Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003259.1

Orthogroup ID

OG0011622

Physical Location & Seq

Genomic Coordinates Forward (+)

23895 .. 24730

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003259.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgtgcaaatactttatcacagtaactaaagaagacaaacaaagccactccgtgagaccaaaaccaaggagaacgcagtctttgcctcatgttttggctttcattcctgagcaagtgcgccacctccacgccactcactcgccggagttcctcagcctccgattcatctacactgttgggcctctcaaagaatcgagctctggttcagatctcgtgatcagagtttggccacagaggcagagcttcaataaccacgacttcggttcggttccatcccaatggaagatgaaccagactacggaattcgactgtgatggtgggtacaaggccgacggtgatggctgcgaagctgcatgtgcttgcgattttgctaaagcaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

127

Amino Acids

14.33

Weight (kDa)

7.69

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011622)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000721 RLG00000001756 RLG00000022317 RLG00000033262
rosa_multiflora	Rmu_sc0003259.1_g000012
rosa_roxburghii	Rroxscaffold_3G00220710 Rroxscaffold_3G00245530
rosa_rugosa	Rorug05G0151500
rosa_samantha	Rh1BG024000 Rh1BG401400 Rh1DG431600 Rh2AG368500 Rh2BG554100 Rh2DG200800 Rh2DG559100 Rh3AG095200 Rh3CG099500 Rh3DG193000 Rh6AG458300 Rh7BG457500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	302
AdeI	CACNNNGTG	1 cut(s)	52
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	4 cut(s)	198, 243, 350, 381
AluI	AGCT	4 cut(s)	198, 243, 350, 381
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	49
AoxI	GGCC	3 cut(s)	179, 227, 327
ApeKI	GCWGC	2 cut(s)	342, 350
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	347
BalI	TGGCCA	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	200
BauI	CACGAG	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	329, 337
BccI	CCATC	3 cut(s)	280, 308, 332
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	49
BglI	GCCNNNNNGGC	1 cut(s)	235
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	2 cut(s)	343, 351
BlsI	GCNGC	2 cut(s)	344, 352
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	39
Bpu10I	CCTNAGC	2 cut(s)	108, 152
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	2 cut(s)	99, 166
BseXI	GCAGC	2 cut(s)	329, 337
BshFI	GGCC	3 cut(s)	181, 229, 329
BsiHKAI	GWGCWC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	181, 229, 329
Bso31I	GGTCTC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	2 cut(s)	208, 216
BspANI	GGCC	3 cut(s)	181, 229, 329
BspCNI	CTCAG	2 cut(s)	100, 165
BspLI	GGNNCC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	2 cut(s)	208, 216
BssSI	CACGAG	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	65
Bst2BI	CACGAG	1 cut(s)	212
Bst4CI	ACNGT	4 cut(s)	22, 175, 311, 335
BstAPI	GCANNNNNTGC	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	361, 379
BstDEI	CTNAG	2 cut(s)	108, 152
BstF5I	GGATG	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	2 cut(s)	211, 219
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	2 cut(s)	208, 216
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 235, 356
BstNSI	RCATGY	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	329, 337
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	3 cut(s)	181, 229, 329
BtsCI	GGATG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	361, 379
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	2 cut(s)	89, 354
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	108, 152
DpnI	GATC	2 cut(s)	210, 218
DpnII	GATC	2 cut(s)	208, 216
DraIII	CACNNNGTG	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	2 cut(s)	92, 357
FaiI	YATR	2 cut(s)	90, 355
FatI	CATG	2 cut(s)	88, 353
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	343, 351
FokI	GGATG	1 cut(s)	259
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	2 cut(s)	343, 351
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	2 cut(s)	343, 351
HaeIII	GGCC	3 cut(s)	181, 229, 329
HapII	CCGG	1 cut(s)	143
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	92, 357
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	162, 191
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	1 cut(s)	347
Hpy188I	TCNGA	3 cut(s)	161, 208, 221
Hpy188III	TCNNGA	2 cut(s)	107, 214
Hpy99I	CGWCG	1 cut(s)	335
HpyCH4III	ACNGT	4 cut(s)	22, 175, 311, 335
HpyCH4V	TGCA	2 cut(s)	6, 353
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 235, 356
HpyF3I	CTNAG	2 cut(s)	108, 152
Hsp92II	CATG	2 cut(s)	92, 357
HspAI	GCGC	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	208, 216
LpnPI	CCDG	4 cut(s)	120, 156, 186, 305
Lsp1109I	GCAGC	2 cut(s)	329, 337
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	2 cut(s)	210, 218
MboI	GATC	2 cut(s)	208, 216
MboII	GAAGA	2 cut(s)	44, 295
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	200
MlsI	TGGCCA	1 cut(s)	229
MluCI	AATT	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	229
MnlI	CCTC	6 cut(s)	96, 134, 161, 167, 192, 228
Mox20I	TGGCCA	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	229
MslI	CAYNNNNRTG	1 cut(s)	277
Msp20I	TGGCCA	1 cut(s)	229
MspI	CCGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	3 cut(s)	82, 235, 356
NdeII	GATC	2 cut(s)	208, 216
NlaIII	CATG	2 cut(s)	92, 357
NlaIV	GGNNCC	1 cut(s)	270
NspI	RCATGY	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	162, 191
PkrI	GCNGC	2 cut(s)	344, 352
Psp124BI	GAGCTC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	277
SacI	GAGCTC	1 cut(s)	200
SatI	GCNGC	2 cut(s)	343, 351
Sau3AI	GATC	2 cut(s)	208, 216
Sau96I	GGNCC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	5 cut(s)	126, 200, 245, 352, 383
SmiMI	CAYNNNNRTG	1 cut(s)	277
Sse9I	AATT	1 cut(s)	302
SstI	GAGCTC	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	4 cut(s)	22, 175, 311, 335
TaqI	TCGA	2 cut(s)	194, 306
TasI	AATT	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	162, 191
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	2 cut(s)	342, 350
TspDTI	ATGAA	3 cut(s)	91, 154, 302
TspGWI	ACGGA	2 cut(s)	40, 314
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.