Rroxscaffold_6G00388530

Dehydrodolichyl diphosphate syntase complex subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
1504758 .. 1506993
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388530.1

Sequence Viewer

Length: 249 bp
ATGGAGCTTCTTCTATGGGTAGAAGCTATTGGTGTGAAGCATGTGTGCTTCTATGATGCAGAAGGAGTGTTGAAGAAATTAAAAGAAGTCATCTTGAAGAAACTGAAAAATGCAATAGCATTCGAGGACATCAAACAACTTGGGTTCTCTTCGTCTCATCCTCCTCTAGAAGTCGTGGAAGAATTGAAGCAAGATTCGAGCGTGGAAGGAGCTACATCAACCGGAAGAGGCTACGGCGGAGTCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.98

Weight (kDa)

5.62

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 237
AgsI TTSAA 3 cut(s) 73, 97, 187
AluBI AGCT 3 cut(s) 7, 26, 212
AluI AGCT 3 cut(s) 7, 26, 212
Alw26I GTCTC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 167
BmsI GCATC 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 221
BseGI GGATG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 153
BsiSI CCGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 119
BspACI CCGC 1 cut(s) 237
Bst6I CTCTTC 2 cut(s) 154, 220
BstF5I GGATG 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 159
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 44
BtsCI GGATG 1 cut(s) 157
CviAII CATG 1 cut(s) 41
CviJI RGCY 4 cut(s) 7, 26, 212, 231
CviKI_1 RGCY 4 cut(s) 7, 26, 212, 231
Eam1104I CTCTTC 2 cut(s) 154, 220
EarI CTCTTC 2 cut(s) 154, 220
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 1 cut(s) 44
FaiI YATR 3 cut(s) 16, 42, 54
FatI CATG 1 cut(s) 40
FokI GGATG 1 cut(s) 144
FspBI CTAG 1 cut(s) 167
HapII CCGG 1 cut(s) 222
Hin1II CATG 1 cut(s) 44
HinfI GANTC 2 cut(s) 194, 240
HpaII CCGG 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 94, 167
HpyAV CCTTC 2 cut(s) 56, 200
HpyCH4V TGCA 2 cut(s) 59, 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
Hsp92II CATG 1 cut(s) 44
LmnI GCTCC 2 cut(s) 4, 209
LpnPI CCDG 1 cut(s) 235
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 167
MboII GAAGA 5 cut(s) 85, 109, 141, 191, 237
MluCI AATT 2 cut(s) 77, 182
MlyI GAGTC 1 cut(s) 249
MnlI CCTC 4 cut(s) 118, 171, 174, 221
MseI TTAA 1 cut(s) 80
MspI CCGG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 243
NlaIII CATG 1 cut(s) 44
NspI RCATGY 1 cut(s) 44
PctI GAATGC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 194
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 80
SchI GAGTC 1 cut(s) 249
SetI ASST 3 cut(s) 9, 28, 214
SfaNI GCATC 1 cut(s) 46
Sse9I AATT 2 cut(s) 77, 182
SsiI CCGC 1 cut(s) 237
SspMI CTAG 1 cut(s) 167
TaqI TCGA 2 cut(s) 123, 197
TasI AATT 2 cut(s) 77, 182
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
XbaI TCTAGA 1 cut(s) 166
XceI RCATGY 1 cut(s) 44
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.