Rh1DG431600

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0011622
Physical Location & Seq
Forward (+)
64431407 .. 64450499
19093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG431600.1

Sequence Viewer

Length: 1131 bp
ATGTTTATGGATCAACAGGTTATAATTCTATGTGATGATCTGCGTGTTTTGGGGAAGCGAGATTTCAGGCATCTTTTGAAGTGGCTGGTGCAGATAAGAAGGGCCTTATCTCTTTCCGAGAAAGCTGATGTTACTACTGCCCCAGATGTTGAAAAGGGGAATAAGGAGGATGATGATGACAGAATACTGAATGAAATGGAAGAGATTACAAACACTATGGAGCGCAAGAAGAAACGGGAAAAAAAGCTTCAAGCAAAGAAACGTGCTCAGAAAGACAAGGACGATGTGCATCATCAAAATGAACAGACTAGTAAATGTAGCAGCAGTAGTACTACTAGTACTATCATCGATGATGGCCATGGGCAGCTAGTTAATATTAATGCCGGGTTTAGGTGCAAGGTTGTGAGAATTCTTCCTTATGACGAGACATTTGAGTATGATACTTCCTCCGAATTCAAGGTGGAGATCTTTTCTTTTGAGATTGGTGAATGGAGAGAGTCCATTATATCATTCCCACACAAATTTTGTTACGATGAAATCAACCCAGATTTTCATTGGGCTTGCAATGGGATGTTGTATTGGTCGAGTTATCTTGACTTTGTTATCGGATTGAAACCGTTCATCATCAACGTTGGCCACAAAAACAGTACTAGTAGTAAAACTAGTAACCACTCCGGAGATGATCATTATGAATGTTGTTTCATGACAATAGTTAAAGACCCTGCATACTACAGATACAATACTGAGTGCCTATTTGCACGGGGCGGGTGTCTGCAGCGAATGTGTGGCTTAAGTAGAACCATGTATAGTAGTACTCTATGTTGGGTTTCGGAGTTGAAAAAGGAAGAAGATGATCGAATTGTGGCCAATGGAGCTTGGAGCAGGGAGTTTAATACGCGTCTTCGTCATCCTCAAGTAGTGGGGCTAATAGGTTTTGACCCAAACGATGAGAATGTCTTCTATTATACTGTCAATGGAAAAATATTCGAGCATAACATCCTTACAAGAATGAAGTCAAGGAGAAAGATGGCTCCTGGAGAGAGTATAAATAATTATTGCTTCTTCCCATTAACTGTGTTCCCATGGTGGCCGACACCAGTTCCTAGACTGCCAGAGCGATTAGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

376

Amino Acids

43.94

Weight (kDa)

6.43

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3381 PF11861 6 - 91 5.5e-16 Ribosomal RNA methyltransferase Spb1, DUF3381
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AccII CGCG 1 cut(s) 898
AccIII TCCGGA 1 cut(s) 674
AciI CCGC 1 cut(s) 765
AclI AACGTT 1 cut(s) 630
AclWI GGATC 1 cut(s) 18
AcoI YGGCCR 4 cut(s) 355, 634, 864, 1088
AcsI RAATTY 3 cut(s) 408, 452, 521
AfaI GTAC 4 cut(s) 331, 340, 649, 814
AfiI CCNNNNNNNGG 1 cut(s) 390
AflII CTTAAG 1 cut(s) 790
AflIII ACRYGT 1 cut(s) 896
AgsI TTSAA 6 cut(s) 79, 152, 251, 457, 613, 838
AhlI ACTAGT 4 cut(s) 308, 335, 650, 662
AjnI CCWGG 1 cut(s) 1033
AluBI AGCT 5 cut(s) 125, 247, 367, 875, 1128
AluI AGCT 5 cut(s) 125, 247, 367, 875, 1128
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 1 cut(s) 18
Aor13HI TCCGGA 1 cut(s) 674
AoxI GGCC 5 cut(s) 102, 355, 634, 864, 1088
ApeKI GCWGC 3 cut(s) 321, 364, 775
ApoI RAATTY 3 cut(s) 408, 452, 521
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AseI ATTAAT 1 cut(s) 378
Asp700I GAANNNNTTC 2 cut(s) 617, 956
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 102
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 497
BalI TGGCCA 3 cut(s) 357, 636, 866
BbsI GAAGAC 2 cut(s) 893, 949
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 3 cut(s) 333, 376, 787
BccI CCATC 2 cut(s) 347, 1021
BciT130I CCWGG 1 cut(s) 1035
BclI TGATCA 1 cut(s) 682
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 419
BcuI ACTAGT 4 cut(s) 308, 335, 650, 662
BfaI CTAG 7 cut(s) 309, 336, 368, 651, 663, 1104, 1129
BfmI CTRYAG 2 cut(s) 730, 773
BfrI CTTAAG 1 cut(s) 790
BglII AGATCT 1 cut(s) 465
BisI GCNGC 3 cut(s) 322, 365, 776
BlsI GCNGC 3 cut(s) 323, 366, 777
BmcAI AGTACT 4 cut(s) 331, 340, 649, 814
Bme1390I CCNGG 2 cut(s) 385, 1035
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 1032
BmrFI CCNGG 2 cut(s) 385, 1035
BmsI GCATC 2 cut(s) 79, 298
BpiI GAAGAC 2 cut(s) 893, 949
BpmI CTGGAG 1 cut(s) 1056
BpuEI CTTGAG 1 cut(s) 897
BpuMI CCSGG 1 cut(s) 385
Bsa29I ATCGAT 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 358, 1082
BsaWI WCCGGW 1 cut(s) 674
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse1I ACTGG 1 cut(s) 1097
Bse3DI GCAATG 1 cut(s) 571
Bse8I GATNNNNATC 1 cut(s) 288
BseAI TCCGGA 1 cut(s) 674
BseBI CCWGG 1 cut(s) 1035
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 358, 1082
BseGI GGATG 4 cut(s) 175, 576, 907, 996
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMI GCAATG 1 cut(s) 571
BseMII CTCAG 2 cut(s) 281, 735
BseNI ACTGG 1 cut(s) 1097
BseXI GCAGC 3 cut(s) 333, 376, 787
BsgI GTGCAG 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 898
BshFI GGCC 5 cut(s) 104, 357, 636, 866, 1090
BshVI ATCGAT 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 2 cut(s) 384, 675
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 1 cut(s) 419
BsnI GGCC 5 cut(s) 104, 357, 636, 866, 1090
Bsp1286I GDGCHC 1 cut(s) 268
Bsp13I TCCGGA 1 cut(s) 674
Bsp143I GATC 5 cut(s) 10, 37, 465, 682, 853
Bsp19I CCATGG 2 cut(s) 358, 1082
BspACI CCGC 1 cut(s) 765
BspANI GGCC 5 cut(s) 104, 357, 636, 866, 1090
BspCNI CTCAG 2 cut(s) 280, 736
BspDI ATCGAT 1 cut(s) 348
BspEI TCCGGA 1 cut(s) 674
BspFNI CGCG 1 cut(s) 898
BspHI TCATGA 1 cut(s) 702
BspLI GGNNCC 1 cut(s) 1032
BspMAI CTGCAG 1 cut(s) 777
BspPI GGATC 1 cut(s) 18
BspTI CTTAAG 1 cut(s) 790
BsrDI GCAATG 1 cut(s) 571
BsrI ACTGG 1 cut(s) 1097
BssECI CCNNGG 2 cut(s) 358, 1082
BssMI GATC 5 cut(s) 10, 37, 465, 682, 853
BssT1I CCWWGG 2 cut(s) 358, 1082
Bst2UI CCWGG 1 cut(s) 1035
Bst4CI ACNGT 4 cut(s) 618, 647, 970, 1075
Bst6I CTCTTC 1 cut(s) 195
BstAFI CTTAAG 1 cut(s) 790
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 2 cut(s) 267, 744
BstDSI CCRYGG 2 cut(s) 358, 1082
BstF5I GGATG 4 cut(s) 175, 576, 907, 996
BstFNI CGCG 1 cut(s) 898
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 5 cut(s) 13, 40, 468, 685, 856
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 5 cut(s) 10, 37, 465, 682, 853
BstMWI GCNNNNNNNGC 1 cut(s) 872
BstNI CCWGG 1 cut(s) 1035
BstSCI CCNGG 2 cut(s) 383, 1033
BstSFI CTRYAG 2 cut(s) 730, 773
BstUI CGCG 1 cut(s) 898
BstV1I GCAGC 3 cut(s) 333, 376, 787
BstV2I GAAGAC 2 cut(s) 893, 949
BstX2I RGATCY 1 cut(s) 465
BstYI RGATCY 1 cut(s) 465
Bsu15I ATCGAT 1 cut(s) 348
BsuRI GGCC 5 cut(s) 104, 357, 636, 866, 1090
BsuTUI ATCGAT 1 cut(s) 348
BtgI CCRYGG 2 cut(s) 358, 1082
BtsCI GGATG 4 cut(s) 175, 576, 907, 996
Cac8I GCNNGC 1 cut(s) 562
CciI TCATGA 1 cut(s) 702
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 102
ClaI ATCGAT 1 cut(s) 348
CseI GACGC 1 cut(s) 887
Csp6I GTAC 4 cut(s) 330, 339, 648, 813
CviAII CATG 4 cut(s) 359, 703, 802, 1083
CviQI GTAC 4 cut(s) 330, 339, 648, 813
DdeI CTNAG 2 cut(s) 267, 744
DpnI GATC 5 cut(s) 12, 39, 467, 684, 855
DpnII GATC 5 cut(s) 10, 37, 465, 682, 853
EaeI YGGCCR 4 cut(s) 355, 634, 864, 1088
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 358, 1082
EcoO109I RGGNCCY 1 cut(s) 102
EcoRI GAATTC 2 cut(s) 408, 452
EcoRII CCWGG 1 cut(s) 1033
EcoT14I CCWWGG 2 cut(s) 358, 1082
ErhI CCWWGG 2 cut(s) 358, 1082
FaeI CATG 4 cut(s) 362, 706, 805, 1086
FatI CATG 4 cut(s) 358, 702, 801, 1082
FauI CCCGC 1 cut(s) 758
FbaI TGATCA 1 cut(s) 682
Fnu4HI GCNGC 3 cut(s) 322, 365, 776
FokI GGATG 4 cut(s) 182, 583, 894, 983
Fsp4HI GCNGC 3 cut(s) 322, 365, 776
FspBI CTAG 7 cut(s) 309, 336, 368, 651, 663, 1104, 1129
GlaI GCGC 1 cut(s) 224
GluI GCNGC 3 cut(s) 322, 365, 776
GsuI CTGGAG 1 cut(s) 1056
HaeIII GGCC 5 cut(s) 104, 357, 636, 866, 1090
HapII CCGG 2 cut(s) 384, 675
HgaI GACGC 1 cut(s) 887
HhaI GCGC 1 cut(s) 225
Hin1II CATG 4 cut(s) 362, 706, 805, 1086
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 1 cut(s) 497
HpaII CCGG 2 cut(s) 384, 675
HphI GGTGA 1 cut(s) 497
Hpy188I TCNGA 5 cut(s) 118, 270, 451, 608, 832
Hpy188III TCNNGA 3 cut(s) 593, 675, 703
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 4 cut(s) 618, 647, 970, 1075
HpyCH4IV ACGT 2 cut(s) 262, 630
HpyCH4V TGCA 7 cut(s) 91, 289, 396, 564, 725, 758, 775
HpyF10VI GCNNNNNNNGC 1 cut(s) 872
HpyF3I CTNAG 2 cut(s) 267, 744
HpySE526I ACGT 2 cut(s) 262, 630
Hsp92II CATG 4 cut(s) 362, 706, 805, 1086
HspAI GCGC 1 cut(s) 223
Kpn2I TCCGGA 1 cut(s) 674
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 5 cut(s) 10, 37, 465, 682, 853
LmnI GCTCC 4 cut(s) 220, 872, 879, 1036
Lsp1109I GCAGC 3 cut(s) 333, 376, 787
LweI GCATC 2 cut(s) 79, 298
MaeI CTAG 7 cut(s) 309, 336, 368, 651, 663, 1104, 1129
MaeII ACGT 2 cut(s) 262, 630
MaeIII GTNAC 3 cut(s) 130, 527, 665
MalI GATC 5 cut(s) 12, 39, 467, 684, 855
MboI GATC 5 cut(s) 10, 37, 465, 682, 853
MboII GAAGA 8 cut(s) 212, 241, 404, 857, 860, 893, 949, 1054
MflI RGATCY 1 cut(s) 465
MhlI GDGCHC 1 cut(s) 268
MlsI TGGCCA 3 cut(s) 357, 636, 866
MluCI AATT 6 cut(s) 24, 408, 452, 521, 858, 1051
MluI ACGCGT 1 cut(s) 896
MluNI TGGCCA 3 cut(s) 357, 636, 866
MlyI GAGTC 1 cut(s) 506
MnlI CCTC 3 cut(s) 160, 457, 921
Mox20I TGGCCA 3 cut(s) 357, 636, 866
MroI TCCGGA 1 cut(s) 674
MroXI GAANNNNTTC 2 cut(s) 617, 956
MscI TGGCCA 3 cut(s) 357, 636, 866
MseI TTAA 6 cut(s) 372, 378, 714, 791, 891, 1070
MslI CAYNNNNRTG 1 cut(s) 297
Msp20I TGGCCA 3 cut(s) 357, 636, 866
MspCI CTTAAG 1 cut(s) 790
MspI CCGG 2 cut(s) 384, 675
MspR9I CCNGG 2 cut(s) 385, 1035
MvaI CCWGG 1 cut(s) 1035
MvnI CGCG 1 cut(s) 898
MwoI GCNNNNNNNGC 1 cut(s) 872
NciI CCSGG 1 cut(s) 385
NcoI CCATGG 2 cut(s) 358, 1082
NdeII GATC 5 cut(s) 10, 37, 465, 682, 853
NlaIII CATG 4 cut(s) 362, 706, 805, 1086
NlaIV GGNNCC 1 cut(s) 1032
PagI TCATGA 1 cut(s) 702
PdmI GAANNNNTTC 2 cut(s) 617, 956
PfoI TCCNGGA 1 cut(s) 1033
PkrI GCNGC 3 cut(s) 323, 366, 777
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PshBI ATTAAT 1 cut(s) 378
PsiI TTATAA 1 cut(s) 23
Psp1406I AACGTT 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 1033
PspGI CCWGG 1 cut(s) 1033
PspN4I GGNNCC 1 cut(s) 1032
PspPI GGNCC 1 cut(s) 102
PstI CTGCAG 1 cut(s) 777
PsuI RGATCY 1 cut(s) 465
RsaI GTAC 4 cut(s) 331, 340, 649, 814
RsaNI GTAC 4 cut(s) 330, 339, 648, 813
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 6 cut(s) 372, 378, 714, 791, 891, 1070
SatI GCNGC 3 cut(s) 322, 365, 776
Sau3AI GATC 5 cut(s) 10, 37, 465, 682, 853
Sau96I GGNCC 1 cut(s) 102
ScaI AGTACT 4 cut(s) 331, 340, 649, 814
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 2 cut(s) 385, 1035
SduI GDGCHC 1 cut(s) 268
SfaNI GCATC 2 cut(s) 79, 298
SfcI CTRYAG 2 cut(s) 730, 773
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 2 cut(s) 790, 912
SmoI CTYRAG 2 cut(s) 790, 912
SpeI ACTAGT 4 cut(s) 308, 335, 650, 662
Sse9I AATT 6 cut(s) 24, 408, 452, 521, 858, 1051
SsiI CCGC 1 cut(s) 765
SspI AATATT 2 cut(s) 376, 984
SspMI CTAG 7 cut(s) 309, 336, 368, 651, 663, 1104, 1129
StyD4I CCNGG 2 cut(s) 383, 1033
StyI CCWWGG 2 cut(s) 358, 1082
TaaI ACNGT 4 cut(s) 618, 647, 970, 1075
TaiI ACGT 2 cut(s) 265, 633
TaqI TCGA 4 cut(s) 348, 584, 856, 987
TasI AATT 6 cut(s) 24, 408, 452, 521, 858, 1051
TatI WGTACW 4 cut(s) 329, 338, 647, 812
Tru1I TTAA 6 cut(s) 372, 378, 714, 791, 891, 1070
Tru9I TTAA 6 cut(s) 372, 378, 714, 791, 891, 1070
TseI GCWGC 3 cut(s) 321, 364, 775
TspDTI ATGAA 8 cut(s) 207, 315, 542, 549, 610, 691, 705, 1025
Vha464I CTTAAG 1 cut(s) 790
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 3 cut(s) 408, 452, 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 552
XmnI GAANNNNTTC 2 cut(s) 617, 956
XspI CTAG 7 cut(s) 309, 336, 368, 651, 663, 1104, 1129
ZrmI AGTACT 4 cut(s) 331, 340, 649, 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.