Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002969

Physical Location & Seq

Genomic Coordinates Forward (+)

2411984 .. 2417184

Gene Structure 5201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0018100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAGCTCCAATAAAACTCCGGTTGGGTTTAGGGTTTTGGGGCAGCGTTCACTTTCTTCATCATTTTCTTCTCGCTGTCAAATCCCTGTCAAGGTCGCAGACGATGATGCGGATAAGGTCTCACATGGGTCGCTCTCGGACATTTCAGAACAGAGGCTGAAGCACAATTCTGGAACACCCAAGACAGTTAAGGTGAAGTCACGGCCATTCTCGTCGTTATTGGATCTGAAAGATCTAAGTGGGTCCACTGATGAGCAAATTGAGGCCAAGAAAGGAGGGGAAGCAGAGAAGAGTTCTGTAGCATTGGCATTTGAAAAATTTAAGCACACTGATATAGGAAAAGGGCAATCTAAAGTTTCAAAAATTGCTGGTGAAGTAGAATGTCCTGACGAAGATGATTTACCAGAATCAAGAAAAAGGAGACACCCTTGTAAAGATGGGGATGACAAACACACTGCGAGAAAGTATTTTGCAGTTCTTGGAGGTGATCAAATACCCAAGCTAAAAAAGAGAAGGGCTGAGAGTCTCATAATCCAAGAGAAACCGGGACATGTTTATGATCACTATGAAAATGGTTGTGGCTGGTGGGACTGCAATATGGAGGGTATTGACAATGAAGAAGTTGGTGTCAATGAGGTGTGGGAAGGAGTGGGCTCAACCACATTGGGAGGAATAGAGTGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004146 GO:0004799 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0009058 GO:0009108 GO:0009256 GO:0009257 GO:0009396 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019752 GO:0032259 GO:0034641 GO:0042083 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00670 ko00790 ko01100 map00240 map00670 map00790 map01100

Pfam Domains

Protein Families

DHFR_1 Thymidylat_synt

Protein Analysis

228

Amino Acids

25.15

Weight (kDa)

6.26

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16370 AT2G16370 AT2G16370 AT4G34570 AT4G34570 AT4G34570 AT4G34570
fragaria_vesca	FvH4_2g09370 FvH4_2g09370 FvH4_2g09370 FvH4_2g09370 FvH4_2g09370 FvH4_2g09370
malus_domestica	MD05G1063200.v1.1 MD10G1070700.v1.1
prunus_persica	Prupe.8G092500_v2.0.a1 Prupe.8G092500_v2.0.a1
pyrus_communis	pycom05g05460 pycom05g05470 pycom10g05650
rosa_chinensis	RchiOBHm_Chr6g0265641
rosa_laevigata	RLG00000014170
rosa_multiflora	Rmu_sc0003233.1_g000014 Rmu_sc0003233.1_g000015 Rmu_sc0009907.1_g000015
rosa_roxburghii	Rroxscaffold_175G00432460 Rroxscaffold_6G00388530 Rroxscaffold_7G00202550
rosa_rugosa	Rorug06G0018100
rosa_samantha	Rh1BG086900 Rh3BG370300 Rh3CG367200 Rh6AG140100 Rh6BG140000 Rh6CG137100 Rh6DG123400
rosa_wichuraiana	Rw6G012050 Rw6G012100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	91
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	2 cut(s)	314, 360
AluBI	AGCT	2 cut(s)	6, 502
AluI	AGCT	2 cut(s)	6, 502
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	124, 415, 530
AlwI	GGATC	1 cut(s)	231
AlwNI	CAGNNNCTG	1 cut(s)	157
AoxI	GGCC	2 cut(s)	203, 264
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	243
AsuC2I	CCSGG	1 cut(s)	546
AsuHPI	GGTGA	3 cut(s)	205, 383, 497
AvaII	GGWCC	1 cut(s)	243
BanII	GRGCYC	2 cut(s)	8, 656
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	431
BceAI	ACGGC	1 cut(s)	218
BclI	TGATCA	2 cut(s)	487, 559
BcnI	CCSGG	1 cut(s)	546
BcoDI	GTCTC	3 cut(s)	124, 415, 530
BfmI	CTRYAG	1 cut(s)	297
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	1 cut(s)	97
BpuMI	CCSGG	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	510
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	205, 266
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	20, 545
BslFI	GGGAC	2 cut(s)	561, 602
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	3 cut(s)	124, 415, 530
BsmFI	GGGAC	2 cut(s)	561, 602
BsnI	GGCC	2 cut(s)	205, 266
Bso31I	GGTCTC	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	8, 656
Bsp143I	GATC	4 cut(s)	223, 232, 487, 559
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	2 cut(s)	205, 266
BspCNI	CTCAG	1 cut(s)	511
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	124
BssMI	GATC	4 cut(s)	223, 232, 487, 559
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	236, 519
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	4 cut(s)	226, 235, 490, 562
BstMAI	GTCTC	3 cut(s)	124, 415, 530
BstMBI	GATC	4 cut(s)	223, 232, 487, 559
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	2 cut(s)	223, 232
BstYI	RGATCY	2 cut(s)	223, 232
BsuRI	GGCC	2 cut(s)	205, 266
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	3 cut(s)	246, 327, 453
CaiI	CAGNNNCTG	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	243
CviAII	CATG	2 cut(s)	125, 551
CviJI	RGCY	8 cut(s)	6, 157, 205, 266, 502, 518, 582, 654
CviKI_1	RGCY	8 cut(s)	6, 157, 205, 266, 502, 518, 582, 654
DdeI	CTNAG	2 cut(s)	236, 519
DpnI	GATC	4 cut(s)	225, 234, 489, 561
DpnII	GATC	4 cut(s)	223, 232, 487, 559
EaeI	YGGCCR	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	2 cut(s)	8, 656
Eco31I	GGTCTC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	8, 656
FaeI	CATG	2 cut(s)	128, 554
FaiI	YATR	7 cut(s)	126, 335, 530, 552, 558, 567, 599
FaqI	GGGAC	2 cut(s)	561, 602
FatI	CATG	2 cut(s)	124, 550
FbaI	TGATCA	2 cut(s)	487, 559
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	2 cut(s)	8, 656
Fsp4HI	GCNGC	1 cut(s)	44
GluI	GCNGC	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	205, 266
HapII	CCGG	2 cut(s)	20, 545
Hin1II	CATG	2 cut(s)	128, 554
HinfI	GANTC	2 cut(s)	407, 523
HpaII	CCGG	2 cut(s)	20, 545
HphI	GGTGA	3 cut(s)	205, 383, 497
Hpy166II	GTNNAC	2 cut(s)	50, 246
Hpy188I	TCNGA	3 cut(s)	139, 148, 228
Hpy188III	TCNNGA	3 cut(s)	171, 386, 411
Hpy8I	GTNNAC	2 cut(s)	50, 246
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	507, 638
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	473, 594
HpyF3I	CTNAG	2 cut(s)	236, 519
Hsp92II	CATG	2 cut(s)	128, 554
Ksp22I	TGATCA	2 cut(s)	487, 559
Kzo9I	GATC	4 cut(s)	223, 232, 487, 559
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	8 cut(s)	33, 99, 156, 354, 399, 417, 558, 568
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	4 cut(s)	225, 234, 489, 561
MboI	GATC	4 cut(s)	223, 232, 487, 559
MboII	GAAGA	5 cut(s)	48, 60, 301, 404, 629
MflI	RGATCY	2 cut(s)	223, 232
MhlI	GDGCHC	2 cut(s)	8, 656
MluCI	AATT	4 cut(s)	166, 258, 317, 363
MlyI	GAGTC	1 cut(s)	532
MnlI	CCTC	7 cut(s)	147, 256, 269, 476, 595, 628, 662
MseI	TTAA	2 cut(s)	189, 321
MslI	CAYNNNNRTG	1 cut(s)	555
MspI	CCGG	2 cut(s)	20, 545
MspR9I	CCNGG	1 cut(s)	546
NciI	CCSGG	1 cut(s)	546
NdeII	GATC	4 cut(s)	223, 232, 487, 559
NlaIII	CATG	2 cut(s)	128, 554
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	198
NspI	RCATGY	1 cut(s)	554
PciI	ACATGT	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
PscI	ACATGT	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	223, 232
RseI	CAYNNNNRTG	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	189, 321
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	4 cut(s)	223, 232, 487, 559
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	2 cut(s)	8, 656
SetI	ASST	7 cut(s)	8, 96, 120, 195, 487, 504, 639
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	555
Sse9I	AATT	4 cut(s)	166, 258, 317, 363
SsiI	CCGC	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	544
TaaI	ACNGT	1 cut(s)	187
TasI	AATT	4 cut(s)	166, 258, 317, 363
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	189, 321
Tru9I	TTAA	2 cut(s)	189, 321
TscAI	CASTG	3 cut(s)	253, 334, 460
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	3 cut(s)	48, 582, 630
TspRI	CASTG	3 cut(s)	253, 334, 460
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.