)	288, 579
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	3 cut(s)	5, 180, 337
MboI	GATC	3 cut(s)	3, 178, 335
MboII	GAAGA	3 cut(s)	389, 403, 542
MfeI	CAATTG	1 cut(s)	194
MluCI	AATT	6 cut(s)	116, 131, 194, 249, 367, 459
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	1 cut(s)	4
MseI	TTAA	2 cut(s)	248, 252
MslI	CAYNNNNRTG	1 cut(s)	310
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	446, 483
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	2 cut(s)	446, 483
MwoI	GCNNNNNNNGC	1 cut(s)	571
NdeII	GATC	3 cut(s)	3, 178, 335
NlaIII	CATG	5 cut(s)	116, 315, 355, 428, 595
NlaIV	GGNNCC	1 cut(s)	603
NspI	RCATGY	1 cut(s)	315
PacI	TTAATTAA	1 cut(s)	252
PaqCI	CACCTGC	1 cut(s)	97
PciI	ACATGT	1 cut(s)	311
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	357
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PscI	ACATGT	1 cut(s)	311
PshBI	ATTAAT	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	444, 481
PspGI	CCWGG	2 cut(s)	444, 481
PspN4I	GGNNCC	1 cut(s)	603
PstNI	CAGNNNCTG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
RseI	CAYNNNNRTG	1 cut(s)	310
SalI	GTCGAC	1 cut(s)	559
SaqAI	TTAA	2 cut(s)	248, 252
Sau3AI	GATC	3 cut(s)	3, 178, 335
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	446, 483
SetI	ASST	9 cut(s)	48, 83, 111, 144, 266, 289, 367, 484, 560
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	310
SmlI	CTYRAG	2 cut(s)	99, 636
SmoI	CTYRAG	2 cut(s)	99, 636
Sse9I	AATT	6 cut(s)	116, 131, 194, 249, 367, 459
SspMI	CTAG	2 cut(s)	288, 579
StyD4I	CCNGG	2 cut(s)	444, 481
TaaI	ACNGT	2 cut(s)	383, 524
TaqI	TCGA	2 cut(s)	6, 560
TasI	AATT	6 cut(s)	116, 131, 194, 249, 367, 459
TatI	WGTACW	1 cut(s)	615
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	2 cut(s)	248, 252
Tru9I	TTAA	2 cut(s)	248, 252
TscAI	CASTG	1 cut(s)	39
TspDTI	ATGAA	6 cut(s)	73, 129, 390, 404, 507, 543
TspRI	CASTG	1 cut(s)	39
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	1 cut(s)	459
XceI	RCATGY	1 cut(s)	315
XmiI	GTMKAC	1 cut(s)	560
XspI	CTAG	2 cut(s)	288, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.