Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003108.1

Orthogroup ID

OG0008238

Physical Location & Seq

Genomic Coordinates Reverse (-)

99410 .. 99913

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgcctccgtcagtgtttatgtctgcagctagtatacctgtacctcctccacctgtatctgagtttacaaccatgcaaatggcttacatacctacaaacgcaatgccgacgcctccaccgcctttgcctcatgtgcggccaccaacacctccgcatgcagaacctaagccaaagcgacagaagcttgatgattcaatgcttattccagaagataaatttctggcacagcacccgggaccggtcggcatcaatatatctgttcccaatgttgatgaaggtaacctcaagggacaacttttggagatcacagtgcagtctttatctgaaactgttggcagtctgaaagagaaaatttctggggaaatccagcttccggcaaacaaacagaaattgagtggaaatacgggttttctaaaagacaatttgtcccttgcatattacaatgtaggcgcaggacaaacacttgctctttcaataagagagcgcggtggtagaaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

167

Amino Acids

18.0

Weight (kDa)

9.22

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	95 - 162	3e-09	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27600
rosa_chinensis	RchiOBHm_Chr1g0364581 RchiOBHm_Chr1g0364591 RchiOBHm_Chr7g0192451 RchiOBHm_Chr7g0192471
rosa_laevigata	RLG00000004366
rosa_multiflora	Rmu_co8010994.1_g000001 Rmu_co8391555.1_g000001 Rmu_sc0003108.1_g000026 Rmu_sc0010788.1_g000002 Rmu_ssc0000278.1_g000009
rosa_rugosa	Rorug01G0316300 Rorug07G0001600
rosa_samantha	Rh1AG145600 Rh1AG326100 Rh1CG128300 Rh7AG125600 Rh7BG127900
rosa_wichuraiana	Rw1G011260 Rw1G028830 Rw1G028890 Rw7G010130 Rw7G010820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	34
AccII	CGCG	1 cut(s)	486
AciI	CCGC	4 cut(s)	119, 136, 152, 486
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	215, 351
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	2 cut(s)	238, 373
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	195, 474
AhdI	GACNNNNNGTC	1 cut(s)	424
AluBI	AGCT	3 cut(s)	29, 184, 370
AluI	AGCT	3 cut(s)	29, 184, 370
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	2 cut(s)	215, 351
AsiGI	ACCGGT	1 cut(s)	238
AspLEI	GCGC	2 cut(s)	452, 486
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	2 cut(s)	233, 234
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	38
BcnI	CCSGG	2 cut(s)	233, 234
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	2 cut(s)	27, 137
BlsI	GCNGC	2 cut(s)	28, 138
Bme1390I	CCNGG	2 cut(s)	233, 234
Bme18I	GGWCC	1 cut(s)	236
BmeRI	GACNNNNNGTC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	2 cut(s)	233, 234
BmsI	GCATC	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	2 cut(s)	233, 234
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 373
Bse118I	RCCGGY	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	238, 373
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	486
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	139
BshTI	ACCGGT	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	3 cut(s)	233, 239, 374
BslFI	GGGAC	3 cut(s)	249, 303, 412
BslI	CCNNNNNNNGG	2 cut(s)	238, 373
BsmFI	GGGAC	3 cut(s)	249, 303, 412
BsnI	GGCC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	303
BspACI	CCGC	4 cut(s)	119, 136, 152, 486
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	303
BssNAI	GTATAC	1 cut(s)	35
BssNI	GRCGYC	1 cut(s)	110
Bst1107I	GTATAC	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	310, 331
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	60, 165
BstEII	GGTNACC	1 cut(s)	278
BstFNI	CGCG	1 cut(s)	486
BstHHI	GCGC	2 cut(s)	452, 486
BstKTI	GATC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	303
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 133, 181
BstNSI	RCATGY	1 cut(s)	158
BstPI	GGTNACC	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	231, 232
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstZ17I	GTATAC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	18, 315
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	2 cut(s)	452, 486
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	236
Cfr9I	CCCGGG	1 cut(s)	232
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	41
CspAI	ACCGGT	1 cut(s)	238
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	3 cut(s)	73, 131, 155
CviJI	RGCY	6 cut(s)	29, 83, 139, 169, 184, 370
CviKI_1	RGCY	6 cut(s)	29, 83, 139, 169, 184, 370
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	60, 165
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
DriI	GACNNNNNGTC	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	137
Eam1105I	GACNNNNNGTC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	232
Eco91I	GGTNACC	1 cut(s)	278
EcoO65I	GGTNACC	1 cut(s)	278
FaeI	CATG	3 cut(s)	76, 134, 158
FaiI	YATR	8 cut(s)	20, 35, 74, 89, 132, 156, 254, 436
FaqI	GGGAC	3 cut(s)	249, 303, 412
FatI	CATG	3 cut(s)	72, 130, 154
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	27, 137
Fsp4HI	GCNGC	2 cut(s)	27, 137
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	2 cut(s)	451, 485
GluI	GCNGC	2 cut(s)	27, 137
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	3 cut(s)	233, 239, 374
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	2 cut(s)	452, 486
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	3 cut(s)	76, 134, 158
Hin6I	GCGC	2 cut(s)	450, 484
HinP1I	GCGC	2 cut(s)	450, 484
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	3 cut(s)	233, 239, 374
Hpy166II	GTNNAC	2 cut(s)	35, 66
Hpy188I	TCNGA	3 cut(s)	61, 325, 342
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	2 cut(s)	35, 66
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	2 cut(s)	310, 331
HpyCH4V	TGCA	5 cut(s)	26, 76, 158, 313, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 133, 181
HpyF3I	CTNAG	2 cut(s)	60, 165
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	76, 134, 158
HspAI	GCGC	2 cut(s)	450, 484
Kzo9I	GATC	1 cut(s)	303
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	1 cut(s)	221
MluCI	AATT	4 cut(s)	215, 351, 389, 421
MnlI	CCTC	7 cut(s)	15, 54, 57, 123, 138, 159, 293
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	3 cut(s)	233, 239, 374
MspR9I	CCNGG	2 cut(s)	233, 234
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	3 cut(s)	118, 133, 181
NciI	CCSGG	2 cut(s)	233, 234
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	3 cut(s)	76, 134, 158
NlaIV	GGNNCC	1 cut(s)	237
NspI	RCATGY	1 cut(s)	158
PaeI	GCATGC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	191
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	28, 138
PspEI	GGTNACC	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	77
SatI	GCNGC	2 cut(s)	27, 137
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	233, 234
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	236
SmaI	CCCGGG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SphI	GCATGC	1 cut(s)	158
Sse9I	AATT	4 cut(s)	215, 351, 389, 421
SsiI	CCGC	4 cut(s)	119, 136, 152, 486
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	231, 232
TaaI	ACNGT	2 cut(s)	310, 331
TasI	AATT	4 cut(s)	215, 351, 389, 421
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	1 cut(s)	191
TscAI	CASTG	2 cut(s)	18, 315
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	288
TspMI	CCCGGG	1 cut(s)	232
TspRI	CASTG	2 cut(s)	18, 315
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	2 cut(s)	215, 351
XceI	RCATGY	1 cut(s)	158
XmaI	CCCGGG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.