Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011622

Physical Location & Seq

Genomic Coordinates Forward (+)

78842846 .. 78843982

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG559100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGATGTGGCTGGCGCAGATAAGAAGGGTCTTATCTCTTTTTGAGAAAGCTGATGTTACTACTGCCCCAAATGTTGAAAAGGGGAATAAGGAGGATGATGATGACAGAATACTGAATGAAATGGAAGAGATTACAAACACTATGGAGCGCAAGAAGAAACGGGAAAAAAAGCTTCAAGCAAAGAAACGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000460 GO:0000463 GO:0000466 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008650 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0030684 GO:0030687 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3381 FtsJ Spb1_C

Protein Analysis

64

Amino Acids

7.62

Weight (kDa)

9.39

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011622)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000721 RLG00000001756 RLG00000022317 RLG00000033262
rosa_multiflora	Rmu_sc0003259.1_g000012
rosa_roxburghii	Rroxscaffold_3G00220710 Rroxscaffold_3G00245530
rosa_rugosa	Rorug05G0151500
rosa_samantha	Rh1BG024000 Rh1BG401400 Rh1DG431600 Rh2AG368500 Rh2BG554100 Rh2DG200800 Rh2DG559100 Rh3AG095200 Rh3CG099500 Rh3DG193000 Rh6AG458300 Rh7BG457500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	77, 176
AluBI	AGCT	2 cut(s)	50, 172
AluI	AGCT	2 cut(s)	50, 172
AspLEI	GCGC	2 cut(s)	16, 150
BseGI	GGATG	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	16, 150
BtsCI	GGATG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	12
CfoI	GCGC	2 cut(s)	16, 150
CviJI	RGCY	3 cut(s)	10, 50, 172
CviKI_1	RGCY	3 cut(s)	10, 50, 172
DdeI	CTNAG	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
FaiI	YATR	1 cut(s)	143
FokI	GGATG	1 cut(s)	107
GlaI	GCGC	2 cut(s)	15, 149
HhaI	GCGC	2 cut(s)	16, 150
Hin6I	GCGC	2 cut(s)	14, 148
HinP1I	GCGC	2 cut(s)	14, 148
HindIII	AAGCTT	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	187
HspAI	GCGC	2 cut(s)	14, 148
LmnI	GCTCC	1 cut(s)	145
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	137, 166
MnlI	CCTC	1 cut(s)	85
SetI	ASST	3 cut(s)	52, 174, 190
SgeI	CNNG	4 cut(s)	23, 163, 173, 188
TaiI	ACGT	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.