Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011622

Physical Location & Seq

Genomic Coordinates Forward (+)

7836411 .. 7840622

Gene Structure 4212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG095200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGATACTTGAGGTTATAATTCTATGTGATGATCTGCGTGTTTTGGGGAAGCAAGATTTCAGGCATCTTTTGAAGTGGCAGGTGCAGATAAGAAGGGCCTTATCTCTTTCCGAGAAAGCTGATGTTACTACTGCCCCAGATGTTGAAAAGGGGAATAAGGAGGATGATGATGACAGAATACTGAATGAAATGGAAGAGATTACAAACACTATGGAGCGCAAGAAGAAACGGGAAAAACAACTTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000460 GO:0000463 GO:0000466 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008650 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0030684 GO:0030687 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3381 FtsJ Spb1_C

Protein Analysis

83

Amino Acids

9.78

Weight (kDa)

5.42

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3381	PF11861	4 - 80	3.4e-17	Ribosomal RNA methyltransferase Spb1, DUF3381

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011622)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000721 RLG00000001756 RLG00000022317 RLG00000033262
rosa_multiflora	Rmu_sc0003259.1_g000012
rosa_roxburghii	Rroxscaffold_3G00220710 Rroxscaffold_3G00245530
rosa_rugosa	Rorug05G0151500
rosa_samantha	Rh1BG024000 Rh1BG401400 Rh1DG431600 Rh2AG368500 Rh2BG554100 Rh2DG200800 Rh2DG559100 Rh3AG095200 Rh3CG099500 Rh3DG193000 Rh6AG458300 Rh7BG457500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	73, 146
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AoxI	GGCC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	96
BmsI	GCATC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	31
BspANI	GGCC	1 cut(s)	98
BspMI	ACCTGC	1 cut(s)	70
BssMI	GATC	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	169
BveI	ACCTGC	1 cut(s)	70
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	96
CviJI	RGCY	2 cut(s)	98, 119
CviKI_1	RGCY	2 cut(s)	98, 119
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	96
FaiI	YATR	3 cut(s)	17, 25, 212
FokI	GGATG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	219
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	87
HpyCH4V	TGCA	1 cut(s)	85
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	3 cut(s)	46, 65, 150
LweI	GCATC	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	2 cut(s)	206, 235
MluCI	AATT	1 cut(s)	18
MnlI	CCTC	2 cut(s)	4, 154
NdeII	GATC	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	70
PsiI	TTATAA	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	96
SetI	ASST	3 cut(s)	15, 84, 121
SfaNI	GCATC	1 cut(s)	73
SgeI	CNNG	9 cut(s)	20, 50, 65, 73, 92, 124, 149, 232, 242
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	1 cut(s)	18
TasI	AATT	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.