Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004825.1

Orthogroup ID

OG0002190

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1610

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

gtgacggaagatgactgtccagtaatttttcatgacaactttatcgtcagtgaggacaagggtcttttcattgagaagagagttacagaccttaagctaccagaatttctttcctatggaccccagaaagagcttggagaggtgaaaatgcttctgttcagaaaaatgaaagatggaacattttttgagtggaaggtggaaaaggatgcccccctatgcacattgcaagaggcgtttgagaaagtcaagcattcgctgggatttaatatggaattgaagtttgatgatcacatagtctacacagagagacagcttaagcatgttcttcaagtaatcttgcaggtggtaaatgagaatgcaaagggcagaccaatcttcttttcaacctttcagcctgatgcagctcttttgataagaaaaatgcagagcagataccctgtatattttctcactgaaggagggtctcaaatgtatgctgatgctagaaagaactctttggaagaagcagttaaggtgtgcttggcaggtggtttgcacggcattgtttcagaagtgagtgctatcttgggaaatccagaagctgtaaccaggattcaagggaaaaaactccacctgttaacttacggccaactaaataatattgtaaaggctgtgtacatgcaacttcagatgggtgtagacggagtgattgttgaccttgttcaagagatcacagaggcagtttgtgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006873 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016787 GO:0016788 GO:0019637 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042578 GO:0042592 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0046475 GO:0046486 GO:0046503 GO:0047389 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

243

Amino Acids

27.56

Weight (kDa)

5.6

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	1 - 234	9.6e-27	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43300 AT5G43300
fragaria_vesca	FvH4_4g23140 FvH4_4g23141
malus_domestica	MD13G1124800.v1.1 MD16G1125700.v1.1
prunus_persica	Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1 Prupe.1G220500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429471 RchiOBHm_Chr4g0429481 RchiOBHm_Chr6g0250451 RchiOBHm_Chr7g0224601
rosa_laevigata	RLG00000007067 RLG00000007068 RLG00000015446
rosa_multiflora	Rmu_co8337509.1_g000001 Rmu_sc0000660.1_g000025 Rmu_sc0003242.1_g000023 Rmu_sc0003708.1_g000009 Rmu_sc0004825.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255430 Rroxscaffold_5G00371170 Rroxscaffold_5G00371180
rosa_rugosa	Rorug03G0112400 Rorug03G0129700 Rorug03G0141900 Rorug04G0236300.1 Rorug04G0236400 Rorug07G0235100
rosa_samantha	Rh4AG291900 Rh4AG292000 Rh4BG297700 Rh4BG297800 Rh4CG313200 Rh4CG313300 Rh4DG294800 Rh4DG294900 Rh5AG390300 Rh5DG418100
rosa_wichuraiana	Rw4G025280 Rw4G025290 Rw5G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	331, 515
Acc36I	ACCTGC	2 cut(s)	331, 515
AccI	GTMKAC	2 cut(s)	297, 678
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	2 cut(s)	474, 650
AfaI	GTAC	1 cut(s)	656
AflII	CTTAAG	2 cut(s)	92, 314
AgsI	TTSAA	5 cut(s)	277, 329, 384, 596, 704
AjnI	CCWGG	1 cut(s)	587
AjuI	GAANNNNNNNTTGG	2 cut(s)	364, 396
AluBI	AGCT	5 cut(s)	97, 133, 313, 404, 581
AluI	AGCT	5 cut(s)	97, 133, 313, 404, 581
Alw26I	GTCTC	2 cut(s)	301, 468
AlwNI	CAGNNNCTG	1 cut(s)	581
AoxI	GGCC	1 cut(s)	625
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	2 cut(s)	167, 664
BceAI	ACGGC	2 cut(s)	553, 640
BciT130I	CCWGG	1 cut(s)	589
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	301, 468
BfaI	CTAG	1 cut(s)	483
BfrI	CTTAAG	2 cut(s)	92, 314
BfuAI	ACCTGC	2 cut(s)	331, 515
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	1 cut(s)	589
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	589
BmsI	GCATC	3 cut(s)	196, 388, 469
BoxI	GACNNNNGTC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	468
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bse1I	ACTGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	589
BseGI	GGATG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	413
BseYI	CCCAGC	1 cut(s)	256
BshFI	GGCC	1 cut(s)	627
BsmAI	GTCTC	2 cut(s)	301, 468
BsmI	GAATGC	2 cut(s)	250, 361
BsnI	GGCC	1 cut(s)	627
Bso31I	GGTCTC	1 cut(s)	468
Bsp1407I	TGTACA	1 cut(s)	654
Bsp143I	GATC	2 cut(s)	286, 708
BspANI	GGCC	1 cut(s)	627
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	121
BspMI	ACCTGC	2 cut(s)	331, 515
BspTI	CTTAAG	2 cut(s)	92, 314
BspTNI	GGTCTC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	221
BsrGI	TGTACA	1 cut(s)	654
BsrI	ACTGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	286, 708
Bst2UI	CCWGG	1 cut(s)	589
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	71
BstAFI	CTTAAG	2 cut(s)	92, 314
BstAUI	TGTACA	1 cut(s)	654
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	289, 711
BstMAI	GTCTC	2 cut(s)	301, 468
BstMBI	GATC	2 cut(s)	286, 708
BstNI	CCWGG	1 cut(s)	589
BstNSI	RCATGY	2 cut(s)	323, 661
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	587
BstV1I	GCAGC	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	627
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	55, 450
BveI	ACCTGC	2 cut(s)	331, 515
CaiI	CAGNNNCTG	1 cut(s)	581
CciI	TCATGA	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	655
CviAII	CATG	3 cut(s)	32, 320, 658
CviJI	RGCY	8 cut(s)	97, 133, 313, 394, 404, 581, 627, 650
CviKI_1	RGCY	8 cut(s)	97, 133, 313, 394, 404, 581, 627, 650
CviQI	GTAC	1 cut(s)	655
DpnI	GATC	2 cut(s)	288, 710
DpnII	GATC	2 cut(s)	286, 708
EaeI	YGGCCR	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	474, 650
EcoRII	CCWGG	1 cut(s)	587
FaeI	CATG	3 cut(s)	35, 323, 661
FaiI	YATR	9 cut(s)	33, 117, 217, 269, 293, 321, 442, 474, 659
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FatI	CATG	3 cut(s)	31, 319, 657
FbaI	TGATCA	1 cut(s)	286
FblI	GTMKAC	2 cut(s)	297, 678
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	1 cut(s)	402
GsaI	CCCAGC	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	627
Hin1II	CATG	3 cut(s)	35, 323, 661
HincII	GTYRAC	2 cut(s)	618, 694
HindII	GTYRAC	2 cut(s)	618, 694
HinfI	GANTC	1 cut(s)	592
HpaI	GTTAAC	1 cut(s)	618
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	5 cut(s)	298, 618, 655, 679, 694
Hpy188I	TCNGA	3 cut(s)	161, 550, 669
Hpy188III	TCNNGA	3 cut(s)	32, 575, 704
Hpy8I	GTNNAC	5 cut(s)	298, 618, 655, 679, 694
HpyAV	CCTTC	2 cut(s)	187, 449
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	8 cut(s)	219, 226, 340, 359, 401, 424, 535, 661
Hsp92II	CATG	3 cut(s)	35, 323, 661
Ksp22I	TGATCA	1 cut(s)	286
KspAI	GTTAAC	1 cut(s)	618
Kzo9I	GATC	2 cut(s)	286, 708
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	3 cut(s)	196, 388, 469
MaeI	CTAG	1 cut(s)	483
MaeIII	GTNAC	3 cut(s)	82, 583, 725
MalI	GATC	2 cut(s)	288, 710
MboI	GATC	2 cut(s)	286, 708
MboII	GAAGA	5 cut(s)	20, 88, 317, 367, 512
MluCI	AATT	3 cut(s)	24, 104, 272
MnlI	CCTC	5 cut(s)	46, 133, 223, 452, 709
MseI	TTAA	5 cut(s)	93, 264, 315, 510, 617
MspCI	CTTAAG	2 cut(s)	92, 314
MspR9I	CCNGG	1 cut(s)	589
Mva1269I	GAATGC	2 cut(s)	250, 361
MvaI	CCWGG	1 cut(s)	589
NdeII	GATC	2 cut(s)	286, 708
NlaIII	CATG	3 cut(s)	35, 323, 661
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	725
NspI	RCATGY	2 cut(s)	323, 661
PagI	TCATGA	1 cut(s)	31
PaqCI	CACCTGC	2 cut(s)	331, 515
PctI	GAATGC	2 cut(s)	250, 361
PfeI	GAWTC	1 cut(s)	592
PkrI	GCNGC	1 cut(s)	403
PshAI	GACNNNNGTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	587
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	581
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
SaqAI	TTAA	5 cut(s)	93, 264, 315, 510, 617
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	2 cut(s)	286, 708
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	589
SfaNI	GCATC	3 cut(s)	196, 388, 469
SinI	GGWCC	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	92, 314
SmoI	CTYRAG	2 cut(s)	92, 314
Sse9I	AATT	3 cut(s)	24, 104, 272
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	587
TaaI	ACNGT	1 cut(s)	17
TasI	AATT	3 cut(s)	24, 104, 272
TatI	WGTACW	1 cut(s)	654
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	5 cut(s)	93, 264, 315, 510, 617
Tru9I	TTAA	5 cut(s)	93, 264, 315, 510, 617
TscAI	CASTG	2 cut(s)	55, 457
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	3 cut(s)	20, 58, 182
TspGWI	ACGGA	2 cut(s)	20, 696
TspRI	CASTG	2 cut(s)	55, 457
Vha464I	CTTAAG	2 cut(s)	92, 314
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	2 cut(s)	323, 661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XmiI	GTMKAC	2 cut(s)	297, 678
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.