Rmu_sc0002999.1_g000029

Lipid transfer-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002999.1
OG0004105
Physical Location & Seq
Forward (+)
140526 .. 143545
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 753 bp
atggggtctactaccagatggttattgctcttggtctatcagaaggggtttgttcggggcttgttggtggttctggctgggatggtgagaggcggtggtcatgctaacaggtccggcgatcgaaccttgatgacgacccactggtctgactcgatggcgcgggcggagcaacttggctgttacgtacgacggggatgtgagcctaggaggactggaccggaccaggctaatgggccttgggttgacctttgctttggtgagttaccgtctatagaagagatgagcataactttgcagatcttatgcgaaaaggtgaacccaatgatgtacccaagaagcttttgcaaggggtctattcagtccatggcatgcatgcagaaactcatgccttgtcaatcatattttaagaaactggacaatgttcctgatacgtgttgtacgccgatgaagaatatgctatcggagacggcggatgataagaactgcatttgcgacgtctttggcaaccccatcatgttgaagagcctgaatataacccaggatgataccatgaagcttgcaaaggcttgtggcttcaaggctgacatttcaaaatgcgacaagaaggaaaaggatactgcatcgccatcatcatcaccatccgaatccaccccacgtccatcaccatcagcttctaatgcagcctctagtttcggcaaatctggtttcacagcctctttcattgcaactctaattttttcagcagcattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

250

Amino Acids

27.3

Weight (kDa)

8.66

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 121 - 199 1.5e-09 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 142
AatII GACGTC 1 cut(s) 498
AccI GTMKAC 1 cut(s) 8
AccII CGCG 1 cut(s) 160
AciI CCGC 4 cut(s) 93, 160, 164, 470
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 3 cut(s) 186, 329, 439
AflIII ACRYGT 1 cut(s) 431
AgsI TTSAA 3 cut(s) 520, 577, 591
AjiI CACGTC 1 cut(s) 656
AjnI CCWGG 2 cut(s) 222, 537
AluBI AGCT 3 cut(s) 339, 556, 671
AluI AGCT 3 cut(s) 339, 556, 671
Alw26I GTCTC 1 cut(s) 458
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 680, 743
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AspA2I CCTAGG 1 cut(s) 203
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 4 cut(s) 111, 215, 220, 233
AsuHPI GGTGA 5 cut(s) 97, 269, 325, 627, 654
AvaII GGWCC 3 cut(s) 111, 215, 220
AvrII CCTAGG 1 cut(s) 203
BbvI GCAGC 1 cut(s) 692
BccI CCATC 8 cut(s) 12, 76, 148, 518, 634, 646, 667, 673
BceAI ACGGC 1 cut(s) 483
BciT130I CCWGG 2 cut(s) 224, 539
BciVI GTATCC 1 cut(s) 607
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 2 cut(s) 204, 687
BfmI CTRYAG 1 cut(s) 270
BfuI GTATCC 1 cut(s) 607
BglII AGATCT 1 cut(s) 297
BisI GCNGC 2 cut(s) 681, 744
BlnI CCTAGG 1 cut(s) 203
BlsI GCNGC 2 cut(s) 682, 745
Bme1390I CCNGG 2 cut(s) 224, 539
Bme18I GGWCC 3 cut(s) 111, 215, 220
BmgBI CACGTC 1 cut(s) 656
BmgT120I GGNCC 4 cut(s) 111, 215, 220, 233
BmrFI CCNGG 2 cut(s) 224, 539
BmsI GCATC 1 cut(s) 629
BsaAI YACGTR 2 cut(s) 184, 432
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 4 cut(s) 203, 236, 363, 537
BsaWI WCCGGW 1 cut(s) 217
Bse1I ACTGG 3 cut(s) 146, 217, 417
Bse3DI GCAATG 1 cut(s) 720
BseBI CCWGG 2 cut(s) 224, 539
BseDI CCNNGG 4 cut(s) 203, 236, 363, 537
BseGI GGATG 5 cut(s) 87, 200, 478, 547, 638
BseMI GCAATG 1 cut(s) 720
BseNI ACTGG 3 cut(s) 146, 217, 417
BseXI GCAGC 1 cut(s) 692
BseYI CCCAGC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 235
BsiEI CGRYCG 1 cut(s) 121
BsiSI CCGG 2 cut(s) 114, 218
BsiWI CGTACG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 458
BsmBI CGTCTC 1 cut(s) 458
BsnI GGCC 1 cut(s) 235
Bsp143I GATC 2 cut(s) 118, 297
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 4 cut(s) 93, 160, 164, 470
BspANI GGCC 1 cut(s) 235
BspFNI CGCG 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 720
BsrI ACTGG 3 cut(s) 146, 217, 417
BssECI CCNNGG 4 cut(s) 203, 236, 363, 537
BssMI GATC 2 cut(s) 118, 297
BssNI GRCGYC 1 cut(s) 495
BssT1I CCWWGG 3 cut(s) 203, 236, 363
Bst2UI CCWGG 2 cut(s) 224, 539
Bst4CI ACNGT 1 cut(s) 267
Bst6I CTCTTC 2 cut(s) 270, 515
BstACI GRCGYC 1 cut(s) 495
BstBAI YACGTR 2 cut(s) 184, 432
BstC8I GCNNGC 4 cut(s) 162, 370, 374, 558
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 5 cut(s) 87, 200, 478, 547, 638
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 2 cut(s) 121, 300
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 2 cut(s) 118, 297
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 166, 677
BstNI CCWGG 2 cut(s) 224, 539
BstNSI RCATGY 2 cut(s) 372, 376
BstSCI CCNGG 2 cut(s) 222, 537
BstSFI CTRYAG 1 cut(s) 270
BstSNI TACGTA 1 cut(s) 184
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 692
BstX2I RGATCY 1 cut(s) 297
BstXI CCANNNNNNTGG 1 cut(s) 230
BstYI RGATCY 1 cut(s) 297
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 363
BtgZI GCGATG 1 cut(s) 606
BtrI CACGTC 1 cut(s) 656
BtsCI GGATG 5 cut(s) 87, 200, 478, 547, 638
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 4 cut(s) 162, 370, 374, 558
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 4 cut(s) 111, 215, 220, 233
Csp6I GTAC 3 cut(s) 185, 328, 438
CviAII CATG 7 cut(s) 101, 364, 369, 373, 385, 514, 550
CviQI GTAC 3 cut(s) 185, 328, 438
DpnI GATC 2 cut(s) 120, 299
DpnII GATC 2 cut(s) 118, 297
DrdI GACNNNNNNGTC 1 cut(s) 142
DseDI GACNNNNNNGTC 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 270, 515
EarI CTCTTC 2 cut(s) 270, 515
EciI GGCGGA 2 cut(s) 179, 485
Eco105I TACGTA 1 cut(s) 184
Eco130I CCWWGG 3 cut(s) 203, 236, 363
Eco47I GGWCC 3 cut(s) 111, 215, 220
EcoRII CCWGG 2 cut(s) 222, 537
EcoT14I CCWWGG 3 cut(s) 203, 236, 363
EcoT22I ATGCAT 1 cut(s) 374
ErhI CCWWGG 3 cut(s) 203, 236, 363
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 7 cut(s) 104, 367, 372, 376, 388, 517, 553
FatI CATG 7 cut(s) 100, 363, 368, 372, 384, 513, 549
FauI CCCGC 1 cut(s) 153
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 681, 744
FokI GGATG 5 cut(s) 94, 207, 485, 554, 625
Fsp4HI GCNGC 2 cut(s) 681, 744
FspBI CTAG 2 cut(s) 204, 687
GlaI GCGC 1 cut(s) 159
GluI GCNGC 2 cut(s) 681, 744
GsaI CCCAGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 235
HapII CCGG 2 cut(s) 114, 218
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 7 cut(s) 104, 367, 372, 376, 388, 517, 553
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 2 cut(s) 337, 554
HinfI GANTC 2 cut(s) 149, 644
HpaII CCGG 2 cut(s) 114, 218
HphI GGTGA 5 cut(s) 97, 269, 325, 627, 654
Hpy166II GTNNAC 3 cut(s) 9, 244, 316
Hpy188I TCNGA 4 cut(s) 42, 148, 463, 643
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 3 cut(s) 9, 244, 316
Hpy99I CGWCG 2 cut(s) 192, 497
HpyAV CCTTC 2 cut(s) 37, 598
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4IV ACGT 4 cut(s) 183, 431, 495, 655
HpyCH4V TGCA 9 cut(s) 295, 345, 372, 376, 486, 560, 620, 680, 725
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 677
HpySE526I ACGT 4 cut(s) 183, 431, 495, 655
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 7 cut(s) 104, 367, 372, 376, 388, 517, 553
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 2 cut(s) 118, 297
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 1 cut(s) 692
LweI GCATC 1 cut(s) 629
MaeI CTAG 2 cut(s) 204, 687
MaeII ACGT 4 cut(s) 183, 431, 495, 655
MaeIII GTNAC 2 cut(s) 179, 261
MalI GATC 2 cut(s) 120, 299
MboI GATC 2 cut(s) 118, 297
MboII GAAGA 3 cut(s) 287, 460, 532
MflI RGATCY 1 cut(s) 297
MluCI AATT 1 cut(s) 732
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 4 cut(s) 83, 201, 694, 724
Mph1103I ATGCAT 1 cut(s) 374
MseI TTAA 2 cut(s) 405, 751
MspI CCGG 2 cut(s) 114, 218
MspR9I CCNGG 2 cut(s) 224, 539
MvaI CCWGG 2 cut(s) 224, 539
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 166, 677
NcoI CCATGG 1 cut(s) 363
NdeII GATC 2 cut(s) 118, 297
NlaIII CATG 7 cut(s) 104, 367, 372, 376, 388, 517, 553
NsiI ATGCAT 1 cut(s) 374
NspI RCATGY 2 cut(s) 372, 376
PaeI GCATGC 2 cut(s) 372, 376
PciSI GCTCTTC 1 cut(s) 515
PfeI GAWTC 1 cut(s) 644
Pfl23II CGTACG 1 cut(s) 184
PkrI GCNGC 2 cut(s) 682, 745
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Ppu21I YACGTR 2 cut(s) 184, 432
Psp6I CCWGG 2 cut(s) 222, 537
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 2 cut(s) 222, 537
PspLI CGTACG 1 cut(s) 184
PspPI GGNCC 4 cut(s) 111, 215, 220, 233
PsuI RGATCY 1 cut(s) 297
PvuI CGATCG 1 cut(s) 121
RsaI GTAC 3 cut(s) 186, 329, 439
RsaNI GTAC 3 cut(s) 185, 328, 438
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 2 cut(s) 405, 751
SatI GCNGC 2 cut(s) 681, 744
Sau3AI GATC 2 cut(s) 118, 297
Sau96I GGNCC 4 cut(s) 111, 215, 220, 233
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 224, 539
SfaNI GCATC 1 cut(s) 629
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 3 cut(s) 111, 215, 220
SnaBI TACGTA 1 cut(s) 184
SphI GCATGC 2 cut(s) 372, 376
Sse9I AATT 1 cut(s) 732
SsiI CCGC 4 cut(s) 93, 160, 164, 470
SspMI CTAG 2 cut(s) 204, 687
StyD4I CCNGG 2 cut(s) 222, 537
StyI CCWWGG 3 cut(s) 203, 236, 363
TaaI ACNGT 1 cut(s) 267
TaiI ACGT 4 cut(s) 186, 434, 498, 658
TaqI TCGA 2 cut(s) 121, 152
TasI AATT 1 cut(s) 732
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 2 cut(s) 405, 751
Tru9I TTAA 2 cut(s) 405, 751
TscAI CASTG 1 cut(s) 146
TseI GCWGC 2 cut(s) 680, 743
TspDTI ATGAA 3 cut(s) 461, 566, 709
TspRI CASTG 1 cut(s) 146
VpaK11BI GGWCC 3 cut(s) 111, 215, 220
XceI RCATGY 2 cut(s) 372, 376
XmaJI CCTAGG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 2 cut(s) 204, 687
ZraI GACGTC 1 cut(s) 496
Zsp2I ATGCAT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.