Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0011622

Physical Location & Seq

Genomic Coordinates Forward (+)

54167635 .. 54175747

Gene Structure 8113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG457500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGATCAACAGGTTATAATTCTATGTGATGATCTGCGTGTTTTGGGGAAGCAAGATTTCAGGCATCTTTTGAAGTGGCTGGTGCAGATAAGAAGGGCCTTATCTCTTTCTGAGAAAGCTGATGTTACTACTGCCCCAGATGTTGAAAAGGGGAATAAGGTGGATGATGATGACAGAATACTGAATGAAATGGAAGAGATTACAAACACTATGGAGCGCAAGAAGAAACGGGAAAAAAAGCTTCAAGCAAAGAAACGTGCTCAGGTGTCACTACTTCTGAAAGAGAGTTTCATCGACTCATTTCCTAGTCGTGATCGACCATTTATGAAGGAGTTCCTCGATCTCCGGTTCACAGACACTACTGGGCTTCTCAAAGAATCGGACTCTGGTTCAGATCTCATGATCAGAGTTTGGCCACATAGGCAGAGCTTCAACAACCACGACCTCGGTCCGGTACCATCTAAATGGAAGATGAACCAGACTACGGCATCCGACGGTGATGGCGGCGACGCTGCACGCGGTTGCGATTTTACTGAAGCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000460 GO:0000463 GO:0000466 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008650 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0030684 GO:0030687 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3381 FtsJ Spb1_C

Protein Analysis

181

Amino Acids

20.75

Weight (kDa)

6.33

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3381	PF11861	4 - 88	1.9e-17	Ribosomal RNA methyltransferase Spb1, DUF3381

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011622)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000721 RLG00000001756 RLG00000022317 RLG00000033262
rosa_multiflora	Rmu_sc0003259.1_g000012
rosa_roxburghii	Rroxscaffold_3G00220710 Rroxscaffold_3G00245530
rosa_rugosa	Rorug05G0151500
rosa_samantha	Rh1BG024000 Rh1BG401400 Rh1DG431600 Rh2AG368500 Rh2BG554100 Rh2DG200800 Rh2DG559100 Rh3AG095200 Rh3CG099500 Rh3DG193000 Rh6AG458300 Rh7BG457500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
Acc65I	GGTACC	1 cut(s)	454
AccB1I	GGYRCC	1 cut(s)	454
AccII	CGCG	1 cut(s)	519
AciI	CCGC	2 cut(s)	504, 519
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	413
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	2 cut(s)	451, 484
AgsI	TTSAA	4 cut(s)	73, 146, 245, 433
AluBI	AGCT	3 cut(s)	119, 241, 429
AluI	AGCT	3 cut(s)	119, 241, 429
Alw21I	GWGCWC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	96, 413
ApeKI	GCWGC	1 cut(s)	512
Asp700I	GAANNNNTTC	1 cut(s)	332
Asp718I	GGTACC	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	96, 449
AsuHPI	GGTGA	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	449
BalI	TGGCCA	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	454
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	2 cut(s)	466, 494
BceAI	ACGGC	1 cut(s)	501
BclI	TGATCA	1 cut(s)	402
BfaI	CTAG	1 cut(s)	306
BglI	GCCNNNNNGGC	1 cut(s)	421
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	2 cut(s)	505, 513
BlsI	GCNGC	2 cut(s)	506, 514
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	96, 449
BmiI	GGNNCC	1 cut(s)	456
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	73, 497
BmuI	ACTGGG	1 cut(s)	372
BoxI	GACNNNNGTC	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	445
BsaWI	WCCGGW	2 cut(s)	345, 451
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 484
Bse1I	ACTGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	2 cut(s)	169, 488
BseLI	CCNNNNNNNGG	2 cut(s)	451, 484
BseMII	CTCAG	2 cut(s)	102, 275
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	499
BsgI	GTGCAG	2 cut(s)	104, 498
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	2 cut(s)	98, 415
BshNI	GGYRCC	1 cut(s)	454
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	346, 452
BslI	CCNNNNNNNGG	2 cut(s)	451, 484
BsnI	GGCC	2 cut(s)	98, 415
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	6 cut(s)	4, 31, 313, 340, 394, 402
BspACI	CCGC	2 cut(s)	504, 519
BspANI	GGCC	2 cut(s)	98, 415
BspCNI	CTCAG	2 cut(s)	103, 274
BspFNI	CGCG	1 cut(s)	519
BspHI	TCATGA	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	6 cut(s)	4, 31, 313, 340, 394, 402
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	517, 541
BstDEI	CTNAG	2 cut(s)	111, 261
BstF5I	GGATG	2 cut(s)	169, 488
BstFNI	CGCG	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	6 cut(s)	7, 34, 316, 343, 397, 405
BstMBI	GATC	6 cut(s)	4, 31, 313, 340, 394, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstPAI	GACNNNNGTC	1 cut(s)	447
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	499
BstX2I	RGATCY	1 cut(s)	394
BstXI	CCANNNNNNTGG	1 cut(s)	465
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	98, 415
BtsCI	GGATG	2 cut(s)	169, 488
Cac8I	GCNNGC	2 cut(s)	517, 541
CciI	TCATGA	1 cut(s)	399
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	2 cut(s)	96, 449
CpoI	CGGWCCG	1 cut(s)	449
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	455
CspI	CGGWCCG	1 cut(s)	449
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	8 cut(s)	79, 98, 119, 241, 367, 415, 429, 543
CviKI_1	RGCY	8 cut(s)	79, 98, 119, 241, 367, 415, 429, 543
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	2 cut(s)	111, 261
DpnI	GATC	6 cut(s)	6, 33, 315, 342, 396, 404
DpnII	GATC	6 cut(s)	4, 31, 313, 340, 394, 402
EaeI	YGGCCR	1 cut(s)	413
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	96
FaeI	CATG	1 cut(s)	403
FaiI	YATR	6 cut(s)	17, 25, 212, 326, 401, 420
FatI	CATG	1 cut(s)	399
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	505, 513
FokI	GGATG	2 cut(s)	176, 475
Fsp4HI	GCNGC	2 cut(s)	505, 513
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	2 cut(s)	505, 513
HaeIII	GGCC	2 cut(s)	98, 415
HapII	CCGG	2 cut(s)	346, 452
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	3 cut(s)	296, 377, 383
HpaII	CCGG	2 cut(s)	346, 452
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	6 cut(s)	112, 279, 382, 394, 407, 493
Hpy188III	TCNNGA	2 cut(s)	311, 400
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	2 cut(s)	497, 512
HpyAV	CCTTC	2 cut(s)	87, 322
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	85, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	2 cut(s)	111, 261
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	1 cut(s)	217
KpnI	GGTACC	1 cut(s)	458
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	6 cut(s)	4, 31, 313, 340, 394, 402
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	73, 497
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	124, 267
MalI	GATC	6 cut(s)	6, 33, 315, 342, 396, 404
MboI	GATC	6 cut(s)	4, 31, 313, 340, 394, 402
MboII	GAAGA	3 cut(s)	206, 235, 481
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	262
MlsI	TGGCCA	1 cut(s)	415
MluCI	AATT	1 cut(s)	18
MluNI	TGGCCA	1 cut(s)	415
MlyI	GAGTC	2 cut(s)	290, 377
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	2 cut(s)	347, 455
Mox20I	TGGCCA	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	415
MslI	CAYNNNNRTG	1 cut(s)	463
Msp20I	TGGCCA	1 cut(s)	415
MspI	CCGG	2 cut(s)	346, 452
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	421
NdeII	GATC	6 cut(s)	4, 31, 313, 340, 394, 402
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	1 cut(s)	267
PagI	TCATGA	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	2 cut(s)	506, 514
PleI	GAGTC	2 cut(s)	290, 377
PpsI	GAGTC	2 cut(s)	290, 377
PshAI	GACNNNNGTC	1 cut(s)	447
PsiI	TTATAA	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	2 cut(s)	96, 449
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	463
Rsr2I	CGGWCCG	1 cut(s)	449
RsrII	CGGWCCG	1 cut(s)	449
SatI	GCNGC	2 cut(s)	505, 513
Sau3AI	GATC	6 cut(s)	4, 31, 313, 340, 394, 402
Sau96I	GGNCC	2 cut(s)	96, 449
SchI	GAGTC	2 cut(s)	290, 377
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	8 cut(s)	15, 121, 162, 243, 259, 267, 431, 447
SfaNI	GCATC	2 cut(s)	73, 497
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	463
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	2 cut(s)	504, 519
SspMI	CTAG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	3 cut(s)	294, 316, 339
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	1 cut(s)	18
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	1 cut(s)	377
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	4 cut(s)	201, 280, 341, 488
VpaK11BI	GGWCC	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.