Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011622

Physical Location & Seq

Genomic Coordinates Reverse (-)

14029018 .. 14029649

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0151500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGATGTTAATGCCGATGGTTTTGATCGAGGCTTTTCGGGTTTTGTGGCGATTCTGTGTGGCCTGGCTTATGCTCTTCAACGCATTTGGAATACTGAATGAGGAGAGGTTCCTTGCTCCGAGGGGGTACACATTGCGACACAGTCAATTGTTAGCGGCACTAAGAGAACGAGATTTTAGAGGGAGAAGGGACTGGAGGAGGATTATCAAGGCTGCGCTTATATTAATTTTGAATACCGCTCGTTTCCTGAATTTTATTCTCATAGGGTTAAACACCATCTGCATTGTCACACTACTCTTGTTCAACTCAACGATTATCAAGTTCAAGTTGTATTTTGCGGTTGTATTGCTCACAATTACTCTCTGCACCTACTTGAAGATGTATGTCCCCAAGATATTTGAGGAAAGAAAACCTGGGTTTGAAGGGATTCCTTGGAAAGCAGCTAGAATAGGTGAACGCTTGAGCCCCTGGATTGCTGCTGGATGTCTTATATCTTCGATTTCAATTATGTTTACATTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000460 GO:0000463 GO:0000466 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008650 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0030684 GO:0030687 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3381 FtsJ Spb1_C

Protein Analysis

174

Amino Acids

20.34

Weight (kDa)

10.38

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yos1	PF08571	15 - 101	4.9e-12	Yos1-like
DUF1242	PF06842	114 - 145	1.4e-07	Protein of unknown function (DUF1242)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011622)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000721 RLG00000001756 RLG00000022317 RLG00000033262
rosa_multiflora	Rmu_sc0003259.1_g000012
rosa_roxburghii	Rroxscaffold_3G00220710 Rroxscaffold_3G00245530
rosa_rugosa	Rorug05G0151500
rosa_samantha	Rh1BG024000 Rh1BG401400 Rh1DG431600 Rh2AG368500 Rh2BG554100 Rh2DG200800 Rh2DG559100 Rh3AG095200 Rh3CG099500 Rh3DG193000 Rh6AG458300 Rh7BG457500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	239
AciI	CCGC	3 cut(s)	155, 237, 338
AcsI	RAATTY	1 cut(s)	250
AfaI	GTAC	1 cut(s)	128
AgsI	TTSAA	7 cut(s)	79, 232, 304, 325, 376, 422, 504
AjnI	CCWGG	3 cut(s)	62, 412, 467
AluBI	AGCT	1 cut(s)	443
AluI	AGCT	1 cut(s)	443
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	3 cut(s)	212, 440, 476
ApoI	RAATTY	1 cut(s)	250
AseI	ATTAAT	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	467
BbvI	GCAGC	3 cut(s)	199, 452, 463
BccI	CCATC	2 cut(s)	10, 284
BciT130I	CCWGG	3 cut(s)	64, 414, 469
BfaI	CTAG	2 cut(s)	444, 523
BisI	GCNGC	4 cut(s)	156, 213, 441, 477
BlsI	GCNGC	4 cut(s)	157, 214, 442, 478
Bme1390I	CCNGG	3 cut(s)	64, 414, 469
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	3 cut(s)	64, 414, 469
BpmI	CTGGAG	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	481
BsaJI	CCNNGG	4 cut(s)	119, 413, 431, 467
Bse1I	ACTGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	3 cut(s)	64, 414, 469
BseDI	CCNNGG	4 cut(s)	119, 413, 431, 467
BseGI	GGATG	1 cut(s)	488
BseMI	GCAATG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	2 cut(s)	116, 211
BseXI	GCAGC	3 cut(s)	199, 452, 463
BsgI	GTGCAG	1 cut(s)	349
BshFI	GGCC	1 cut(s)	62
BslFI	GGGAC	2 cut(s)	203, 371
BsmFI	GGGAC	2 cut(s)	203, 371
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	3 cut(s)	155, 237, 338
BspANI	GGCC	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	80
BsrBI	CCGCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	4 cut(s)	119, 413, 431, 467
BssMI	GATC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	3 cut(s)	64, 414, 469
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstNI	CCWGG	3 cut(s)	64, 414, 469
BstSCI	CCNGG	3 cut(s)	62, 412, 467
BstV1I	GCAGC	3 cut(s)	199, 452, 463
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	488
CfoI	GCGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	127
CviJI	RGCY	6 cut(s)	32, 62, 67, 212, 443, 465
CviKI_1	RGCY	6 cut(s)	32, 62, 67, 212, 443, 465
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	467
EcoRII	CCWGG	3 cut(s)	62, 412, 467
EcoT14I	CCWWGG	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	431
FaiI	YATR	6 cut(s)	71, 221, 263, 384, 491, 509
FaqI	GGGAC	2 cut(s)	203, 371
Fnu4HI	GCNGC	4 cut(s)	156, 213, 441, 477
FokI	GGATG	1 cut(s)	495
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	4 cut(s)	156, 213, 441, 477
FspBI	CTAG	2 cut(s)	444, 523
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	4 cut(s)	156, 213, 441, 477
GsuI	CTGGAG	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	2 cut(s)	51, 427
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	3 cut(s)	129, 455, 513
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	247
Hpy8I	GTNNAC	3 cut(s)	129, 455, 513
HpyAV	CCTTC	2 cut(s)	180, 416
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	2 cut(s)	282, 366
HpyF3I	CTNAG	1 cut(s)	161
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	24
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	9 cut(s)	49, 76, 178, 260, 399, 426, 454, 465, 481
Lsp1109I	GCAGC	3 cut(s)	199, 452, 463
MaeI	CTAG	2 cut(s)	444, 523
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	26
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	1 cut(s)	24
MboII	GAAGA	3 cut(s)	67, 388, 486
MfeI	CAATTG	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	5 cut(s)	146, 225, 250, 354, 504
MnlI	CCTC	8 cut(s)	22, 94, 99, 114, 173, 189, 192, 394
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	3 cut(s)	8, 224, 269
MspR9I	CCNGG	3 cut(s)	64, 414, 469
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	3 cut(s)	64, 414, 469
NdeII	GATC	1 cut(s)	24
NlaIV	GGNNCC	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	286
PciSI	GCTCTTC	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	51, 427
PflFI	GACNNNGTC	1 cut(s)	141
PkrI	GCNGC	4 cut(s)	157, 214, 442, 478
PshBI	ATTAAT	1 cut(s)	224
Psp6I	CCWGG	3 cut(s)	62, 412, 467
PspGI	CCWGG	3 cut(s)	62, 412, 467
PspN4I	GGNNCC	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	141
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	8, 224, 269
SatI	GCNGC	4 cut(s)	156, 213, 441, 477
Sau3AI	GATC	1 cut(s)	24
ScrFI	CCNGG	3 cut(s)	64, 414, 469
SduI	GDGCHC	1 cut(s)	467
SetI	ASST	5 cut(s)	110, 371, 415, 445, 454
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	5 cut(s)	146, 225, 250, 354, 504
SsiI	CCGC	3 cut(s)	155, 237, 338
SspMI	CTAG	2 cut(s)	444, 523
StyD4I	CCNGG	3 cut(s)	62, 412, 467
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	2 cut(s)	27, 497
TasI	AATT	5 cut(s)	146, 225, 250, 354, 504
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	51, 427
Tru1I	TTAA	3 cut(s)	8, 224, 269
Tru9I	TTAA	3 cut(s)	8, 224, 269
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	3 cut(s)	212, 440, 476
Tsp45I	GTSAC	1 cut(s)	286
Tth111I	GACNNNGTC	1 cut(s)	141
VspI	ATTAAT	1 cut(s)	224
XapI	RAATTY	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	2 cut(s)	444, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.