Rmu_sc0004015.1_g000017

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004015.1
OG0005227
Physical Location & Seq
Reverse (-)
52910 .. 53629
720 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
atggacaccggagcggcgggcgtgggtctcgccgcgtcgtcgtcgtcggcggaggacccgtcgtctcggggatcgccgctcgacgccgtccaggcgtggagcttcggcgtgtcgcgccgataccagcacctgctcgacaaaacgacgccgcacgtcctccaccgctggctcgcaaccctcggcgtggccttggtctacgtcctccgcgtctacttcgtccagggattctacgtcgtgtcgtacggcttggggatctacctcctcaacttgctcatcggctttctctctcctcaggtcgacccggagatccacgacctttccgacggccccggcctccccacccgcggatccgacgagttccgccccttcgttcgacgcctccccgagtttaaattctggtactcaattacaaaggcgttttgcattgctttcgtgatgacattcttcagtgcatttgatgtgcctgtgttctggcccattcttctatgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

163

Amino Acids

18.16

Weight (kDa)

6.39

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 37 - 163 1e-58 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 138
Acc36I ACCTGC 1 cut(s) 138
AccBSI CCGCTC 2 cut(s) 14, 79
AccI GTMKAC 3 cut(s) 195, 210, 297
AccII CGCG 4 cut(s) 35, 115, 207, 345
AclWI GGATC 5 cut(s) 79, 260, 301, 342, 355
AcsI RAATTY 1 cut(s) 392
AcuI CTGAAG 1 cut(s) 430
AcyI GRCGYC 3 cut(s) 84, 146, 376
AfaI GTAC 2 cut(s) 242, 401
AfiI CCNNNNNNNGG 2 cut(s) 184, 344
AhdI GACNNNNNGTC 1 cut(s) 61
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 2 cut(s) 90, 219
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 32, 69
AlwI GGATC 5 cut(s) 79, 260, 301, 342, 355
AlwNI CAGNNNCTG 1 cut(s) 130
Ama87I CYCGRG 2 cut(s) 66, 383
AoxI GGCC 4 cut(s) 186, 325, 331, 473
ApoI RAATTY 1 cut(s) 392
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 3 cut(s) 55, 326, 474
AsuC2I CCSGG 2 cut(s) 302, 330
AvaI CYCGRG 2 cut(s) 66, 383
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 291
BamHI GGATCC 1 cut(s) 347
BceAI ACGGC 3 cut(s) 71, 259, 340
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BciT130I CCWGG 2 cut(s) 92, 221
BcnI CCSGG 2 cut(s) 302, 330
BcoDI GTCTC 2 cut(s) 32, 69
BfuAI ACCTGC 1 cut(s) 138
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 4 cut(s) 15, 33, 77, 149
BlsI GCNGC 4 cut(s) 16, 34, 78, 150
Bme1390I CCNGG 4 cut(s) 92, 221, 302, 330
Bme18I GGWCC 1 cut(s) 55
BmeRI GACNNNNNGTC 1 cut(s) 61
BmeT110I CYCGRG 2 cut(s) 66, 383
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 3 cut(s) 55, 326, 474
BmiI GGNNCC 3 cut(s) 57, 328, 349
BmrFI CCNGG 4 cut(s) 92, 221, 302, 330
BpuMI CCSGG 2 cut(s) 302, 330
BsaHI GRCGYC 3 cut(s) 84, 146, 376
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 5 cut(s) 178, 189, 220, 328, 343
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 344
Bse21I CCTNAGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 2 cut(s) 92, 221
BseDI CCNNGG 5 cut(s) 178, 189, 220, 328, 343
BseLI CCNNNNNNNGG 2 cut(s) 184, 344
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 305
BseRI GAGGAG 2 cut(s) 251, 279
Bsh1236I CGCG 4 cut(s) 35, 115, 207, 345
BshFI GGCC 4 cut(s) 188, 327, 333, 475
BsiHKCI CYCGRG 2 cut(s) 66, 383
BsiSI CCGG 3 cut(s) 9, 302, 330
BsiWI CGTACG 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 184, 344
BsmAI GTCTC 2 cut(s) 32, 69
BsmBI CGTCTC 1 cut(s) 69
BsnI GGCC 4 cut(s) 188, 327, 333, 475
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 2 cut(s) 66, 383
Bsp143I GATC 4 cut(s) 71, 252, 306, 347
BspANI GGCC 4 cut(s) 188, 327, 333, 475
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 4 cut(s) 35, 115, 207, 345
BspLI GGNNCC 3 cut(s) 57, 328, 349
BspMI ACCTGC 1 cut(s) 138
BspPI GGATC 5 cut(s) 79, 260, 301, 342, 355
BspTNI GGTCTC 1 cut(s) 32
BsrBI CCGCTC 2 cut(s) 14, 79
BsrDI GCAATG 1 cut(s) 423
BssECI CCNNGG 5 cut(s) 178, 189, 220, 328, 343
BssMI GATC 4 cut(s) 71, 252, 306, 347
BssNI GRCGYC 3 cut(s) 84, 146, 376
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 2 cut(s) 92, 221
BstACI GRCGYC 3 cut(s) 84, 146, 376
BstC8I GCNNGC 3 cut(s) 19, 167, 171
BstDEI CTNAG 1 cut(s) 291
BstDSI CCRYGG 1 cut(s) 343
BstFNI CGCG 4 cut(s) 35, 115, 207, 345
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 4 cut(s) 74, 255, 309, 350
BstMAI GTCTC 2 cut(s) 32, 69
BstMBI GATC 4 cut(s) 71, 252, 306, 347
BstMWI GCNNNNNNNGC 2 cut(s) 92, 114
BstNI CCWGG 2 cut(s) 92, 221
BstSCI CCNGG 4 cut(s) 90, 219, 300, 328
BstUI CGCG 4 cut(s) 35, 115, 207, 345
BstX2I RGATCY 3 cut(s) 252, 306, 347
BstYI RGATCY 3 cut(s) 252, 306, 347
Bsu36I CCTNAGG 1 cut(s) 291
BsuRI GGCC 4 cut(s) 188, 327, 333, 475
BtgI CCRYGG 1 cut(s) 343
BtrI CACGTC 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 454
BveI ACCTGC 1 cut(s) 138
Cac8I GCNNGC 3 cut(s) 19, 167, 171
CaiI CAGNNNCTG 1 cut(s) 130
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 3 cut(s) 55, 326, 474
Cfr42I CCGCGG 1 cut(s) 346
CseI GACGC 5 cut(s) 24, 92, 154, 196, 384
Csp6I GTAC 2 cut(s) 241, 400
CviJI RGCY 8 cut(s) 102, 169, 188, 246, 279, 327, 333, 475
CviKI_1 RGCY 8 cut(s) 102, 169, 188, 246, 279, 327, 333, 475
CviQI GTAC 2 cut(s) 241, 400
DdeI CTNAG 1 cut(s) 291
DpnI GATC 4 cut(s) 73, 254, 308, 349
DpnII GATC 4 cut(s) 71, 252, 306, 347
DraI TTTAAA 1 cut(s) 391
DriI GACNNNNNGTC 1 cut(s) 61
Eam1105I GACNNNNNGTC 1 cut(s) 61
EciI GGCGGA 2 cut(s) 65, 350
Eco130I CCWWGG 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 430
Eco81I CCTNAGG 1 cut(s) 291
Eco88I CYCGRG 2 cut(s) 66, 383
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 90, 219
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 69
FaiI YATR 1 cut(s) 487
FauI CCCGC 2 cut(s) 10, 350
FblI GTMKAC 3 cut(s) 195, 210, 297
Fnu4HI GCNGC 4 cut(s) 15, 33, 77, 149
Fsp4HI GCNGC 4 cut(s) 15, 33, 77, 149
GlaI GCGC 1 cut(s) 116
GluI GCNGC 4 cut(s) 15, 33, 77, 149
HaeIII GGCC 4 cut(s) 188, 327, 333, 475
HapII CCGG 3 cut(s) 9, 302, 330
HgaI GACGC 5 cut(s) 24, 92, 154, 196, 384
HhaI GCGC 1 cut(s) 117
Hin1I GRCGYC 3 cut(s) 84, 146, 376
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 1 cut(s) 225
HpaII CCGG 3 cut(s) 9, 302, 330
Hpy166II GTNNAC 3 cut(s) 196, 211, 298
Hpy188I TCNGA 2 cut(s) 322, 352
Hpy188III TCNNGA 1 cut(s) 433
Hpy8I GTNNAC 3 cut(s) 196, 211, 298
HpyAV CCTTC 1 cut(s) 376
HpyCH4IV ACGT 3 cut(s) 153, 198, 231
HpyCH4V TGCA 2 cut(s) 423, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 114
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 3 cut(s) 153, 198, 231
Hsp92I GRCGYC 3 cut(s) 84, 146, 376
HspAI GCGC 1 cut(s) 115
KspI CCGCGG 1 cut(s) 346
Kzo9I GATC 4 cut(s) 71, 252, 306, 347
LmnI GCTCC 2 cut(s) 11, 99
MaeII ACGT 3 cut(s) 153, 198, 231
MalI GATC 4 cut(s) 73, 254, 308, 349
MbiI CCGCTC 2 cut(s) 14, 79
MboI GATC 4 cut(s) 71, 252, 306, 347
MboII GAAGA 2 cut(s) 436, 473
MflI RGATCY 3 cut(s) 252, 306, 347
MluCI AATT 2 cut(s) 392, 405
MmeI TCCRAC 2 cut(s) 345, 375
MnlI CCTC 9 cut(s) 46, 167, 188, 212, 269, 272, 300, 344, 389
MseI TTAA 1 cut(s) 390
MspA1I CMGCKG 2 cut(s) 165, 345
MspI CCGG 3 cut(s) 9, 302, 330
MspR9I CCNGG 4 cut(s) 92, 221, 302, 330
MvaI CCWGG 2 cut(s) 92, 221
MvnI CGCG 4 cut(s) 35, 115, 207, 345
MwoI GCNNNNNNNGC 2 cut(s) 92, 114
NciI CCSGG 2 cut(s) 302, 330
NdeII GATC 4 cut(s) 71, 252, 306, 347
NlaIV GGNNCC 3 cut(s) 57, 328, 349
NmeAIII GCCGAG 1 cut(s) 159
PaqCI CACCTGC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 318
PfeI GAWTC 1 cut(s) 225
Pfl23II CGTACG 1 cut(s) 240
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 4 cut(s) 16, 34, 78, 150
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 90, 219
PspGI CCWGG 2 cut(s) 90, 219
PspLI CGTACG 1 cut(s) 240
PspN4I GGNNCC 3 cut(s) 57, 328, 349
PspPI GGNCC 3 cut(s) 55, 326, 474
PspPPI RGGWCCY 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 130
PsuI RGATCY 3 cut(s) 252, 306, 347
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 2 cut(s) 242, 401
RsaNI GTAC 2 cut(s) 241, 400
SacII CCGCGG 1 cut(s) 346
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 4 cut(s) 15, 33, 77, 149
Sau3AI GATC 4 cut(s) 71, 252, 306, 347
Sau96I GGNCC 3 cut(s) 55, 326, 474
ScrFI CCNGG 4 cut(s) 92, 221, 302, 330
SetI ASST 8 cut(s) 104, 132, 156, 201, 234, 261, 297, 318
Sfr303I CCGCGG 1 cut(s) 346
SgrBI CCGCGG 1 cut(s) 346
SinI GGWCC 1 cut(s) 55
Sse9I AATT 2 cut(s) 392, 405
StyD4I CCNGG 4 cut(s) 90, 219, 300, 328
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 3 cut(s) 156, 201, 234
TaqI TCGA 4 cut(s) 81, 135, 297, 373
TasI AATT 2 cut(s) 392, 405
TauI GCSGC 4 cut(s) 17, 35, 79, 151
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 454
TspRI CASTG 1 cut(s) 454
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 392
XmiI GTMKAC 3 cut(s) 195, 210, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.