Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011622

Physical Location & Seq

Genomic Coordinates Forward (+)

54700218 .. 54715580

Gene Structure 15363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG368500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAGAAGGAGATCCCAATACGAACCTACCTCGCCTCGGGGCTTTCAGCAAAGCACCGACAAGAGCTTCACACCTCCACAGACCCGAGTCGACGCCTCTTCACGTTGGTTGCACACTGTCTTCCATTTACATTAATGTTTATGGATCAACAGGTTATAATTCTATGTGATGATCTGCGTGTTTTGGGGAAGCGAGATTTCAGGCATCTTTTGAAGTGGCTGGTGCAGATAAGAAGGGCCTTATCTCTTTCGGAGAAAGCTGATGTTACTACTGCCCCAGATGTTGAAAAGGGGAATAAGGAGGATGATGATGACAGAATACTGAATGAAATGGAAGAGATTGCAAACACTATGGAGCGCAAGAAGAAACGGGAAAAAAAGCTTCAAGCAAAGAAACGTGCTCAGGTGTCACTACTTCTGAAAGAGAGTTTCATCGACTCATTTCCTAGTCGTGATCGACCATTTATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000460 GO:0000463 GO:0000466 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008650 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0030684 GO:0030687 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3381 FtsJ Spb1_C

Protein Analysis

157

Amino Acids

18.43

Weight (kDa)

9.42

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3381	PF11861	51 - 135	9.2e-18	Ribosomal RNA methyltransferase Spb1, DUF3381

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011622)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000721 RLG00000001756 RLG00000022317 RLG00000033262
rosa_multiflora	Rmu_sc0003259.1_g000012
rosa_roxburghii	Rroxscaffold_3G00220710 Rroxscaffold_3G00245530
rosa_rugosa	Rorug05G0151500
rosa_samantha	Rh1BG024000 Rh1BG401400 Rh1DG431600 Rh2AG368500 Rh2BG554100 Rh2DG200800 Rh2DG559100 Rh3AG095200 Rh3CG099500 Rh3DG193000 Rh6AG458300 Rh7BG457500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	91
AclWI	GGATC	2 cut(s)	7, 153
AcyI	GRCGYC	1 cut(s)	94
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	214, 287, 386
AluBI	AGCT	3 cut(s)	67, 260, 382
AluI	AGCT	3 cut(s)	67, 260, 382
Alw21I	GWGCWC	1 cut(s)	403
AlwI	GGATC	2 cut(s)	7, 153
Ama87I	CYCGRG	2 cut(s)	37, 85
AoxI	GGCC	1 cut(s)	237
AseI	ATTAAT	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	237
AvaI	CYCGRG	2 cut(s)	37, 85
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	403
BfaI	CTAG	1 cut(s)	447
BmeT110I	CYCGRG	2 cut(s)	37, 85
BmgT120I	GGNCC	1 cut(s)	237
BmsI	GCATC	1 cut(s)	214
BoxI	GACNNNNGTC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	416
BsgI	GTGCAG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	2 cut(s)	37, 85
BslI	CCNNNNNNNGG	1 cut(s)	37
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	2 cut(s)	37, 85
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	4 cut(s)	12, 145, 172, 454
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	415
BspPI	GGATC	2 cut(s)	7, 153
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	4 cut(s)	12, 145, 172, 454
BssNI	GRCGYC	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	2 cut(s)	104, 330
BstACI	GRCGYC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	4 cut(s)	15, 148, 175, 457
BstMBI	GATC	4 cut(s)	12, 145, 172, 454
BstPAI	GACNNNNGTC	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	237
CseI	GACGC	1 cut(s)	102
CviJI	RGCY	6 cut(s)	43, 67, 220, 239, 260, 382
CviKI_1	RGCY	6 cut(s)	43, 67, 220, 239, 260, 382
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	4 cut(s)	14, 147, 174, 456
DpnII	GATC	4 cut(s)	12, 145, 172, 454
Eam1104I	CTCTTC	2 cut(s)	104, 330
EarI	CTCTTC	2 cut(s)	104, 330
Eco88I	CYCGRG	2 cut(s)	37, 85
EcoO109I	RGGNCCY	1 cut(s)	237
FaiI	YATR	5 cut(s)	143, 158, 166, 353, 467
FblI	GTMKAC	1 cut(s)	91
FokI	GGATG	1 cut(s)	317
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	360
Hin1I	GRCGYC	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HincII	GTYRAC	1 cut(s)	92
HindII	GTYRAC	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	2 cut(s)	88, 437
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	253, 420
Hpy188III	TCNNGA	1 cut(s)	452
Hpy8I	GTNNAC	1 cut(s)	92
Hpy99I	CGWCG	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	2 cut(s)	104, 397
HpyCH4V	TGCA	3 cut(s)	113, 226, 344
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	2 cut(s)	104, 397
Hsp92I	GRCGYC	1 cut(s)	94
HspAI	GCGC	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	12, 145, 172, 454
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	5 cut(s)	137, 187, 206, 291, 389
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	2 cut(s)	104, 397
MaeIII	GTNAC	2 cut(s)	265, 408
MalI	GATC	4 cut(s)	14, 147, 174, 456
MboI	GATC	4 cut(s)	12, 145, 172, 454
MboII	GAAGA	4 cut(s)	91, 113, 347, 376
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	1 cut(s)	159
MlyI	GAGTC	2 cut(s)	97, 431
MnlI	CCTC	5 cut(s)	41, 46, 85, 107, 295
MseI	TTAA	1 cut(s)	134
NdeII	GATC	4 cut(s)	12, 145, 172, 454
NmuCI	GTSAC	1 cut(s)	408
PleI	GAGTC	2 cut(s)	96, 431
PpsI	GAGTC	2 cut(s)	96, 431
PshAI	GACNNNNGTC	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	134
PsiI	TTATAA	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	12
SalI	GTCGAC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	134
Sau3AI	GATC	4 cut(s)	12, 145, 172, 454
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	2 cut(s)	97, 431
SduI	GDGCHC	1 cut(s)	403
SfaNI	GCATC	1 cut(s)	214
Sse9I	AATT	1 cut(s)	159
SspMI	CTAG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	2 cut(s)	107, 400
TaqI	TCGA	3 cut(s)	91, 435, 457
TasI	AATT	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	1 cut(s)	122
TseFI	GTSAC	1 cut(s)	408
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	2 cut(s)	342, 421
TspRI	CASTG	1 cut(s)	122
VspI	ATTAAT	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	91
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.