Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011622

Physical Location & Seq

Genomic Coordinates Forward (+)

76258667 .. 76260501

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG554100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCTTGTTTTGTCATTTAGGTGGCTGGTGAAGATAAGAAGGGTCTTATCTCTTTTCGAGAAAGCTGATGTTACTACTGCCCCAGATGTTGAAAAGGGGAATAAGGAGGATGATGATGACAGAATACTGAATGAAATGGAAGAGATTACAAACACTATGGAGCGCAAGAAGAAATGGGAAAAAAAGCTTCAAGCAAAGAAACGTGCTCAGGTGTCACTACTTCTGAAAGAGAGTTTCATTGACTCATTTCCTAGTCATGATCGACCATTTATGAAGGTGTGTTCCTTGACATTTCCTCTTGTTTTTTGTGATCAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000460 GO:0000463 GO:0000466 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008650 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0030684 GO:0030687 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3381 FtsJ Spb1_C

Protein Analysis

106

Amino Acids

12.52

Weight (kDa)

8.58

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011622)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000721 RLG00000001756 RLG00000022317 RLG00000033262
rosa_multiflora	Rmu_sc0003259.1_g000012
rosa_roxburghii	Rroxscaffold_3G00220710 Rroxscaffold_3G00245530
rosa_rugosa	Rorug05G0151500
rosa_samantha	Rh1BG024000 Rh1BG401400 Rh1DG431600 Rh2AG368500 Rh2BG554100 Rh2DG200800 Rh2DG559100 Rh3AG095200 Rh3CG099500 Rh3DG193000 Rh6AG458300 Rh7BG457500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	92, 191
AluBI	AGCT	2 cut(s)	65, 187
AluI	AGCT	2 cut(s)	65, 187
Alw21I	GWGCWC	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	208
BclI	TGATCA	1 cut(s)	310
BfaI	CTAG	1 cut(s)	252
Bpu10I	CCTNAGC	1 cut(s)	207
BseGI	GGATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	259, 310
BspCNI	CTCAG	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	256
BssMI	GATC	2 cut(s)	259, 310
Bst6I	CTCTTC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	2 cut(s)	262, 313
BstMBI	GATC	2 cut(s)	259, 310
BtsCI	GGATG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	1 cut(s)	165
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	3 cut(s)	25, 65, 187
CviKI_1	RGCY	3 cut(s)	25, 65, 187
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	261, 312
DpnII	GATC	2 cut(s)	259, 310
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
FaeI	CATG	1 cut(s)	260
FaiI	YATR	3 cut(s)	158, 258, 272
FatI	CATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	310
FokI	GGATG	1 cut(s)	122
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	242
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	2 cut(s)	58, 257
HpyAV	CCTTC	2 cut(s)	33, 268
HpyCH4IV	ACGT	1 cut(s)	202
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	259, 310
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	3 cut(s)	11, 96, 194
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	2 cut(s)	70, 213
MalI	GATC	2 cut(s)	261, 312
MboI	GATC	2 cut(s)	259, 310
MboII	GAAGA	3 cut(s)	43, 152, 181
MhlI	GDGCHC	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	2 cut(s)	100, 306
MseI	TTAA	1 cut(s)	319
MslI	CAYNNNNRTG	1 cut(s)	19
NdeII	GATC	2 cut(s)	259, 310
NlaIII	CATG	1 cut(s)	260
NmuCI	GTSAC	1 cut(s)	213
PagI	TCATGA	1 cut(s)	256
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	319
Sau3AI	GATC	2 cut(s)	259, 310
SchI	GAGTC	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	6 cut(s)	23, 67, 189, 205, 213, 279
SmiMI	CAYNNNNRTG	1 cut(s)	19
SspMI	CTAG	1 cut(s)	252
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	57, 262
Tru1I	TTAA	1 cut(s)	319
Tru9I	TTAA	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	3 cut(s)	147, 226, 287
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.