Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002969

Physical Location & Seq

Genomic Coordinates Forward (+)

46406123 .. 46410582

Gene Structure 4460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG367200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCTGATGGATTTGAGGTATGAAATGCAGAGGGCAACCTCTTTTGTTGCTCAAACTGGCAATCCTAGGCTTCTGCTACTCTGGCATATTCCGCATCTTTTTGTAATATCTACTCTGGCAATTGTAGTAGAAAGTGAAGACACATGGGAAATCTCCAAAATTATGGCGCTTCTTCTATGGGTAGAAGCTATTGGTGTGAAGAATGTGTGCTTCTATGACGCAGAAGGAGTGTTGAAGAAATTAAAAGAAGTCACCTTGAAGAAACTGAAAAGATTGCAAGAATTATACGGAACAATGGCTGTCCTCTCTTTAAAACTTTATGCCTCAGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.71

Weight (kDa)

8.73

Isoelectric Point (pI)

27.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16370 AT2G16370 AT2G16370 AT4G34570 AT4G34570 AT4G34570 AT4G34570
fragaria_vesca	FvH4_2g09370 FvH4_2g09370 FvH4_2g09370 FvH4_2g09370 FvH4_2g09370 FvH4_2g09370
malus_domestica	MD05G1063200.v1.1 MD10G1070700.v1.1
prunus_persica	Prupe.8G092500_v2.0.a1 Prupe.8G092500_v2.0.a1
pyrus_communis	pycom05g05460 pycom05g05470 pycom10g05650
rosa_chinensis	RchiOBHm_Chr6g0265641
rosa_laevigata	RLG00000014170
rosa_multiflora	Rmu_sc0003233.1_g000014 Rmu_sc0003233.1_g000015 Rmu_sc0009907.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432460 Rroxscaffold_6G00388530 Rroxscaffold_7G00202550
rosa_rugosa	Rorug06G0018100
rosa_samantha	Rh1BG086900 Rh3BG370300 Rh3CG367200 Rh6AG140100 Rh6BG140000 Rh6CG137100 Rh6DG123400
rosa_wichuraiana	Rw6G012050 Rw6G012100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	235, 259
AluBI	AGCT	2 cut(s)	188, 333
AluI	AGCT	2 cut(s)	188, 333
AspA2I	CCTAGG	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	244
AvrII	CCTAGG	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	170
BlnI	CCTAGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	61
BspACI	CCGC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	325
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 91
BstV2I	GAAGAC	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	163
CfoI	GCGC	1 cut(s)	169
CseI	GACGC	1 cut(s)	227
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	4 cut(s)	70, 188, 299, 333
CviKI_1	RGCY	4 cut(s)	70, 188, 299, 333
DdeI	CTNAG	1 cut(s)	325
DraI	TTTAAA	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	1 cut(s)	147
FaiI	YATR	8 cut(s)	21, 87, 145, 164, 178, 216, 286, 321
FatI	CATG	1 cut(s)	143
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	170
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HphI	GGTGA	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	28, 277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 91
HpyF3I	CTNAG	1 cut(s)	325
Hsp92II	CATG	1 cut(s)	147
HspAI	GCGC	1 cut(s)	167
LpnPI	CCDG	3 cut(s)	42, 67, 101
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	250
MboII	GAAGA	5 cut(s)	149, 164, 211, 247, 271
MfeI	CAATTG	1 cut(s)	120
MluCI	AATT	4 cut(s)	120, 159, 239, 281
MnlI	CCTC	5 cut(s)	9, 24, 49, 314, 334
MseI	TTAA	2 cut(s)	242, 311
MunI	CAATTG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	82, 91
NlaIII	CATG	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	242, 311
SetI	ASST	5 cut(s)	20, 41, 190, 257, 335
SfaNI	GCATC	1 cut(s)	103
SgeI	CNNG	7 cut(s)	69, 78, 94, 128, 156, 268, 290
Sse9I	AATT	4 cut(s)	120, 159, 239, 281
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	65
TasI	AATT	4 cut(s)	120, 159, 239, 281
Tru1I	TTAA	2 cut(s)	242, 311
Tru9I	TTAA	2 cut(s)	242, 311
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	303
XmaJI	CCTAGG	1 cut(s)	65
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.