Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003233.1

Orthogroup ID

OG0002969

Physical Location & Seq

Genomic Coordinates Forward (+)

45393 .. 47337

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003233.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atgtgtaccccgccacaatggactttggcggaactccgcgtcaactgtttctttggatttcttcgcctacatgtcatgtcagtgtgttgcgagtccagactctcagagagaagaagagggaaaacgactgaaagcgagaagaaagcggtttcggccttgggttcctggtttatttatttatttcttttcttttctcctttctgctccactctcgcctcttccccctctaacactgtccccaattcgctccactctaaaaccctaattcttcagccccaacttgctgccactcttgcctcccatccctccaaaatttcgctccaccgtttgagatcggccttaccgcacttccagaataattggctgtgcggtcctcgtttgaagttgcttcctttgagtctgtgttgttccttgtattcaacaatggctggtgaagtagtgactgtaaatggaaatggcaatggaaacacccagctgaatccacagaggacttaccaagttgttgtggctgcaactcgagaaatgggtattggaaaggatgggaaactaccttggaaacttccttctgatctcaagttctttaaggatgtcactgtaaccacatcagatcccggaaaaaagaatgcaattataatgggcagaaaaacatgggagagcattccccctgagcatcggcctctacctggacgccttaatgttgttctgactcgttctgggagttttgatatagctactgcagagaatgtcgtcatatgtgggagcatggcctctgctctggagctgttagctgcttctccttactgtctgtcaattgacaaagtgtttctcataggaggtggccagatattgagggaagctctcaatgggcctggctgtgatgcaattcacattacagaaatagagaccaacattgaatgtgatactttcatccctgcaattgattccactgtatttcagccctggtattcatcttttcccaaggtggagaatagcattcgttattccctcacgacttatgtgcgtgtgaggagttctgaagttggatcccttttgcaagtggtcgatcataaattctctacaaactctaagtttggagatctcaacaagctccaagcttggagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004146 GO:0004799 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0009058 GO:0009108 GO:0009256 GO:0009257 GO:0009396 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019752 GO:0032259 GO:0034641 GO:0042083 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00670 ko00790 ko01100 map00240 map00670 map00790 map01100

Pfam Domains

Protein Families

DHFR_1 Thymidylat_synt

Protein Analysis

374

Amino Acids

41.35

Weight (kDa)

9.13

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16370 AT2G16370 AT2G16370 AT4G34570 AT4G34570 AT4G34570 AT4G34570
fragaria_vesca	FvH4_2g09370 FvH4_2g09370 FvH4_2g09370 FvH4_2g09370 FvH4_2g09370 FvH4_2g09370
malus_domestica	MD05G1063200.v1.1 MD10G1070700.v1.1
prunus_persica	Prupe.8G092500_v2.0.a1 Prupe.8G092500_v2.0.a1
pyrus_communis	pycom05g05460 pycom05g05470 pycom10g05650
rosa_chinensis	RchiOBHm_Chr6g0265641
rosa_laevigata	RLG00000014170
rosa_multiflora	Rmu_sc0003233.1_g000014 Rmu_sc0003233.1_g000015 Rmu_sc0009907.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432460 Rroxscaffold_6G00388530 Rroxscaffold_7G00202550
rosa_rugosa	Rorug06G0018100
rosa_samantha	Rh1BG086900 Rh3BG370300 Rh3CG367200 Rh6AG140100 Rh6BG140000 Rh6CG137100 Rh6DG123400
rosa_wichuraiana	Rw6G012050 Rw6G012100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AccII	CGCG	1 cut(s)	39
AciI	CCGC	6 cut(s)	11, 29, 37, 146, 344, 369
AclWI	GGATC	3 cut(s)	602, 1038, 1051
AcoI	YGGCCR	1 cut(s)	838
AcsI	RAATTY	2 cut(s)	312, 1070
AcuI	CTGAAG	2 cut(s)	254, 1056
AcyI	GRCGYC	1 cut(s)	688
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	683
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	382, 420, 914
AjnI	CCWGG	4 cut(s)	164, 682, 868, 959
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	7 cut(s)	475, 731, 781, 788, 857, 1108, 1115
AluI	AGCT	7 cut(s)	475, 731, 781, 788, 857, 1108, 1115
Alw26I	GTCTC	1 cut(s)	896
AlwI	GGATC	3 cut(s)	602, 1038, 1051
Ama87I	CYCGRG	1 cut(s)	516
AoxI	GGCC	6 cut(s)	153, 336, 674, 765, 838, 866
ApeKI	GCWGC	3 cut(s)	284, 509, 788
ApoI	RAATTY	2 cut(s)	312, 1070
AspS9I	GGNCC	2 cut(s)	371, 866
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	1 cut(s)	443
AvaI	CYCGRG	1 cut(s)	516
AvaII	GGWCC	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	840
BamHI	GGATCC	1 cut(s)	1043
BbvI	GCAGC	3 cut(s)	271, 496, 775
BccI	CCATC	2 cut(s)	309, 533
BcgI	CGANNNNNNTGC	2 cut(s)	1000, 1034
BciT130I	CCWGG	4 cut(s)	166, 684, 870, 961
BcnI	CCSGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	896
BfmI	CTRYAG	1 cut(s)	735
BglII	AGATCT	1 cut(s)	1096
BisI	GCNGC	3 cut(s)	285, 510, 789
BlsI	GCNGC	3 cut(s)	286, 511, 790
Bme1390I	CCNGG	5 cut(s)	166, 612, 684, 870, 961
Bme18I	GGWCC	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	516
BmgT120I	GGNCC	2 cut(s)	371, 866
BmiI	GGNNCC	2 cut(s)	163, 1045
BmrFI	CCNGG	5 cut(s)	166, 612, 684, 870, 961
BmsI	GCATC	2 cut(s)	679, 868
BplI	GAGNNNNNCTC	2 cut(s)	841, 873
BpmI	CTGGAG	1 cut(s)	797
Bpu10I	CCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	1 cut(s)	612
BsaHI	GRCGYC	1 cut(s)	688
BsaI	GGTCTC	1 cut(s)	896
BsaJI	CCNNGG	4 cut(s)	156, 551, 959, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	683
Bse3DI	GCAATG	1 cut(s)	466
BseBI	CCWGG	4 cut(s)	166, 684, 870, 961
BseDI	CCNNGG	4 cut(s)	156, 551, 959, 978
BseGI	GGATG	4 cut(s)	301, 544, 592, 927
BseLI	CCNNNNNNNGG	1 cut(s)	683
BseMI	GCAATG	1 cut(s)	466
BseMII	CTCAG	2 cut(s)	117, 657
BseRI	GAGGAG	1 cut(s)	1042
BseXI	GCAGC	3 cut(s)	271, 496, 775
BseYI	CCCAGC	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	6 cut(s)	155, 338, 676, 767, 840, 868
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	612
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	683
BsmAI	GTCTC	1 cut(s)	896
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	3 cut(s)	628, 657, 993
BsnI	GGCC	6 cut(s)	155, 338, 676, 767, 840, 868
Bso31I	GGTCTC	1 cut(s)	896
BsoBI	CYCGRG	1 cut(s)	516
Bsp143I	GATC	6 cut(s)	332, 568, 607, 1043, 1063, 1096
BspACI	CCGC	6 cut(s)	11, 29, 37, 146, 344, 369
BspANI	GGCC	6 cut(s)	155, 338, 676, 767, 840, 868
BspCNI	CTCAG	2 cut(s)	116, 658
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	163, 1045
BspMAI	CTGCAG	1 cut(s)	739
BspPI	GGATC	3 cut(s)	602, 1038, 1051
BspTNI	GGTCTC	1 cut(s)	896
BsrDI	GCAATG	1 cut(s)	466
BssECI	CCNNGG	4 cut(s)	156, 551, 959, 978
BssMI	GATC	6 cut(s)	332, 568, 607, 1043, 1063, 1096
BssNI	GRCGYC	1 cut(s)	688
BssT1I	CCWWGG	3 cut(s)	156, 551, 978
Bst2UI	CCWGG	4 cut(s)	166, 684, 870, 961
Bst4CI	ACNGT	7 cut(s)	47, 235, 326, 445, 595, 803, 949
Bst6I	CTCTTC	2 cut(s)	109, 223
BstACI	GRCGYC	1 cut(s)	688
BstDEI	CTNAG	3 cut(s)	103, 666, 1086
BstF5I	GGATG	4 cut(s)	301, 544, 592, 927
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	6 cut(s)	335, 571, 610, 1046, 1066, 1099
BstMAI	GTCTC	1 cut(s)	896
BstMBI	GATC	6 cut(s)	332, 568, 607, 1043, 1063, 1096
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 293
BstNI	CCWGG	4 cut(s)	166, 684, 870, 961
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	5 cut(s)	164, 610, 682, 868, 959
BstSFI	CTRYAG	1 cut(s)	735
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	3 cut(s)	271, 496, 775
BstX2I	RGATCY	3 cut(s)	607, 1043, 1096
BstYI	RGATCY	3 cut(s)	607, 1043, 1096
BsuRI	GGCC	6 cut(s)	155, 338, 676, 767, 840, 868
BtsCI	GGATG	4 cut(s)	301, 544, 592, 927
BtsIMutI	CAGTG	4 cut(s)	87, 231, 591, 945
Cfr13I	GGNCC	2 cut(s)	371, 866
CseI	GACGC	2 cut(s)	28, 696
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	4 cut(s)	71, 76, 648, 763
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	3 cut(s)	103, 666, 1086
DpnI	GATC	6 cut(s)	334, 570, 609, 1045, 1065, 1098
DpnII	GATC	6 cut(s)	332, 568, 607, 1043, 1063, 1096
EaeI	YGGCCR	1 cut(s)	838
Eam1104I	CTCTTC	2 cut(s)	109, 223
EarI	CTCTTC	2 cut(s)	109, 223
EciI	GGCGGA	1 cut(s)	44
Eco130I	CCWWGG	3 cut(s)	156, 551, 978
Eco31I	GGTCTC	1 cut(s)	896
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	2 cut(s)	254, 1056
Eco88I	CYCGRG	1 cut(s)	516
EcoRII	CCWGG	4 cut(s)	164, 682, 868, 959
EcoT14I	CCWWGG	3 cut(s)	156, 551, 978
ErhI	CCWWGG	3 cut(s)	156, 551, 978
FaeI	CATG	4 cut(s)	74, 79, 651, 766
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	4 cut(s)	70, 75, 647, 762
FauI	CCCGC	1 cut(s)	18
FauNDI	CATATG	1 cut(s)	752
Fnu4HI	GCNGC	3 cut(s)	285, 510, 789
FokI	GGATG	4 cut(s)	288, 551, 599, 914
Fsp4HI	GCNGC	3 cut(s)	285, 510, 789
GluI	GCNGC	3 cut(s)	285, 510, 789
GsaI	CCCAGC	1 cut(s)	475
GsuI	CTGGAG	1 cut(s)	797
HaeIII	GGCC	6 cut(s)	155, 338, 676, 767, 840, 868
HapII	CCGG	1 cut(s)	612
HgaI	GACGC	2 cut(s)	28, 696
Hin1I	GRCGYC	1 cut(s)	688
Hin1II	CATG	4 cut(s)	74, 79, 651, 766
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	1113
HinfI	GANTC	6 cut(s)	92, 99, 397, 478, 706, 941
HpaII	CCGG	1 cut(s)	612
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	2 cut(s)	6, 43
Hpy188I	TCNGA	5 cut(s)	106, 568, 607, 705, 1036
Hpy188III	TCNNGA	5 cut(s)	96, 352, 518, 776, 1009
Hpy8I	GTNNAC	2 cut(s)	6, 43
HpyAV	CCTTC	1 cut(s)	573
HpyCH4III	ACNGT	7 cut(s)	47, 235, 326, 445, 595, 803, 949
HpyCH4V	TGCA	6 cut(s)	512, 626, 737, 881, 935, 1054
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 293
HpyF3I	CTNAG	3 cut(s)	103, 666, 1086
Hsp92I	GRCGYC	1 cut(s)	688
Hsp92II	CATG	4 cut(s)	74, 79, 651, 766
Kzo9I	GATC	6 cut(s)	332, 568, 607, 1043, 1063, 1096
LmnI	GCTCC	6 cut(s)	209, 252, 324, 759, 778, 1113
Lsp1109I	GCAGC	3 cut(s)	271, 496, 775
LweI	GCATC	2 cut(s)	679, 868
MaeIII	GTNAC	3 cut(s)	439, 589, 595
MalI	GATC	6 cut(s)	334, 570, 609, 1045, 1065, 1098
MboI	GATC	6 cut(s)	332, 568, 607, 1043, 1063, 1096
MboII	GAAGA	6 cut(s)	53, 123, 126, 151, 210, 260
MfeI	CAATTG	2 cut(s)	810, 936
MflI	RGATCY	3 cut(s)	607, 1043, 1096
MlsI	TGGCCA	1 cut(s)	840
MluCI	AATT	9 cut(s)	241, 264, 312, 358, 627, 810, 882, 936, 1070
MluNI	TGGCCA	1 cut(s)	840
MlyI	GAGTC	4 cut(s)	93, 101, 406, 700
MmeI	TCCRAC	1 cut(s)	1021
Mox20I	TGGCCA	1 cut(s)	840
MscI	TGGCCA	1 cut(s)	840
MseI	TTAA	2 cut(s)	582, 693
MslI	CAYNNNNRTG	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	840
MspA1I	CMGCKG	1 cut(s)	475
MspI	CCGG	1 cut(s)	612
MspR9I	CCNGG	5 cut(s)	166, 612, 684, 870, 961
MunI	CAATTG	2 cut(s)	810, 936
Mva1269I	GAATGC	3 cut(s)	628, 657, 993
MvaI	CCWGG	4 cut(s)	166, 684, 870, 961
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	152, 293
NciI	CCSGG	1 cut(s)	612
NdeI	CATATG	1 cut(s)	752
NdeII	GATC	6 cut(s)	332, 568, 607, 1043, 1063, 1096
NlaIII	CATG	4 cut(s)	74, 79, 651, 766
NlaIV	GGNNCC	2 cut(s)	163, 1045
NmuCI	GTSAC	2 cut(s)	439, 589
NspI	RCATGY	1 cut(s)	74
PaeR7I	CTCGAG	1 cut(s)	516
PciI	ACATGT	1 cut(s)	70
PctI	GAATGC	3 cut(s)	628, 657, 993
PfeI	GAWTC	2 cut(s)	478, 941
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	3 cut(s)	286, 511, 790
PleI	GAGTC	4 cut(s)	93, 100, 405, 700
PpsI	GAGTC	4 cut(s)	93, 100, 405, 700
PscI	ACATGT	1 cut(s)	70
PsiI	TTATAA	1 cut(s)	632
Psp6I	CCWGG	4 cut(s)	164, 682, 868, 959
PspFI	CCCAGC	1 cut(s)	471
PspGI	CCWGG	4 cut(s)	164, 682, 868, 959
PspN4I	GGNNCC	2 cut(s)	163, 1045
PspPI	GGNCC	2 cut(s)	371, 866
PstI	CTGCAG	1 cut(s)	739
PsuI	RGATCY	3 cut(s)	607, 1043, 1096
PvuII	CAGCTG	1 cut(s)	475
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	582, 693
SatI	GCNGC	3 cut(s)	285, 510, 789
Sau3AI	GATC	6 cut(s)	332, 568, 607, 1043, 1063, 1096
Sau96I	GGNCC	2 cut(s)	371, 866
SchI	GAGTC	4 cut(s)	93, 101, 406, 700
ScrFI	CCNGG	5 cut(s)	166, 612, 684, 870, 961
SfaNI	GCATC	2 cut(s)	679, 868
SfcI	CTRYAG	1 cut(s)	735
Sfr274I	CTCGAG	1 cut(s)	516
SinI	GGWCC	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	516
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	2 cut(s)	516, 572
SmoI	CTYRAG	2 cut(s)	516, 572
Sse9I	AATT	9 cut(s)	241, 264, 312, 358, 627, 810, 882, 936, 1070
SsiI	CCGC	6 cut(s)	11, 29, 37, 146, 344, 369
StyD4I	CCNGG	5 cut(s)	164, 610, 682, 868, 959
StyI	CCWWGG	3 cut(s)	156, 551, 978
TaaI	ACNGT	7 cut(s)	47, 235, 326, 445, 595, 803, 949
TaqI	TCGA	2 cut(s)	517, 1062
TasI	AATT	9 cut(s)	241, 264, 312, 358, 627, 810, 882, 936, 1070
TfiI	GAWTC	2 cut(s)	478, 941
Tru1I	TTAA	2 cut(s)	582, 693
Tru9I	TTAA	2 cut(s)	582, 693
TscAI	CASTG	4 cut(s)	87, 238, 598, 952
TseFI	GTSAC	2 cut(s)	439, 589
TseI	GCWGC	3 cut(s)	284, 509, 788
Tsp45I	GTSAC	2 cut(s)	439, 589
TspDTI	ATGAA	2 cut(s)	916, 957
TspRI	CASTG	4 cut(s)	87, 238, 598, 952
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	2 cut(s)	312, 1070
XceI	RCATGY	1 cut(s)	74
XhoI	CTCGAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.