Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005017.1

Orthogroup ID

OG0008211

Physical Location & Seq

Genomic Coordinates Reverse (-)

26529 .. 28405

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgaataccttttcacatgtacccccgggctttagattccaccctacagatgaagaacttgttgattattatcttagaaagaagattgcttcaaagaagatcgaccttgatgtcatcagagatgttgatctttataagattgagccatgggatcttcaagggactgaagatcagaatgaatggtactttttcagccacaaagataaaaagtaccctacaggaactcgcacaaatagggcaacaaaagctgggttttggaaagcaactggaagagataaagctatttacattaggcacaatcttgttggcatgagaaagactctggtgttttacaaaggacgtgctccaaatggacagaagtcagattggatcatgcacgagtatcgacttgaaactaatgaaaatggccctcctcaggaagaaggatgggttgtgtgtagggttttcaagaaacgattggcaacagtaaggagaatgggtgattatgagtcaccatgttggtatgaccaaggctcctcattcatgcccgaacttgattctccaaggacaaatatgattcctcaccctgcttatacaacatcatcatcatcatcatatcatcaccagctttactccaactgcaaacaagaacttgatcatcatttgcagtacaatgctatgcctgtgcctcctcatcctgattcttttctacagctccctcaattagaaagccccaaggttgctcaatatggcacttatgatcatcataggaacaatggatgccatgtaatgccatcttcgacattcaggccagaggagcaattgcagcagatgaatcaacagaatctcatgatcaactcctcaccactactttataatgacaacagtcttgatgatcaactgacagattggcgagttctagacaaatttgttgcatcacagctcagccatgaccagcaagaagcttccaaggaaacaacaacaaattactcaaatgaagcagtatttgatcctgtgggtgatgaagtacatatgaatatgggagccaacgaatccaagaggccagaaaataatattggacaggactatgccgcctcaacatccacatcaagttgccaaattgatctgtggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

371

Amino Acids

43.12

Weight (kDa)

6.05

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 130	1.2e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12260 AT1G12260 AT1G62700 AT1G62700
fragaria_vesca	FvH4_5g00350 FvH4_5g00351
malus_domestica	MD00G1117000.v1.1 MD00G1146200.v1.1
prunus_persica	Prupe.5G076100_v2.0.a1 Prupe.5G076100_v2.0.a1
pyrus_communis	pycom04g07440 pycom06g05780
rosa_chinensis	RchiOBHm_Chr7g0202191 RchiOBHm_Chr7g0202201
rosa_laevigata	RLG00000003617
rosa_multiflora	Rmu_sc0005017.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254750
rosa_rugosa	Rorug07G0068900
rosa_samantha	Rh7AG196200 Rh7BG197500 Rh7CG207400 Rh7DG202900
rosa_wichuraiana	Rw7G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	135, 855
AasI	GACNNNNNNGTC	1 cut(s)	110
AciI	CCGC	1 cut(s)	1071
AclWI	GGATC	3 cut(s)	159, 377, 983
AcsI	RAATTY	1 cut(s)	905
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	5 cut(s)	21, 185, 212, 650, 1008
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	93, 158, 392, 448
AjiI	CACGTC	1 cut(s)	341
AjuI	GAANNNNNNNTTGG	2 cut(s)	1038, 1070
AluBI	AGCT	6 cut(s)	248, 281, 607, 694, 922, 944
AluI	AGCT	6 cut(s)	248, 281, 607, 694, 922, 944
Alw21I	GWGCWC	1 cut(s)	346
AlwI	GGATC	3 cut(s)	159, 377, 983
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	3 cut(s)	406, 788, 1040
ApeKI	GCWGC	1 cut(s)	805
ApoI	RAATTY	1 cut(s)	905
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	2 cut(s)	26, 27
AsuHPI	GGTGA	6 cut(s)	483, 491, 554, 593, 834, 1010
AvaI	CYCGRG	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	414
BauI	CACGAG	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	817
BccI	CCATC	2 cut(s)	420, 781
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BclI	TGATCA	4 cut(s)	634, 739, 831, 874
BcnI	CCSGG	2 cut(s)	26, 27
BfaI	CTAG	1 cut(s)	899
BfmI	CTRYAG	3 cut(s)	45, 216, 689
BisI	GCNGC	2 cut(s)	806, 1071
BlpI	GCTNAGC	1 cut(s)	923
BlsI	GCNGC	2 cut(s)	807, 1072
Bme1390I	CCNGG	2 cut(s)	26, 27
BmeT110I	CYCGRG	1 cut(s)	25
BmgBI	CACGTC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	514, 1024
BmrFI	CCNGG	2 cut(s)	26, 27
BmsI	GCATC	2 cut(s)	749, 923
BoxI	GACNNNNGTC	2 cut(s)	358, 864
BplI	GAGNNNNNCTC	2 cut(s)	304, 336
Bpu1102I	GCTNAGC	1 cut(s)	923
BpuMI	CCSGG	2 cut(s)	26, 27
BsaBI	GATNNNNATC	2 cut(s)	69, 126
BsaJI	CCNNGG	7 cut(s)	24, 25, 146, 508, 542, 714, 948
BsaXI	ACNNNNNCTCC	4 cut(s)	463, 493, 497, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	271
Bse21I	CCTNAGG	1 cut(s)	414
Bse8I	GATNNNNATC	2 cut(s)	69, 126
BseDI	CCNNGG	7 cut(s)	24, 25, 146, 508, 542, 714, 948
BseGI	GGATG	4 cut(s)	431, 673, 764, 1079
BseJI	GATNNNNATC	2 cut(s)	69, 126
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	428, 937
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	5 cut(s)	402, 505, 660, 809, 829
BseXI	GCAGC	1 cut(s)	817
BseYI	CCCAGC	1 cut(s)	248
BshFI	GGCC	3 cut(s)	408, 790, 1042
BsiHKAI	GWGCWC	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	3 cut(s)	408, 790, 1042
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp1720I	GCTNAGC	1 cut(s)	923
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	1 cut(s)	1071
BspANI	GGCC	3 cut(s)	408, 790, 1042
BspCNI	CTCAG	2 cut(s)	427, 936
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	2 cut(s)	514, 1024
BspPI	GGATC	3 cut(s)	159, 377, 983
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	7 cut(s)	24, 25, 146, 508, 542, 714, 948
BssSI	CACGAG	1 cut(s)	377
BssT1I	CCWWGG	5 cut(s)	146, 508, 542, 714, 948
Bst2BI	CACGAG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	466, 866
Bst6I	CTCTTC	1 cut(s)	265
BstDEI	CTNAG	3 cut(s)	74, 414, 923
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	4 cut(s)	431, 673, 764, 1079
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 796, 805
BstNSI	RCATGY	1 cut(s)	20
BstPAI	GACNNNNGTC	2 cut(s)	358, 864
BstSCI	CCNGG	2 cut(s)	24, 25
BstSFI	CTRYAG	3 cut(s)	45, 216, 689
BstV1I	GCAGC	1 cut(s)	817
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	414
BsuRI	GGCC	3 cut(s)	408, 790, 1042
BtgI	CCRYGG	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	341
BtsCI	GGATG	4 cut(s)	431, 673, 764, 1079
CciI	TCATGA	1 cut(s)	828
Cfr13I	GGNCC	1 cut(s)	407
Cfr9I	CCCGGG	1 cut(s)	25
Csp6I	GTAC	5 cut(s)	20, 184, 211, 649, 1007
CviAII	CATG	9 cut(s)	17, 147, 310, 373, 495, 523, 764, 829, 929
CviQI	GTAC	5 cut(s)	20, 184, 211, 649, 1007
DdeI	CTNAG	3 cut(s)	74, 414, 923
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco130I	CCWWGG	5 cut(s)	146, 508, 542, 714, 948
Eco57I	CTGAAG	1 cut(s)	186
Eco81I	CCTNAGG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	25
EcoT14I	CCWWGG	5 cut(s)	146, 508, 542, 714, 948
ErhI	CCWWGG	5 cut(s)	146, 508, 542, 714, 948
FaeI	CATG	9 cut(s)	20, 150, 313, 376, 498, 526, 767, 832, 932
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	9 cut(s)	16, 146, 309, 372, 494, 522, 763, 828, 928
FauNDI	CATATG	1 cut(s)	1011
FbaI	TGATCA	4 cut(s)	634, 739, 831, 874
Fnu4HI	GCNGC	2 cut(s)	806, 1071
FokI	GGATG	4 cut(s)	438, 660, 771, 1066
Fsp4HI	GCNGC	2 cut(s)	806, 1071
FspBI	CTAG	1 cut(s)	899
GluI	GCNGC	2 cut(s)	806, 1071
GsaI	CCCAGC	1 cut(s)	252
HaeIII	GGCC	3 cut(s)	408, 790, 1042
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	9 cut(s)	20, 150, 313, 376, 498, 526, 767, 832, 932
HindIII	AAGCTT	1 cut(s)	942
HinfI	GANTC	9 cut(s)	36, 319, 488, 536, 556, 680, 814, 823, 1031
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	6 cut(s)	483, 491, 554, 593, 834, 1010
Hpy188I	TCNGA	3 cut(s)	119, 174, 364
Hpy188III	TCNNGA	6 cut(s)	416, 448, 677, 829, 869, 899
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	2 cut(s)	466, 866
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	5 cut(s)	376, 621, 646, 805, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 796, 805
HpyF3I	CTNAG	3 cut(s)	74, 414, 923
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	9 cut(s)	20, 150, 313, 376, 498, 526, 767, 832, 932
Ksp22I	TGATCA	4 cut(s)	634, 739, 831, 874
LmnI	GCTCC	5 cut(s)	349, 518, 699, 796, 1022
Lsp1109I	GCAGC	1 cut(s)	817
LweI	GCATC	2 cut(s)	749, 923
MaeI	CTAG	1 cut(s)	899
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	489
MboII	GAAGA	8 cut(s)	65, 94, 109, 146, 179, 282, 431, 768
MfeI	CAATTG	1 cut(s)	800
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	5 cut(s)	701, 800, 905, 964, 1098
MlyI	GAGTC	2 cut(s)	313, 497
MmeI	TCCRAC	1 cut(s)	639
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	26, 27
MunI	CAATTG	1 cut(s)	800
MwoI	GCNNNNNNNGC	3 cut(s)	245, 796, 805
NciI	CCSGG	2 cut(s)	26, 27
NcoI	CCATGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	1011
NlaIII	CATG	9 cut(s)	20, 150, 313, 376, 498, 526, 767, 832, 932
NlaIV	GGNNCC	2 cut(s)	514, 1024
NmuCI	GTSAC	1 cut(s)	489
NspI	RCATGY	1 cut(s)	20
PagI	TCATGA	1 cut(s)	828
PciI	ACATGT	1 cut(s)	16
PfeI	GAWTC	7 cut(s)	36, 536, 556, 680, 814, 823, 1031
PkrI	GCNGC	2 cut(s)	807, 1072
PleI	GAGTC	2 cut(s)	313, 496
PpsI	GAGTC	2 cut(s)	313, 496
PscI	ACATGT	1 cut(s)	16
PshAI	GACNNNNGTC	2 cut(s)	358, 864
PsiI	TTATAA	2 cut(s)	135, 855
PspFI	CCCAGC	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	514, 1024
PspPI	GGNCC	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	5 cut(s)	21, 185, 212, 650, 1008
RsaNI	GTAC	5 cut(s)	20, 184, 211, 649, 1007
SatI	GCNGC	2 cut(s)	806, 1071
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	2 cut(s)	313, 497
ScrFI	CCNGG	2 cut(s)	26, 27
SduI	GDGCHC	1 cut(s)	346
SfaNI	GCATC	2 cut(s)	749, 923
SfcI	CTRYAG	3 cut(s)	45, 216, 689
SmaI	CCCGGG	1 cut(s)	27
Sse9I	AATT	5 cut(s)	701, 800, 905, 964, 1098
SsiI	CCGC	1 cut(s)	1071
SspI	AATATT	1 cut(s)	1054
SspMI	CTAG	1 cut(s)	899
StyD4I	CCNGG	2 cut(s)	24, 25
StyI	CCWWGG	5 cut(s)	146, 508, 542, 714, 948
TaaI	ACNGT	2 cut(s)	466, 866
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	3 cut(s)	102, 385, 779
TasI	AATT	5 cut(s)	701, 800, 905, 964, 1098
TatI	WGTACW	2 cut(s)	648, 1006
TauI	GCSGC	1 cut(s)	1073
TfiI	GAWTC	7 cut(s)	36, 536, 556, 680, 814, 823, 1031
TseFI	GTSAC	1 cut(s)	489
TseI	GCWGC	1 cut(s)	805
Tsp45I	GTSAC	1 cut(s)	489
TspDTI	ATGAA	9 cut(s)	17, 66, 192, 414, 511, 827, 990, 1017, 1028
TspMI	CCCGGG	1 cut(s)	25
XapI	RAATTY	1 cut(s)	905
XbaI	TCTAGA	1 cut(s)	898
XceI	RCATGY	1 cut(s)	20
XmaI	CCCGGG	1 cut(s)	25
XspI	CTAG	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.