Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003233.1

Orthogroup ID

OG0002969

Physical Location & Seq

Genomic Coordinates Forward (+)

48606 .. 49124

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003233.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgggcctgggcgtgccatttaacattgcgtcatatgcgcttctgacatgcatgattgctcatgtctgtgatcttgttccaggagatttcgttcacgttttaggggatgctcatatttaccgcactcacatcaggcctctgcaggagcaacttcagaaactgcccaagcctcttccaattttgaagatcaatcccgataaaaagaatatagattcatttgtggcagctgatttcgaactcataggttataatcctcatgagaagatagaaatgaaaatggctgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004146 GO:0004799 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0009058 GO:0009108 GO:0009256 GO:0009257 GO:0009396 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019752 GO:0032259 GO:0034641 GO:0042083 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00670 ko00790 ko01100 map00240 map00670 map00790 map01100

Pfam Domains

Protein Families

DHFR_1 Thymidylat_synt

Protein Analysis

95

Amino Acids

10.66

Weight (kDa)

6.49

Isoelectric Point (pI)

59.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16370 AT2G16370 AT2G16370 AT4G34570 AT4G34570 AT4G34570 AT4G34570
fragaria_vesca	FvH4_2g09370 FvH4_2g09370 FvH4_2g09370 FvH4_2g09370 FvH4_2g09370 FvH4_2g09370
malus_domestica	MD05G1063200.v1.1 MD10G1070700.v1.1
prunus_persica	Prupe.8G092500_v2.0.a1 Prupe.8G092500_v2.0.a1
pyrus_communis	pycom05g05460 pycom05g05470 pycom10g05650
rosa_chinensis	RchiOBHm_Chr6g0265641
rosa_laevigata	RLG00000014170
rosa_multiflora	Rmu_sc0003233.1_g000014 Rmu_sc0003233.1_g000015 Rmu_sc0009907.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432460 Rroxscaffold_6G00388530 Rroxscaffold_7G00202550
rosa_rugosa	Rorug06G0018100
rosa_samantha	Rh1BG086900 Rh3BG370300 Rh3CG367200 Rh6AG140100 Rh6BG140000 Rh6CG137100 Rh6DG123400
rosa_wichuraiana	Rw6G012050 Rw6G012100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AciI	CCGC	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	6, 79
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	160
AoxI	GGCC	2 cut(s)	4, 134
ApeKI	GCWGC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	4
AsuII	TTCGAA	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	8, 81
BfmI	CTRYAG	1 cut(s)	140
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	8, 81
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	8, 81
BmsI	GCATC	1 cut(s)	97
Bpu14I	TTCGAA	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	8, 81
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	236
BshFI	GGCC	2 cut(s)	6, 136
BsnI	GGCC	2 cut(s)	6, 136
Bsp119I	TTCGAA	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	70, 186
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	6, 136
BspHI	TCATGA	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	144
BspT104I	TTCGAA	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	2 cut(s)	70, 186
Bst2UI	CCWGG	2 cut(s)	8, 81
Bst6I	CTCTTC	1 cut(s)	177
BstBI	TTCGAA	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	73, 189
BstMBI	GATC	2 cut(s)	70, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	2 cut(s)	8, 81
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	6, 79
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	6, 136
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	14
CaiI	CAGNNNCTG	1 cut(s)	160
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	18
CviAII	CATG	4 cut(s)	48, 52, 62, 257
CviJI	RGCY	5 cut(s)	6, 136, 169, 227, 281
CviKI_1	RGCY	5 cut(s)	6, 136, 169, 227, 281
DpnI	GATC	2 cut(s)	72, 188
DpnII	GATC	2 cut(s)	70, 186
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	6, 79
EcoT22I	ATGCAT	1 cut(s)	53
FaeI	CATG	4 cut(s)	51, 55, 65, 260
FatI	CATG	4 cut(s)	47, 51, 61, 256
FauNDI	CATATG	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	225
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	6, 136
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	4 cut(s)	51, 55, 65, 260
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	45, 156
Hpy188III	TCNNGA	2 cut(s)	194, 257
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	51, 142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	4 cut(s)	51, 55, 65, 260
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	70, 186
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	5 cut(s)	20, 66, 93, 118, 128
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	1 cut(s)	97
MaeII	ACGT	1 cut(s)	96
MalI	GATC	2 cut(s)	72, 188
MboI	GATC	2 cut(s)	70, 186
MboII	GAAGA	3 cut(s)	164, 196, 274
MluCI	AATT	1 cut(s)	177
MnlI	CCTC	3 cut(s)	147, 180, 264
Mph1103I	ATGCAT	1 cut(s)	53
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	8, 81
MvaI	CCWGG	2 cut(s)	8, 81
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeI	CATATG	1 cut(s)	34
NdeII	GATC	2 cut(s)	70, 186
NlaIII	CATG	4 cut(s)	51, 55, 65, 260
NsiI	ATGCAT	1 cut(s)	53
NspI	RCATGY	1 cut(s)	51
NspV	TTCGAA	1 cut(s)	234
PagI	TCATGA	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	212
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	226
PsiI	TTATAA	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	6, 79
PspGI	CCWGG	2 cut(s)	6, 79
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	70, 186
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	8, 81
SetI	ASST	3 cut(s)	99, 229, 247
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	140
SfuI	TTCGAA	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	177
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	6, 79
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	204, 287
XceI	RCATGY	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.