Rroxscaffold_3G00245530

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
38553795 .. 38569371
15577 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00245530.1

Sequence Viewer

Length: 213 bp
ATGGAAGAGATTGCAAACACTATGGAGCGCAAGAAGAAACGGGAAAAAAAGGTTCAAGCAAAGAAACGTGCTCAGGGCAGTCTATCTTTAATTAGCTATGCTAACAATGAAGATCAAGTCTCAAAACACAATGGCCAACTACAATCCAACTCTGCTGGAAAGAGCAACACAATCCCCGATATATATATATATAGTTCTCAGGCAAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.89

Weight (kDa)

9.65

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 133
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 124
AoxI GGCC 1 cut(s) 133
AspLEI GCGC 1 cut(s) 30
BalI TGGCCA 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 72
BseMII CTCAG 2 cut(s) 86, 212
BshFI GGCC 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 124
BsnI GGCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 112
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 2 cut(s) 85, 211
BssMI GATC 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 72, 198
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 135
CfoI GCGC 1 cut(s) 30
CviJI RGCY 2 cut(s) 96, 135
CviKI_1 RGCY 2 cut(s) 96, 135
DdeI CTNAG 2 cut(s) 72, 198
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 133
FaiI YATR 8 cut(s) 23, 99, 182, 184, 186, 188, 190, 192
GlaI GCGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 135
HhaI GCGC 1 cut(s) 30
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 14
HpyF3I CTNAG 2 cut(s) 72, 198
HpySE526I ACGT 1 cut(s) 67
HspAI GCGC 1 cut(s) 28
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 3 cut(s) 59, 141, 185
MaeII ACGT 1 cut(s) 67
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 3 cut(s) 17, 46, 122
MhlI GDGCHC 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 135
MluCI AATT 1 cut(s) 90
MluNI TGGCCA 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 171
Mox20I TGGCCA 1 cut(s) 135
MscI TGGCCA 1 cut(s) 135
MseI TTAA 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 135
NdeII GATC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 89
Sau3AI GATC 1 cut(s) 112
SduI GDGCHC 1 cut(s) 73
SetI ASST 3 cut(s) 54, 70, 98
SgeI CNNG 8 cut(s) 43, 53, 68, 80, 86, 128, 168, 188
Sse9I AATT 1 cut(s) 90
TaiI ACGT 1 cut(s) 70
TasI AATT 1 cut(s) 90
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.