Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0011622

Physical Location & Seq

Genomic Coordinates Forward (+)

7838060 .. 7840622

Gene Structure 2563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG099500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAAATTAGAGAACTTTCTGAGTGGTCTGGCTTATTTTCTTGTTATAATTCTATGTGATGATCTGCGTGTTTTGGGGAAGCAAGATTTCAGGCATCTTTTGAAGTGGCAGGTGCAGATAAGAAGGGCCTTATCTCTTTCCGAGAAAGCTGATGTTACTACTGCCCCAGATGTTGAAAAGGGGAATAAGGAGGATGATGATGACAGAATACTGAATGAAATGGAAGAGATTACAAACACTATGGAGCGCAAGAAGAAACGGGAAAAACAACTTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000460 GO:0000463 GO:0000466 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008650 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0030684 GO:0030687 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3381 FtsJ Spb1_C

Protein Analysis

93

Amino Acids

10.92

Weight (kDa)

5.85

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3381	PF11861	17 - 90	1.2e-16	Ribosomal RNA methyltransferase Spb1, DUF3381

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011622)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000721 RLG00000001756 RLG00000022317 RLG00000033262
rosa_multiflora	Rmu_sc0003259.1_g000012
rosa_roxburghii	Rroxscaffold_3G00220710 Rroxscaffold_3G00245530
rosa_rugosa	Rorug05G0151500
rosa_samantha	Rh1BG024000 Rh1BG401400 Rh1DG431600 Rh2AG368500 Rh2BG554100 Rh2DG200800 Rh2DG559100 Rh3AG095200 Rh3CG099500 Rh3DG193000 Rh6AG458300 Rh7BG457500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AarI	CACCTGC	1 cut(s)	100
Acc36I	ACCTGC	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	103, 176
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
AoxI	GGCC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	126
BmsI	GCATC	1 cut(s)	103
BseGI	GGATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	100
BssMI	GATC	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	199
BveI	ACCTGC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	126
CviJI	RGCY	3 cut(s)	32, 128, 149
CviKI_1	RGCY	3 cut(s)	32, 128, 149
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	126
FaiI	YATR	3 cut(s)	47, 55, 242
FokI	GGATG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	249
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	21, 142
HpyAV	CCTTC	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	115
HpyF3I	CTNAG	1 cut(s)	20
HspAI	GCGC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	4 cut(s)	14, 76, 95, 180
LweI	GCATC	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	236, 265
MluCI	AATT	2 cut(s)	5, 48
MnlI	CCTC	1 cut(s)	184
NdeII	GATC	1 cut(s)	61
PaqCI	CACCTGC	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	126
SetI	ASST	2 cut(s)	114, 151
SfaNI	GCATC	1 cut(s)	103
Sse9I	AATT	2 cut(s)	5, 48
TasI	AATT	2 cut(s)	5, 48
TspDTI	ATGAA	2 cut(s)	17, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.