Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0011622

Physical Location & Seq

Genomic Coordinates Forward (+)

52523441 .. 52526688

Gene Structure 3248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG401400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGATCAACAGGTTATAATTCTATGTGATGATCTGCGTGTTTTGGGGAAGCGAGATTTCAGGCATCTTTTGAAGTGGCTGGTGCAGATAAGAAGGGCCTTATCTCTTTCCGAGAAAGCTGATGTTACTACTGCCCCAGATGTTGAAAAGGGGAATAAGGAGGATGATGATGACAGAATACTGAATGAAATGGAAGAGATTACAAACACTATGGAGCGCAAGAAGAAACGGGAAAAAAAGCTTCAAGCAAAGAAACGTGCTCAGGATGAGCATGATGAATCTGGGTGTTCTAAGATAGTTGTTCTAATTGGTGATTTTATTGGAATCGGATTGTATTTGCTTGGGTTTAAGCAATTGGGTCAAAAAAACTGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000460 GO:0000463 GO:0000466 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008650 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0030684 GO:0030687 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3381 FtsJ Spb1_C

Protein Analysis

125

Amino Acids

14.51

Weight (kDa)

7.74

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3381	PF11861	4 - 89	1.5e-17	Ribosomal RNA methyltransferase Spb1, DUF3381

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011622)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000721 RLG00000001756 RLG00000022317 RLG00000033262
rosa_multiflora	Rmu_sc0003259.1_g000012
rosa_roxburghii	Rroxscaffold_3G00220710 Rroxscaffold_3G00245530
rosa_rugosa	Rorug05G0151500
rosa_samantha	Rh1BG024000 Rh1BG401400 Rh1DG431600 Rh2AG368500 Rh2BG554100 Rh2DG200800 Rh2DG559100 Rh3AG095200 Rh3CG099500 Rh3DG193000 Rh6AG458300 Rh7BG457500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AclWI	GGATC	1 cut(s)	12
AgsI	TTSAA	3 cut(s)	73, 146, 245
AluBI	AGCT	2 cut(s)	119, 241
AluI	AGCT	2 cut(s)	119, 241
Alw21I	GWGCWC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	96
BmsI	GCATC	1 cut(s)	73
Bpu10I	CCTNAGC	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	374
BseGI	GGATG	2 cut(s)	169, 271
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	374
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	4, 31
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	274
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	374
BssMI	GATC	2 cut(s)	4, 31
Bst6I	CTCTTC	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	261, 291
BstF5I	GGATG	2 cut(s)	169, 271
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	2 cut(s)	7, 34
BstMBI	GATC	2 cut(s)	4, 31
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	169, 271
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	96
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	4 cut(s)	79, 98, 119, 241
CviKI_1	RGCY	4 cut(s)	79, 98, 119, 241
DdeI	CTNAG	2 cut(s)	261, 291
DpnI	GATC	2 cut(s)	6, 33
DpnII	GATC	2 cut(s)	4, 31
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	96
FaeI	CATG	1 cut(s)	275
FaiI	YATR	4 cut(s)	17, 25, 212, 273
FatI	CATG	1 cut(s)	271
FokI	GGATG	2 cut(s)	176, 278
GlaI	GCGC	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	2 cut(s)	278, 324
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	112, 329
Hpy188III	TCNNGA	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	1 cut(s)	85
HpyF3I	CTNAG	2 cut(s)	261, 291
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	1 cut(s)	275
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	4, 31
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	6 cut(s)	46, 65, 150, 248, 267, 355
LweI	GCATC	1 cut(s)	73
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	6, 33
MboI	GATC	2 cut(s)	4, 31
MboII	GAAGA	2 cut(s)	206, 235
MfeI	CAATTG	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	3 cut(s)	18, 306, 353
MnlI	CCTC	1 cut(s)	154
MseI	TTAA	2 cut(s)	348, 376
MunI	CAATTG	1 cut(s)	353
NdeII	GATC	2 cut(s)	4, 31
NlaIII	CATG	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	278, 324
PsiI	TTATAA	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	348, 376
Sau3AI	GATC	2 cut(s)	4, 31
Sau96I	GGNCC	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	4 cut(s)	15, 121, 243, 259
SfaNI	GCATC	1 cut(s)	73
Sse9I	AATT	3 cut(s)	18, 306, 353
TaiI	ACGT	1 cut(s)	259
TasI	AATT	3 cut(s)	18, 306, 353
TfiI	GAWTC	2 cut(s)	278, 324
Tru1I	TTAA	2 cut(s)	348, 376
Tru9I	TTAA	2 cut(s)	348, 376
TspDTI	ATGAA	2 cut(s)	201, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.