Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003862.1

Orthogroup ID

OG0002968

Physical Location & Seq

Genomic Coordinates Reverse (-)

43266 .. 46635

Gene Structure 3370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1788 bp

atgttggttacatccgcccgtacagtcctcaggaggcggctttgctctattgagtatacgtcaaggagtaggaatagttgtagcagggcggcagctaattttgaagacaacaatggtattgggaggaacaaggagagcaggatgcaaccagagaccatggcttccggtggggataacgtctctgttactaaaggcgttgtttctagggttgaacctacacaatatgttcacggtgcaacccagcttatggcaatacagattgatgcagcaataaatcccgggaatagtggtagcccagcaatcatgggaaataaagttgatggttctggtgcagagaatattggttatataattcctgttcctgtaataaagcattttattgctggagttgaagaaagaggtaaatattatggagatggagatgaagatgaatatagagaccctttggtgagagaggtttgtaggttaattgagcttagaacagcttggaccccaaagtttgaaggtgaattaaggcacttgttacgaagcttgaagccaaagcaggtttgtgctgttttgaagtctcaggctgatgaaagagttgctttggaggttttctactgggctgataggcagtggaggtataagcatgacccaattgtgtactatgcaatgcttgaggtgcttagtaagaccaagttgtgccaaggtgctaggaggattcttaggttaatggcccgtaggcggattgagcttcgttctgaagcttttggtcatgtgatggtggatcaagctaaaaagatgcttcagcacatgtataagcatgggtgcaagccaaatactgtattatatacggccataataaatgggctttgtcatggtgggaacttattggaggcaagggagatgatgaacatgagtgaggaagaatggtggacaccaaatgccatcacttacagtgttctgatgcatgggttccggagggaagggaaattggttgaggcttgtgatattgtcaaacagatgattaaaaagggactttttcctaccccaattgaaattaatctcttaattcagtctctttgccaagaggggaagatggatgaggctaaacatttcatggaggagtgtttaaacaaaggttgtgctgttaatgttgtcaattttactactgttattcatggttattgtcaaaaagatgacttggaagctgctctgtcattgcttgatgacatgtatctcagcaacaaacacgcagatgcagtaacttatacagcagtgatcaatgcattgggaaagaagggtagaatacaagaggcaacagaacttatgatgaagatgctgggtaagggtattgacccaactcccgtcacatacaggacgatcatccactggtattgtaagatgaatagggtggatgatttgttaaaattattggagaagatgttcttgaggcaacgttgcaaaacaacatataatcaagtgattgagaagctttgtagttttgggaactttgaggctgctgataaactattgggtaaggtgttgagaacagcttcaagagttgatgctaaaacatgccatgttgttatggatggttatttgagaaaagaggttcctctattagcatacaaagtggcttgtcgaatgttcaatcggaatctgattcctgatttaaagttgtgtcagaaggtgaccaagagattgatgctagaaggatactccaaagaggcagacaaccttatgctacggtttgttgagcgtggatgcatatcaaaccaacttcaggaacatctggaaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

595

Amino Acids

67.75

Weight (kDa)

8.98

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	255 - 287	2.1e-06	PPR repeat family
PPR_1	PF12854	269 - 299	8.2e-08	PPR repeat
PPR_2	PF13041	273 - 320	8.9e-09	PPR repeat family
TPR_24	PF23276	311 - 403	4.4e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	374 - 406	3e-08	PPR repeat
PPR_2	PF13041	379 - 425	2e-11	PPR repeat family
PPR_3	PF13812	401 - 462	1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	413 - 441	9.4e-06	PPR repeat
PPR_2	PF13041	414 - 458	3.3e-11	PPR repeat family
PPR	PF01535	416 - 446	7.1e-07	PPR repeat
PPR_1	PF12854	444 - 476	6.8e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30290 AT1G30290
fragaria_vesca	FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050 FvH4_3g05050
malus_domestica	MD10G1258300.v1.1
prunus_persica	Prupe.4G085500_v2.0.a1 Prupe.4G085500_v2.0.a1
pyrus_communis	pycom05g26000 pycom10g21460
rosa_chinensis	RchiOBHm_Chr3g0490541 RchiOBHm_Chr3g0490551 RchiOBHm_Chr5g0014911
rosa_laevigata	RLG00000022885 RLG00000032150
rosa_multiflora	Rmu_sc0003862.1_g000007 Rmu_sc0013610.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061660 Rroxscaffold_6G00393420
rosa_rugosa	Rorug03G0243900 Rorug05G0021400
rosa_samantha	Rh3AG293300 Rh3AG293400 Rh3BG329800 Rh3CG327300 Rh3CG327400 Rh3DG326700 Rh5AG117100 Rh5BG114100 Rh5CG125600 Rh5DG113500
rosa_wichuraiana	Rw3G025970 Rw5G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	960
AciI	CCGC	4 cut(s)	15, 37, 89, 727
AclI	AACGTT	1 cut(s)	1441
AclWI	GGATC	1 cut(s)	777
AcoI	YGGCCR	1 cut(s)	837
AcuI	CTGAAG	3 cut(s)	765, 773, 1751
AfaI	GTAC	2 cut(s)	22, 647
AfiI	CCNNNNNNNGG	3 cut(s)	247, 726, 1768
AflIII	ACRYGT	2 cut(s)	795, 1215
AgsI	TTSAA	9 cut(s)	104, 212, 392, 503, 535, 562, 1040, 1542, 1636
AloI	GAACNNNNNNTCC	2 cut(s)	1412, 1444
Alw26I	GTCTC	5 cut(s)	146, 184, 432, 570, 1065
AlwI	GGATC	1 cut(s)	777
Ama87I	CYCGRG	1 cut(s)	278
Aor13HI	TCCGGA	1 cut(s)	960
AoxI	GGCC	2 cut(s)	717, 837
ApeKI	GCWGC	4 cut(s)	92, 266, 1193, 1502
AseI	ATTAAT	1 cut(s)	1044
Asp700I	GAANNNNTTC	2 cut(s)	1427, 1537
AspS9I	GGNCC	2 cut(s)	489, 718
AsuC2I	CCSGG	2 cut(s)	279, 280
AsuHPI	GGTGA	3 cut(s)	460, 518, 1687
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	489
AxyI	CCTNAGG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	4 cut(s)	104, 278, 1180, 1489
BccI	CCATC	6 cut(s)	314, 410, 757, 938, 1075, 1571
BceAI	ACGGC	1 cut(s)	852
BciVI	GTATCC	1 cut(s)	1694
BclI	TGATCA	1 cut(s)	1263
BcnI	CCSGG	2 cut(s)	279, 280
BcoDI	GTCTC	5 cut(s)	146, 184, 432, 570, 1065
BfaI	CTAG	4 cut(s)	204, 696, 1694, 1786
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	1694
BisI	GCNGC	6 cut(s)	38, 90, 93, 267, 1194, 1503
BlsI	GCNGC	6 cut(s)	39, 91, 94, 268, 1195, 1504
Bme1390I	CCNGG	2 cut(s)	279, 280
Bme18I	GGWCC	1 cut(s)	489
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	489, 718
BmiI	GGNNCC	3 cut(s)	491, 959, 1599
BmrFI	CCNGG	2 cut(s)	279, 280
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	9 cut(s)	132, 253, 774, 939, 1231, 1311, 1540, 1680, 1739
BmuI	ACTGGG	1 cut(s)	613
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	405
BpuEI	CTTGAG	2 cut(s)	680, 1453
BpuMI	CCSGG	2 cut(s)	279, 280
BsaBI	GATNNNNATC	1 cut(s)	1753
BsaI	GGTCTC	2 cut(s)	146, 432
BsaJI	CCNNGG	3 cut(s)	156, 278, 688
BsaWI	WCCGGW	2 cut(s)	164, 960
BsaXI	ACNNNNNCTCC	2 cut(s)	1412, 1442
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 726, 1768
Bse1I	ACTGG	2 cut(s)	608, 1379
Bse21I	CCTNAGG	1 cut(s)	29
Bse3DI	GCAATG	2 cut(s)	660, 1202
Bse8I	GATNNNNATC	1 cut(s)	1753
BseAI	TCCGGA	1 cut(s)	960
BseDI	CCNNGG	3 cut(s)	156, 278, 688
BseGI	GGATG	7 cut(s)	11, 147, 1090, 1368, 1405, 1582, 1754
BseJI	GATNNNNATC	1 cut(s)	1753
BseLI	CCNNNNNNNGG	3 cut(s)	247, 726, 1768
BseMI	GCAATG	2 cut(s)	660, 1202
BseMII	CTCAG	3 cut(s)	43, 581, 1237
BseNI	ACTGG	2 cut(s)	608, 1379
BseRI	GAGGAG	1 cut(s)	1121
BseXI	GCAGC	4 cut(s)	104, 278, 1180, 1489
BseYI	CCCAGC	3 cut(s)	240, 295, 1324
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	719, 839
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	3 cut(s)	165, 279, 961
BslFI	GGGAC	1 cut(s)	1032
BslI	CCNNNNNNNGG	3 cut(s)	247, 726, 1768
BsmAI	GTCTC	5 cut(s)	146, 184, 432, 570, 1065
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	1032
BsnI	GGCC	2 cut(s)	719, 839
Bso31I	GGTCTC	2 cut(s)	146, 432
BsoBI	CYCGRG	1 cut(s)	278
Bsp13I	TCCGGA	1 cut(s)	960
Bsp143I	GATC	3 cut(s)	769, 1263, 1365
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	4 cut(s)	15, 37, 89, 727
BspANI	GGCC	2 cut(s)	719, 839
BspCNI	CTCAG	3 cut(s)	42, 580, 1236
BspEI	TCCGGA	1 cut(s)	960
BspLI	GGNNCC	3 cut(s)	491, 959, 1599
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	1 cut(s)	777
BspTNI	GGTCTC	2 cut(s)	146, 432
BsrDI	GCAATG	2 cut(s)	660, 1202
BsrI	ACTGG	2 cut(s)	608, 1379
BssECI	CCNNGG	3 cut(s)	156, 278, 688
BssMI	GATC	3 cut(s)	769, 1263, 1365
BssNAI	GTATAC	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	156, 688
Bst1107I	GTATAC	1 cut(s)	57
Bst4CI	ACNGT	6 cut(s)	25, 233, 826, 941, 1156, 1734
BstC8I	GCNNGC	1 cut(s)	815
BstDEI	CTNAG	6 cut(s)	29, 476, 567, 668, 707, 1223
BstDSI	CCRYGG	1 cut(s)	156
BstEII	GGTNACC	1 cut(s)	1675
BstF5I	GGATG	7 cut(s)	11, 147, 1090, 1368, 1405, 1582, 1754
BstKTI	GATC	3 cut(s)	772, 1266, 1368
BstMAI	GTCTC	5 cut(s)	146, 184, 432, 570, 1065
BstMBI	GATC	3 cut(s)	769, 1263, 1365
BstMWI	GCNNNNNNNGC	2 cut(s)	664, 733
BstNSI	RCATGY	3 cut(s)	799, 1219, 1563
BstPI	GGTNACC	1 cut(s)	1675
BstSCI	CCNGG	2 cut(s)	277, 278
BstV1I	GCAGC	4 cut(s)	104, 278, 1180, 1489
BstV2I	GAAGAC	1 cut(s)	111
BstZ17I	GTATAC	1 cut(s)	57
Bsu36I	CCTNAGG	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	1694
BsuRI	GGCC	2 cut(s)	719, 839
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	7 cut(s)	11, 147, 1090, 1368, 1405, 1582, 1754
BtsI	GCAGTG	2 cut(s)	623, 1266
BtsIMutI	CAGTG	4 cut(s)	623, 946, 1266, 1372
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	1 cut(s)	815
Cfr13I	GGNCC	2 cut(s)	489, 718
Cfr9I	CCCGGG	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	21, 646
CspCI	CAANNNNNGTGG	2 cut(s)	1361, 1396
CviQI	GTAC	2 cut(s)	21, 646
DdeI	CTNAG	6 cut(s)	29, 476, 567, 668, 707, 1223
DpnI	GATC	3 cut(s)	771, 1265, 1367
DpnII	GATC	3 cut(s)	769, 1263, 1365
DraI	TTTAAA	2 cut(s)	1116, 1659
EaeI	YGGCCR	1 cut(s)	837
EciI	GGCGGA	2 cut(s)	4, 742
Eco130I	CCWWGG	2 cut(s)	156, 688
Eco31I	GGTCTC	2 cut(s)	146, 432
Eco47I	GGWCC	1 cut(s)	489
Eco57I	CTGAAG	3 cut(s)	765, 773, 1751
Eco81I	CCTNAGG	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	278
Eco91I	GGTNACC	1 cut(s)	1675
EcoO65I	GGTNACC	1 cut(s)	1675
EcoT14I	CCWWGG	2 cut(s)	156, 688
EcoT22I	ATGCAT	3 cut(s)	954, 1273, 1754
ErhI	CCWWGG	2 cut(s)	156, 688
Esp3I	CGTCTC	1 cut(s)	184
FalI	AAGNNNNNCTT	4 cut(s)	571, 603, 1415, 1447
FaqI	GGGAC	1 cut(s)	1032
FbaI	TGATCA	1 cut(s)	1263
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	6 cut(s)	38, 90, 93, 267, 1194, 1503
FokI	GGATG	6 cut(s)	154, 1097, 1355, 1412, 1589, 1761
Fsp4HI	GCNGC	6 cut(s)	38, 90, 93, 267, 1194, 1503
FspBI	CTAG	4 cut(s)	204, 696, 1694, 1786
GluI	GCNGC	6 cut(s)	38, 90, 93, 267, 1194, 1503
GsaI	CCCAGC	3 cut(s)	244, 299, 1328
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	719, 839
HapII	CCGG	3 cut(s)	165, 279, 961
HindIII	AAGCTT	3 cut(s)	529, 747, 1475
HinfI	GANTC	3 cut(s)	703, 1642, 1648
HpaII	CCGG	3 cut(s)	165, 279, 961
HphI	GGTGA	3 cut(s)	460, 518, 1687
Hpy166II	GTNNAC	4 cut(s)	57, 229, 646, 918
Hpy188I	TCNGA	5 cut(s)	745, 948, 1641, 1647, 1671
Hpy188III	TCNNGA	7 cut(s)	31, 961, 1432, 1542, 1652, 1769, 1778
Hpy8I	GTNNAC	4 cut(s)	57, 229, 646, 918
HpyAV	CCTTC	5 cut(s)	497, 962, 1276, 1666, 1691
HpyCH4III	ACNGT	6 cut(s)	25, 233, 826, 941, 1156, 1734
HpyCH4IV	ACGT	3 cut(s)	59, 177, 1441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	664, 733
HpyF3I	CTNAG	6 cut(s)	29, 476, 567, 668, 707, 1223
HpySE526I	ACGT	3 cut(s)	59, 177, 1441
Kpn2I	TCCGGA	1 cut(s)	960
Ksp22I	TGATCA	1 cut(s)	1263
Kzo9I	GATC	3 cut(s)	769, 1263, 1365
Lsp1109I	GCAGC	4 cut(s)	104, 278, 1180, 1489
LweI	GCATC	9 cut(s)	132, 253, 774, 939, 1231, 1311, 1540, 1680, 1739
MaeI	CTAG	4 cut(s)	204, 696, 1694, 1786
MaeII	ACGT	3 cut(s)	59, 177, 1441
MaeIII	GTNAC	6 cut(s)	7, 184, 522, 1246, 1351, 1675
MalI	GATC	3 cut(s)	771, 1265, 1367
MboI	GATC	3 cut(s)	769, 1263, 1365
MboII	GAAGA	7 cut(s)	116, 404, 437, 920, 1090, 1330, 1435
MfeI	CAATTG	2 cut(s)	639, 1035
Mph1103I	ATGCAT	3 cut(s)	954, 1273, 1754
MroI	TCCGGA	1 cut(s)	960
MroXI	GAANNNNTTC	2 cut(s)	1427, 1537
MslI	CAYNNNNRTG	1 cut(s)	1239
MspI	CCGG	3 cut(s)	165, 279, 961
MspR9I	CCNGG	2 cut(s)	279, 280
MssI	GTTTAAAC	1 cut(s)	1116
MunI	CAATTG	2 cut(s)	639, 1035
MwoI	GCNNNNNNNGC	2 cut(s)	664, 733
NciI	CCSGG	2 cut(s)	279, 280
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	769, 1263, 1365
NlaIV	GGNNCC	3 cut(s)	491, 959, 1599
NmuCI	GTSAC	2 cut(s)	1351, 1675
NsiI	ATGCAT	3 cut(s)	954, 1273, 1754
NspI	RCATGY	3 cut(s)	799, 1219, 1563
PciI	ACATGT	2 cut(s)	795, 1215
PdmI	GAANNNNTTC	2 cut(s)	1427, 1537
PfeI	GAWTC	3 cut(s)	703, 1642, 1648
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	6 cut(s)	39, 91, 94, 268, 1195, 1504
PmeI	GTTTAAAC	1 cut(s)	1116
PscI	ACATGT	2 cut(s)	795, 1215
PshBI	ATTAAT	1 cut(s)	1044
Psp1406I	AACGTT	1 cut(s)	1441
PspEI	GGTNACC	1 cut(s)	1675
PspFI	CCCAGC	3 cut(s)	240, 295, 1324
PspN4I	GGNNCC	3 cut(s)	491, 959, 1599
PspPI	GGNCC	2 cut(s)	489, 718
RsaI	GTAC	2 cut(s)	22, 647
RsaNI	GTAC	2 cut(s)	21, 646
RseI	CAYNNNNRTG	1 cut(s)	1239
SatI	GCNGC	6 cut(s)	38, 90, 93, 267, 1194, 1503
Sau3AI	GATC	3 cut(s)	769, 1263, 1365
Sau96I	GGNCC	2 cut(s)	489, 718
ScrFI	CCNGG	2 cut(s)	279, 280
SfaNI	GCATC	9 cut(s)	132, 253, 774, 939, 1231, 1311, 1540, 1680, 1739
SinI	GGWCC	1 cut(s)	489
SmaI	CCCGGG	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	1239
SmlI	CTYRAG	2 cut(s)	659, 1432
SmoI	CTYRAG	2 cut(s)	659, 1432
SsiI	CCGC	4 cut(s)	15, 37, 89, 727
SspI	AATATT	2 cut(s)	340, 407
SspMI	CTAG	4 cut(s)	204, 696, 1694, 1786
StyD4I	CCNGG	2 cut(s)	277, 278
StyI	CCWWGG	2 cut(s)	156, 688
TaaI	ACNGT	6 cut(s)	25, 233, 826, 941, 1156, 1734
TaiI	ACGT	3 cut(s)	62, 180, 1444
TaqI	TCGA	1 cut(s)	1627
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	2 cut(s)	40, 92
TfiI	GAWTC	3 cut(s)	703, 1642, 1648
TscAI	CASTG	4 cut(s)	623, 946, 1266, 1379
TseFI	GTSAC	2 cut(s)	1351, 1675
TseI	GCWGC	4 cut(s)	92, 266, 1193, 1502
Tsp45I	GTSAC	2 cut(s)	1351, 1675
TspDTI	ATGAA	8 cut(s)	438, 444, 591, 908, 1090, 1151, 1331, 1403
TspMI	CCCGGG	1 cut(s)	278
TspRI	CASTG	4 cut(s)	623, 946, 1266, 1379
Van91I	CCANNNNNTGG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	489
VspI	ATTAAT	1 cut(s)	1044
XceI	RCATGY	3 cut(s)	799, 1219, 1563
XmaI	CCCGGG	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	56
XmnI	GAANNNNTTC	2 cut(s)	1427, 1537
XspI	CTAG	4 cut(s)	204, 696, 1694, 1786
Zsp2I	ATGCAT	3 cut(s)	954, 1273, 1754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.