Rmu_sc0004084.1_g000013

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004084.1
OG0007537
Physical Location & Seq
Reverse (-)
60562 .. 61984
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
atgaagatggagctggataaacttagcaacttaccttctgagattatagaccaaatcttatacaaaatgcctattaaggaggctgtgagaacatgtgttttatcaaatgagtggagatataaatgggctatgctgtcacattttgtgtttgatgaacagtgtgacacaactctagaccactccacctttgtcgacattgttgatcgcatgctcttacttaacattggccccatgcacaagttcaagctttcccatcacaaacgtgtagccacaagtgtttttaaggatgttattcttaaaaatacctcaaatcttgttgatgttactatttgtttgaactacaatgaccagggacgctttcttagcagctctagcaatttgctcaagttttttgcttacctgcctcaaattcaaaggctcatattggagaactacttcctaaagtatttggctgttggtaacttgcgaacaaagctgccaataccatgcctgtatctgaagtttctttctatacacatttgtttggttaatctggagcagtttttaacagttctatgccttatgaaaagctcccctgcactgcaagaactcatactcgtgtccatccgagatgatgatgctgttgcaggagaaatgaactcttggttagatgacaaccggagttgtcaattctcccaactgcagctagttaaaatatttggcctcaggggtgtcattgctgaactagagtttatcagatttgtgctcttaaggtcacccatacttaagtcaatgactgtaaaacctcattctgacgatggttcttcggaactatttaaaaagtggcttcggtttaagcgtgtctccgtggatgcagagataatctacttggatccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

292

Amino Acids

33.87

Weight (kDa)

8.39

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 46 3.8e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 408
AccI GTMKAC 1 cut(s) 192
AclWI GGATC 1 cut(s) 866
AcsI RAATTY 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 518
AflII CTTAAG 2 cut(s) 748, 764
AflIII ACRYGT 2 cut(s) 92, 262
AgsI TTSAA 3 cut(s) 244, 337, 413
AjnI CCWGG 1 cut(s) 348
AleI CACNNNNGTG 1 cut(s) 261
AluBI AGCT 6 cut(s) 13, 247, 369, 475, 570, 685
AluI AGCT 6 cut(s) 13, 247, 369, 475, 570, 685
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 1 cut(s) 847
AlwI GGATC 1 cut(s) 866
AoxI GGCC 2 cut(s) 226, 700
ApeKI GCWGC 3 cut(s) 366, 475, 682
ApoI RAATTY 1 cut(s) 408
Asp700I GAANNNNTTC 1 cut(s) 434
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 747
AxyI CCTNAGG 1 cut(s) 704
BamHI GGATCC 1 cut(s) 871
BauI CACGAG 1 cut(s) 596
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 3 cut(s) 378, 462, 694
BccI CCATC 3 cut(s) 261, 611, 791
BciT130I CCWGG 1 cut(s) 350
BcoDI GTCTC 1 cut(s) 847
BfaI CTAG 4 cut(s) 173, 372, 686, 725
BfmI CTRYAG 1 cut(s) 680
BfrI CTTAAG 2 cut(s) 748, 764
BfuAI ACCTGC 1 cut(s) 408
BisI GCNGC 3 cut(s) 367, 476, 683
BlsI GCNGC 3 cut(s) 368, 477, 684
Bme1390I CCNGG 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 2 cut(s) 229, 873
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 2 cut(s) 607, 841
BpmI CTGGAG 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 349, 846
BsaWI WCCGGW 1 cut(s) 657
Bse21I CCTNAGG 1 cut(s) 704
Bse3DI GCAATG 1 cut(s) 714
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 349, 846
BseGI GGATG 3 cut(s) 292, 603, 856
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 2 cut(s) 30, 718
BseXI GCAGC 3 cut(s) 378, 462, 694
BsgI GTGCAG 1 cut(s) 561
BshFI GGCC 2 cut(s) 228, 702
BsiHKAI GWGCWC 1 cut(s) 747
BsiSI CCGG 1 cut(s) 658
BslFI GGGAC 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 847
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 2 cut(s) 228, 702
Bsp1286I GDGCHC 1 cut(s) 747
Bsp143I GATC 2 cut(s) 202, 871
BspANI GGCC 2 cut(s) 228, 702
BspCNI CTCAG 2 cut(s) 31, 717
BspLI GGNNCC 2 cut(s) 229, 873
BspMAI CTGCAG 1 cut(s) 684
BspMI ACCTGC 1 cut(s) 408
BspPI GGATC 1 cut(s) 866
BspTI CTTAAG 2 cut(s) 748, 764
BsrDI GCAATG 1 cut(s) 714
BssECI CCNNGG 2 cut(s) 349, 846
BssMI GATC 2 cut(s) 202, 871
BssSI CACGAG 1 cut(s) 596
Bst2BI CACGAG 1 cut(s) 596
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 3 cut(s) 159, 550, 778
BstAFI CTTAAG 2 cut(s) 748, 764
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 4 cut(s) 23, 39, 362, 704
BstDSI CCRYGG 1 cut(s) 846
BstEII GGTNACC 1 cut(s) 753
BstF5I GGATG 3 cut(s) 292, 603, 856
BstKTI GATC 2 cut(s) 205, 874
BstMAI GTCTC 1 cut(s) 847
BstMBI GATC 2 cut(s) 202, 871
BstMWI GCNNNNNNNGC 3 cut(s) 363, 372, 472
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 2 cut(s) 96, 211
BstPI GGTNACC 1 cut(s) 753
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 680
BstV1I GCAGC 3 cut(s) 378, 462, 694
BstX2I RGATCY 1 cut(s) 871
BstYI RGATCY 1 cut(s) 871
Bsu36I CCTNAGG 1 cut(s) 704
BsuRI GGCC 2 cut(s) 228, 702
BtgI CCRYGG 1 cut(s) 846
BtsCI GGATG 3 cut(s) 292, 603, 856
BtsI GCAGTG 1 cut(s) 578
BtsIMutI CAGTG 2 cut(s) 164, 578
BveI ACCTGC 1 cut(s) 408
Cac8I GCNNGC 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 227
CseI GACGC 1 cut(s) 363
CviAII CATG 5 cut(s) 93, 208, 232, 486, 876
DdeI CTNAG 4 cut(s) 23, 39, 362, 704
DpnI GATC 2 cut(s) 204, 873
DpnII GATC 2 cut(s) 202, 871
DraI TTTAAA 1 cut(s) 817
Eco57I CTGAAG 1 cut(s) 518
Eco81I CCTNAGG 1 cut(s) 704
Eco91I GGTNACC 1 cut(s) 753
EcoO65I GGTNACC 1 cut(s) 753
EcoRII CCWGG 1 cut(s) 348
FaeI CATG 5 cut(s) 96, 211, 235, 489, 879
FaqI GGGAC 1 cut(s) 366
FatI CATG 5 cut(s) 92, 207, 231, 485, 875
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 367, 476, 683
FokI GGATG 3 cut(s) 299, 590, 863
Fsp4HI GCNGC 3 cut(s) 367, 476, 683
FspBI CTAG 4 cut(s) 173, 372, 686, 725
GluI GCNGC 3 cut(s) 367, 476, 683
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 2 cut(s) 228, 702
HapII CCGG 1 cut(s) 658
HgaI GACGC 1 cut(s) 363
Hin1II CATG 5 cut(s) 96, 211, 235, 489, 879
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 245
HpaII CCGG 1 cut(s) 658
HphI GGTGA 1 cut(s) 747
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 6 cut(s) 40, 498, 608, 737, 793, 808
Hpy188III TCNNGA 2 cut(s) 173, 533
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 3 cut(s) 159, 550, 778
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 6 cut(s) 235, 578, 583, 626, 682, 854
HpyF10VI GCNNNNNNNGC 3 cut(s) 363, 372, 472
HpyF3I CTNAG 4 cut(s) 23, 39, 362, 704
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 5 cut(s) 96, 211, 235, 489, 879
Kzo9I GATC 2 cut(s) 202, 871
LmnI GCTCC 3 cut(s) 10, 535, 575
LpnPI CCDG 9 cut(s) 335, 362, 413, 503, 518, 588, 612, 671, 691
Lsp1109I GCAGC 3 cut(s) 378, 462, 694
LweI GCATC 2 cut(s) 607, 841
MaeI CTAG 4 cut(s) 173, 372, 686, 725
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 5 cut(s) 135, 161, 322, 458, 753
MalI GATC 2 cut(s) 204, 873
MboI GATC 2 cut(s) 202, 871
MboII GAAGA 2 cut(s) 16, 795
MflI RGATCY 1 cut(s) 871
MhlI GDGCHC 1 cut(s) 747
MluCI AATT 3 cut(s) 376, 408, 668
MnlI CCTC 5 cut(s) 73, 316, 414, 713, 795
MroXI GAANNNNTTC 1 cut(s) 434
MslI CAYNNNNRTG 2 cut(s) 261, 596
MspCI CTTAAG 2 cut(s) 748, 764
MspI CCGG 1 cut(s) 658
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 3 cut(s) 363, 372, 472
NdeII GATC 2 cut(s) 202, 871
NlaIII CATG 5 cut(s) 96, 211, 235, 489, 879
NlaIV GGNNCC 2 cut(s) 229, 873
NmuCI GTSAC 3 cut(s) 135, 161, 753
NspI RCATGY 2 cut(s) 96, 211
OliI CACNNNNGTG 1 cut(s) 261
PaeI GCATGC 1 cut(s) 211
PciI ACATGT 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 835
PdmI GAANNNNTTC 1 cut(s) 434
PkrI GCNGC 3 cut(s) 368, 477, 684
PscI ACATGT 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 348
PspEI GGTNACC 1 cut(s) 753
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 229, 873
PspPI GGNCC 1 cut(s) 227
PstI CTGCAG 1 cut(s) 684
PsuI RGATCY 1 cut(s) 871
RseI CAYNNNNRTG 2 cut(s) 261, 596
SalI GTCGAC 1 cut(s) 191
SatI GCNGC 3 cut(s) 367, 476, 683
Sau3AI GATC 2 cut(s) 202, 871
Sau96I GGNCC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 747
SfaNI GCATC 2 cut(s) 607, 841
SfcI CTRYAG 1 cut(s) 680
SmiMI CAYNNNNRTG 2 cut(s) 261, 596
SmlI CTYRAG 3 cut(s) 383, 748, 764
SmoI CTYRAG 3 cut(s) 383, 748, 764
SphI GCATGC 1 cut(s) 211
Sse9I AATT 3 cut(s) 376, 408, 668
SspI AATATT 1 cut(s) 696
SspMI CTAG 4 cut(s) 173, 372, 686, 725
StyD4I CCNGG 1 cut(s) 348
TaaI ACNGT 3 cut(s) 159, 550, 778
TaiI ACGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 192
TasI AATT 3 cut(s) 376, 408, 668
TscAI CASTG 2 cut(s) 164, 585
TseFI GTSAC 3 cut(s) 135, 161, 753
TseI GCWGC 3 cut(s) 366, 475, 682
Tsp45I GTSAC 3 cut(s) 135, 161, 753
TspDTI ATGAA 4 cut(s) 17, 168, 578, 650
TspGWI ACGGA 1 cut(s) 835
TspRI CASTG 2 cut(s) 164, 585
Vha464I CTTAAG 2 cut(s) 748, 764
XapI RAATTY 1 cut(s) 408
XbaI TCTAGA 1 cut(s) 172
XceI RCATGY 2 cut(s) 96, 211
XmiI GTMKAC 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 434
XspI CTAG 4 cut(s) 173, 372, 686, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.