Rmu_sc0005100.1_g000010

mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005100.1
OG0005851
Physical Location & Seq
Forward (+)
49597 .. 58464
8868 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3265 bp
atgttttatgtcaattcaagctccgtaaataatacccttaatcccaggccaagcaaaagttatccagaagcgaccacacttgtcgggattttgcaaaagatcagctctaagttccaaaaagcttttcgtgaaattttggagcggagagcttctgcacatccttttgaaaacgtgcaatctctgttaccaccaaattcatggttagggttacatccagttccagatcacaaacgtgatgcagccagagcagaggatgcactgaccctctcttatggtagtgagctaattggtatgcaaagggattggaatgaggagttgcaatcttgtagggaatttccacatacaactcctcaggaaagaattttgcgggatagggctctctacaaagtgacatcagacttcgtggatgcagcaatcagtggtgctgttggagttatcagcagatgcataccacctataaatccaactgatcccgagtgcttccacatgtatgttcacaataacatcttcttcagtttcgctgttgatgcggatcttgagcagctgtctaagaaccatatgtcagtttccaatttgaaaatggggagcacaggctctctaggcagttcttctgaaaagtctactggcagtttgttgcatagagagagtgaaatcaccaatggggaaaaatgtgatgcgtcatgcgcaggggaatgccatgatgccatggaatcagctgctgagacacaattgggtgagactgagcaggctacttacgcttctgcaaataatgatttgaaaggcaccaaggcataccaggaagctgatgtccctggactttataatcttgctatggccataattgattacagaggccatagagtagtagctcagagtgttttgccaggcattcttcaaggggataaatcagactctcttttatatggttctgttgataatgggaaaaagatatgctggaatgaggattttcattccaaggtggtggaggctgctaaacgccttcatttgaaagaacacacagtcctcgatggatctggaaatgttttcaaattagctgcaccagtcgaatgcaagggtattgttggtagtgatgacaggcattatcttcttgacttgatgagagtaactcctcgtgatgcaaacttcactggatctgggtctcgattttgtatcttgagaccagaactaattacttcctattgccaggtccttgatgcagagaaatcaaaatcgaagtctaaatgtgaaggagaggctcaggtcaccgctgatgggccaaacgataaccaggacatcgcacaaaaagagaagaccgttgatgcacaagaaattgtctcaccaccagctgaaagctctgaatcacatgaggaaactcttttcaaccctaatgtcttcactgagtttaagttggctggaaatgcggaggagatagcaacagatgaagaaaatgtgaggaaagccagtttgtatcttactgaggttgttcttccgaagttcatacaagatctttgcacacttgaagtatcacccatggatgggcagacactaactgaagcactccatgctcatggaattaatgttcgttatattggaaaagtggctgatgggaccaggcatttacctcatctttgggatctttgttctaatgagattgtggttagatcagccaagcacattcttaaggatgtcttaagagatacagaggatcatgatattgggcctgcaatctgccatttcttcaactgttttttcggaagctatcaagctgttggctcaaaagtcgctgctaatagttctcagtctagaacccccaaaaaagaacaagcaggtcatcaatctccgggaaaacggtcaaagggacaaggaagatggaaggctggagcttctacaaggaagagtgtatcttcatatatgcatgttagctcagagactctatggtctgacattcaagaatttgccaaactcaaatatgagtttgagttgccaaaggatgctaggatgcatgtaaagaaagattcggttatccgtaatctttgccaaaaggtgggcattacaattgcagctcgcagatatgatctgaaatctgcagcaccttttgaaatatcagatatcttgaatcttcaacctgtagtgaaacactctgttcctgtttgttcagaagctaaggatcttgtggaaacagggaaaatccaattggctgagggaatgttgagtgaagcctacacattattttccgaggccttttccatacttcagcaggttacaggcccaatgcatcgggaggttgctaactgctgtcggtatcttgcaatggttctatatcatgctggagacatggcgggagccataatgcaacagcacaaggagctaattataaacgagcgttgcctgggtttggaccaccctgacactgctcacagctatgggaatatggctcttttctatcatggacttaaccaaacagaactcgccttacgacatatgtcccgggcattgctcctgttaagtttgtcatctggcccagatcatcctgatgttgcagcaacattcattaatgttgctatgatgtaccaggatcttgggaagatggacactgctcttcgatatttgcaagaggctttgaaaaagaatgaaaggcttctgggcgaggaacatatccaaactgctgtatgctatcatgcacttgctattgcatttaattgtatgggtgccttcaagctctcccaccagcatgagaagaaaacttatgatatacttgtcaaacaactgggtgaggaggattcgaggacacgtgactctcaaaactggatgaagacatttaagttgcgcgagcaacagatgaatgcacaaaagcaaaaaggtcaagctttgaatgccgcttcagctcaaaaggcaatcgacatgttaaaggccaatcctgacttgatgcaggcattccaatctgctgctatagccggcgggtctgggagttccaacacttctgtcaacaaatctcttaatgctgccgcaataatgggtgaaactcttccccgagggaggggagtagatgagagggctaaacgagcagcagccgaaatcaggaagaaggcagcagcgagaggcctcttaatacgtcaacacggtgttccggtccaagctctgcctccactgactcatctcctcaatatcatgagtgcagcaggtggggccccagattcagtggaaaatggagaaaccaatggagcgaaggaaggcaacaaccatccttcaaatggcccagcagatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU CLU_N DUF727 TPR_10 TPR_12 eIF3_p135

Protein Analysis

1088

Amino Acids

119.6

Weight (kDa)

6.28

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU PF13236 101 - 382 1e-74 Clustered mitochondria
eIF3_p135 PF12807 508 - 692 3.6e-48 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 769 - 832 9e-09 Tetratricopeptide repeat
TPR_12 PF13424 803 - 875 1.1e-12 Tetratricopeptide repeat
TPR_NPHP3 PF24885 814 - 926 1.5e-11 Nephrocystin-3 TPR domain
TPR_12 PF13424 845 - 918 4.4e-14 Tetratricopeptide repeat
TPR_10 PF13374 846 - 886 7.8e-09 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 822, 2375
AarI CACCTGC 1 cut(s) 3170
AasI GACNNNNNNGTC 1 cut(s) 1936
Acc16I TGCGCA 1 cut(s) 685
Acc36I ACCTGC 3 cut(s) 1817, 2248, 3170
AccB1I GGYRCC 2 cut(s) 782, 2708
AccB7I CCANNNNNTGG 1 cut(s) 2044
AccBSI CCGCTC 1 cut(s) 142
AccI GTMKAC 1 cut(s) 620
AccII CGCG 1 cut(s) 2829
AciI CCGC 9 cut(s) 142, 367, 530, 1266, 1421, 2339, 2877, 2958, 3006
AclWI GGATC 8 cut(s) 464, 540, 1039, 1159, 1641, 1713, 2175, 2583
AcoI YGGCCR 1 cut(s) 834
AcsI RAATTY 5 cut(s) 132, 193, 332, 360, 1952
AcuI CTGAAG 4 cut(s) 496, 1572, 2237, 2865
AcvI CACGTG 1 cut(s) 2792
AfaI GTAC 1 cut(s) 2570
AfiI CCNNNNNNNGG 9 cut(s) 1272, 1535, 1536, 2044, 2395, 3036, 3037, 3078, 3251
AflII CTTAAG 2 cut(s) 1679, 1690
AflIII ACRYGT 3 cut(s) 486, 2789, 2901
AjnI CCWGG 9 cut(s) 44, 795, 811, 883, 1203, 1287, 1610, 2388, 2571
AjuI GAANNNNNNNTTGG 4 cut(s) 108, 140, 2177, 2209
AleI CACNNNNGTG 1 cut(s) 231
AloI GAACNNNNNNTCC 4 cut(s) 1005, 1037, 1563, 1595
Alw21I GWGCWC 1 cut(s) 590
Alw26I GTCTC 7 cut(s) 716, 731, 1164, 1171, 1339, 1922, 2325
AlwI GGATC 8 cut(s) 464, 540, 1039, 1159, 1641, 1713, 2175, 2583
AlwNI CAGNNNCTG 1 cut(s) 719
Ama87I CYCGRG 3 cut(s) 473, 2487, 3030
ApaI GGGCCC 1 cut(s) 3190
ApoI RAATTY 5 cut(s) 132, 193, 332, 360, 1952
ArsI GACNNNNNNTTYG 2 cut(s) 1220, 1252
AseI ATTAAT 2 cut(s) 1575, 2553
Asp700I GAANNNNTTC 2 cut(s) 2637, 3024
AspLEI GCGC 2 cut(s) 686, 2829
AsuC2I CCSGG 3 cut(s) 1842, 2488, 2489
AsuHPI GGTGA 7 cut(s) 646, 746, 1255, 1329, 1518, 2783, 3029
AvaI CYCGRG 3 cut(s) 473, 2487, 3030
AvaII GGWCC 4 cut(s) 1207, 1608, 2398, 3130
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 3190
BalI TGGCCA 1 cut(s) 836
BanI GGYRCC 2 cut(s) 782, 2708
BanII GRGCYC 2 cut(s) 379, 3190
BauI CACGAG 1 cut(s) 1131
BbrPI CACGTG 1 cut(s) 2792
BbsI GAAGAC 3 cut(s) 1316, 1384, 2819
Bbv12I GWGCWC 1 cut(s) 590
BbvCI CCTCAGC 1 cut(s) 2199
BccI CCATC 7 cut(s) 1022, 1265, 1529, 1598, 1863, 2581, 3249
BciT130I CCWGG 9 cut(s) 46, 797, 813, 885, 1205, 1289, 1612, 2390, 2573
BcnI CCSGG 3 cut(s) 1842, 2488, 2489
BcoDI GTCTC 7 cut(s) 716, 731, 1164, 1171, 1339, 1922, 2325
BfaI CTAG 3 cut(s) 599, 1803, 1995
BfmI CTRYAG 3 cut(s) 2085, 2127, 2949
BfrI CTTAAG 2 cut(s) 1679, 1690
BfuAI ACCTGC 3 cut(s) 1817, 2248, 3170
BglII AGATCT 1 cut(s) 1504
Bme18I GGWCC 4 cut(s) 1207, 1608, 2398, 3130
BmeT110I CYCGRG 3 cut(s) 473, 2487, 3030
BmiI GGNNCC 7 cut(s) 784, 1609, 2344, 2710, 3187, 3188, 3189
BmrI ACTGGG 1 cut(s) 2777
BmuI ACTGGG 1 cut(s) 2777
BoxI GACNNNNGTC 1 cut(s) 2482
BpiI GAAGAC 3 cut(s) 1316, 1384, 2819
BplI GAGNNNNNCTC 2 cut(s) 1111, 1143
BpmI CTGGAG 2 cut(s) 1899, 2349
Bpu10I CCTNAGC 3 cut(s) 1257, 2163, 2199
BpuEI CTTGAG 2 cut(s) 557, 1195
BpuMI CCSGG 3 cut(s) 1842, 2488, 2489
BsaAI YACGTR 1 cut(s) 2792
BsaBI GATNNNNATC 1 cut(s) 531
BsaI GGTCTC 2 cut(s) 1164, 1171
BsaWI WCCGGW 1 cut(s) 3127
Bsc4I CCNNNNNNNGG 9 cut(s) 1272, 1535, 1536, 2044, 2395, 3036, 3037, 3078, 3251
Bse118I RCCGGY 1 cut(s) 2954
Bse1I ACTGG 7 cut(s) 215, 628, 1061, 1153, 1461, 2772, 2810
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 2 cut(s) 2316, 2492
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 9 cut(s) 46, 797, 813, 885, 1205, 1289, 1612, 2390, 2573
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 9 cut(s) 1272, 1535, 1536, 2044, 2395, 3036, 3037, 3078, 3251
BseMI GCAATG 2 cut(s) 2316, 2492
BseNI ACTGG 7 cut(s) 215, 628, 1061, 1153, 1461, 2772, 2810
BseRI GAGGAG 6 cut(s) 326, 339, 1119, 1439, 2789, 3149
BseSI GKGCMC 1 cut(s) 3190
BseYI CCCAGC 1 cut(s) 3256
BsgI GTGCAG 3 cut(s) 138, 1041, 3195
Bsh1236I CGCG 1 cut(s) 2829
BshNI GGYRCC 2 cut(s) 782, 2708
BsiHKAI GWGCWC 1 cut(s) 590
BsiHKCI CYCGRG 3 cut(s) 473, 2487, 3030
BsiSI CCGG 4 cut(s) 1841, 2488, 2955, 3128
BslFI GGGAC 4 cut(s) 794, 1621, 1872, 2470
BslI CCNNNNNNNGG 9 cut(s) 1272, 1535, 1536, 2044, 2395, 3036, 3037, 3078, 3251
BsmAI GTCTC 7 cut(s) 716, 731, 1164, 1171, 1339, 1922, 2325
BsmFI GGGAC 4 cut(s) 794, 1621, 1872, 2470
BsmI GAATGC 6 cut(s) 698, 888, 1073, 2848, 2878, 2933
Bso31I GGTCTC 2 cut(s) 1164, 1171
BsoBI CYCGRG 3 cut(s) 473, 2487, 3030
Bsp120I GGGCCC 1 cut(s) 3186
Bsp1286I GDGCHC 3 cut(s) 379, 590, 3190
Bsp19I CCATGG 2 cut(s) 705, 1530
BspACI CCGC 9 cut(s) 142, 367, 530, 1266, 1421, 2339, 2877, 2958, 3006
BspFNI CGCG 1 cut(s) 2829
BspHI TCATGA 2 cut(s) 1708, 3168
BspLI GGNNCC 7 cut(s) 784, 1609, 2344, 2710, 3187, 3188, 3189
BspMAI CTGCAG 1 cut(s) 2089
BspMI ACCTGC 3 cut(s) 1817, 2248, 3170
BspPI GGATC 8 cut(s) 464, 540, 1039, 1159, 1641, 1713, 2175, 2583
BspQI GCTCTTC 1 cut(s) 2604
BspT107I GGYRCC 2 cut(s) 782, 2708
BspTI CTTAAG 2 cut(s) 1679, 1690
BspTNI GGTCTC 2 cut(s) 1164, 1171
BsrBI CCGCTC 1 cut(s) 142
BsrDI GCAATG 2 cut(s) 2316, 2492
BsrFI RCCGGY 1 cut(s) 2954
BsrI ACTGG 7 cut(s) 215, 628, 1061, 1153, 1461, 2772, 2810
BssAI RCCGGY 1 cut(s) 2954
BssSI CACGAG 1 cut(s) 1131
BssT1I CCWWGG 4 cut(s) 705, 786, 975, 1530
Bst2BI CACGAG 1 cut(s) 1131
Bst2UI CCWGG 9 cut(s) 46, 797, 813, 885, 1205, 1289, 1612, 2390, 2573
Bst4CI ACNGT 5 cut(s) 1021, 1315, 1745, 1851, 3122
Bst6I CTCTTC 3 cut(s) 1889, 2604, 3030
BstAFI CTTAAG 2 cut(s) 1679, 1690
BstAPI GCANNNNNTGC 2 cut(s) 254, 1562
BstBAI YACGTR 1 cut(s) 2792
BstC8I GCNNGC 6 cut(s) 747, 1722, 2065, 2831, 2931, 2956
BstDSI CCRYGG 2 cut(s) 705, 1530
BstEII GGTNACC 1 cut(s) 1261
BstFNI CGCG 1 cut(s) 2829
BstHHI GCGC 2 cut(s) 686, 2829
BstMAI GTCTC 7 cut(s) 716, 731, 1164, 1171, 1339, 1922, 2325
BstNI CCWGG 9 cut(s) 46, 797, 813, 885, 1205, 1289, 1612, 2390, 2573
BstNSI RCATGY 4 cut(s) 490, 1919, 2006, 2905
BstPAI GACNNNNGTC 1 cut(s) 2482
BstPI GGTNACC 1 cut(s) 1261
BstSFI CTRYAG 3 cut(s) 2085, 2127, 2949
BstSLI GKGCMC 1 cut(s) 3190
BstUI CGCG 1 cut(s) 2829
BstV2I GAAGAC 3 cut(s) 1316, 1384, 2819
BstX2I RGATCY 7 cut(s) 532, 1031, 1151, 1504, 1633, 2167, 2575
BstXI CCANNNNNNTGG 4 cut(s) 198, 982, 1568, 2579
BstYI RGATCY 7 cut(s) 532, 1031, 1151, 1504, 1633, 2167, 2575
Bsu36I CCTNAGG 1 cut(s) 351
BtgI CCRYGG 2 cut(s) 705, 1530
BtgZI GCGATG 1 cut(s) 1279
BtsI GCAGTG 2 cut(s) 2409, 2592
BtsIMutI CAGTG 8 cut(s) 257, 424, 1146, 1395, 2409, 2592, 3146, 3204
BveI ACCTGC 3 cut(s) 1817, 2248, 3170
Cac8I GCNNGC 6 cut(s) 747, 1722, 2065, 2831, 2931, 2956
CaiI CAGNNNCTG 1 cut(s) 719
CciI TCATGA 2 cut(s) 1708, 3168
CfoI GCGC 2 cut(s) 686, 2829
Cfr10I RCCGGY 1 cut(s) 2954
Cfr9I CCCGGG 1 cut(s) 2487
CseI GACGC 1 cut(s) 666
Csp6I GTAC 1 cut(s) 2569
CviQI GTAC 1 cut(s) 2569
DrdI GACNNNNNNGTC 1 cut(s) 1936
DseDI GACNNNNNNGTC 1 cut(s) 1936
EaeI YGGCCR 1 cut(s) 834
Eam1104I CTCTTC 3 cut(s) 1889, 2604, 3030
EarI CTCTTC 3 cut(s) 1889, 2604, 3030
Eco130I CCWWGG 4 cut(s) 705, 786, 975, 1530
Eco147I AGGCCT 2 cut(s) 2240, 3102
Eco24I GRGCYC 2 cut(s) 379, 3190
Eco31I GGTCTC 2 cut(s) 1164, 1171
Eco32I GATATC 1 cut(s) 2110
Eco47I GGWCC 4 cut(s) 1207, 1608, 2398, 3130
Eco57I CTGAAG 4 cut(s) 496, 1572, 2237, 2865
Eco72I CACGTG 1 cut(s) 2792
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 3 cut(s) 473, 2487, 3030
Eco91I GGTNACC 1 cut(s) 1261
EcoO109I RGGNCCY 3 cut(s) 1207, 3186, 3187
EcoO65I GGTNACC 1 cut(s) 1261
EcoRII CCWGG 9 cut(s) 44, 795, 811, 883, 1203, 1287, 1610, 2388, 2571
EcoRV GATATC 1 cut(s) 2110
EcoT14I CCWWGG 4 cut(s) 705, 786, 975, 1530
EcoT22I ATGCAT 4 cut(s) 449, 1917, 2004, 2277
EcoT38I GRGCYC 2 cut(s) 379, 3190
ErhI CCWWGG 4 cut(s) 705, 786, 975, 1530
FalI AAGNNNNNCTT 2 cut(s) 1673, 1705
FaqI GGGAC 4 cut(s) 794, 1621, 1872, 2470
FauI CCCGC 3 cut(s) 360, 2332, 2951
FauNDI CATATG 2 cut(s) 558, 2481
FblI GTMKAC 1 cut(s) 620
FriOI GRGCYC 2 cut(s) 379, 3190
FspBI CTAG 3 cut(s) 599, 1803, 1995
FspI TGCGCA 1 cut(s) 685
GlaI GCGC 2 cut(s) 685, 2828
GsaI CCCAGC 1 cut(s) 3260
GsuI CTGGAG 2 cut(s) 1899, 2349
HapII CCGG 4 cut(s) 1841, 2488, 2955, 3128
HgaI GACGC 1 cut(s) 666
HhaI GCGC 2 cut(s) 686, 2829
Hin6I GCGC 2 cut(s) 684, 2827
HinP1I GCGC 2 cut(s) 684, 2827
HincII GTYRAC 2 cut(s) 2986, 3116
HindII GTYRAC 2 cut(s) 2986, 3116
HindIII AAGCTT 2 cut(s) 120, 2865
HpaII CCGG 4 cut(s) 1841, 2488, 2955, 3128
HphI GGTGA 7 cut(s) 646, 746, 1255, 1329, 1518, 2783, 3029
Hpy166II GTNNAC 4 cut(s) 496, 621, 2986, 3116
Hpy8I GTNNAC 4 cut(s) 496, 621, 2986, 3116
HpyAV CCTTC 8 cut(s) 1010, 1241, 1867, 2722, 3079, 3220, 3224, 3255
HpyCH4III ACNGT 5 cut(s) 1021, 1315, 1745, 1851, 3122
HpyCH4IV ACGT 4 cut(s) 171, 232, 2791, 3112
HpySE526I ACGT 4 cut(s) 171, 232, 2791, 3112
HspAI GCGC 2 cut(s) 684, 2827
KroI GCCGGC 1 cut(s) 2954
KroNI GCCGGC 1 cut(s) 2956
LguI GCTCTTC 1 cut(s) 2604
LmnI GCTCC 8 cut(s) 26, 139, 585, 1880, 2342, 2365, 2502, 3221
MaeI CTAG 3 cut(s) 599, 1803, 1995
MaeII ACGT 4 cut(s) 171, 232, 2791, 3112
MaeIII GTNAC 7 cut(s) 183, 207, 388, 1123, 1261, 2260, 2792
MbiI CCGCTC 1 cut(s) 142
MfeI CAATTG 3 cut(s) 728, 2055, 2192
MflI RGATCY 7 cut(s) 532, 1031, 1151, 1504, 1633, 2167, 2575
MhlI GDGCHC 3 cut(s) 379, 590, 3190
MlsI TGGCCA 1 cut(s) 836
MluNI TGGCCA 1 cut(s) 836
MlyI GAGTC 4 cut(s) 905, 1924, 2789, 3145
MmeI TCCRAC 3 cut(s) 409, 488, 2997
Mox20I TGGCCA 1 cut(s) 836
Mph1103I ATGCAT 4 cut(s) 449, 1917, 2004, 2277
MroNI GCCGGC 1 cut(s) 2954
MroXI GAANNNNTTC 2 cut(s) 2637, 3024
MscI TGGCCA 1 cut(s) 836
MslI CAYNNNNRTG 6 cut(s) 231, 489, 1566, 2421, 2532, 2730
Msp20I TGGCCA 1 cut(s) 836
MspA1I CMGCKG 4 cut(s) 544, 716, 1268, 1346
MspCI CTTAAG 2 cut(s) 1679, 1690
MspI CCGG 4 cut(s) 1841, 2488, 2955, 3128
MunI CAATTG 3 cut(s) 728, 2055, 2192
Mva1269I GAATGC 6 cut(s) 698, 888, 1073, 2848, 2878, 2933
MvaI CCWGG 9 cut(s) 46, 797, 813, 885, 1205, 1289, 1612, 2390, 2573
MvnI CGCG 1 cut(s) 2829
NaeI GCCGGC 1 cut(s) 2956
NciI CCSGG 3 cut(s) 1842, 2488, 2489
NcoI CCATGG 2 cut(s) 705, 1530
NdeI CATATG 2 cut(s) 558, 2481
NgoMIV GCCGGC 1 cut(s) 2954
NlaIV GGNNCC 7 cut(s) 784, 1609, 2344, 2710, 3187, 3188, 3189
NmuCI GTSAC 3 cut(s) 388, 1261, 2792
NsbI TGCGCA 1 cut(s) 685
NsiI ATGCAT 4 cut(s) 449, 1917, 2004, 2277
NspI RCATGY 4 cut(s) 490, 1919, 2006, 2905
OliI CACNNNNGTG 1 cut(s) 231
PagI TCATGA 2 cut(s) 1708, 3168
PaqCI CACCTGC 1 cut(s) 3170
PceI AGGCCT 2 cut(s) 2240, 3102
PciI ACATGT 2 cut(s) 486, 2901
PciSI GCTCTTC 1 cut(s) 2604
PctI GAATGC 6 cut(s) 698, 888, 1073, 2848, 2878, 2933
PdiI GCCGGC 1 cut(s) 2956
PdmI GAANNNNTTC 2 cut(s) 2637, 3024
PfeI GAWTC 6 cut(s) 710, 1358, 2015, 2116, 2780, 3194
PflMI CCANNNNNTGG 1 cut(s) 2044
PfoI TCCNGGA 1 cut(s) 1840
PleI GAGTC 4 cut(s) 905, 1924, 2789, 3145
PmaCI CACGTG 1 cut(s) 2792
PmlI CACGTG 1 cut(s) 2792
PpsI GAGTC 4 cut(s) 905, 1924, 2789, 3145
Ppu21I YACGTR 1 cut(s) 2792
PpuMI RGGWCCY 1 cut(s) 1207
PscI ACATGT 2 cut(s) 486, 2901
PshAI GACNNNNGTC 1 cut(s) 2482
PshBI ATTAAT 2 cut(s) 1575, 2553
PsiI TTATAA 2 cut(s) 822, 2375
Psp5II RGGWCCY 1 cut(s) 1207
Psp6I CCWGG 9 cut(s) 44, 795, 811, 883, 1203, 1287, 1610, 2388, 2571
PspCI CACGTG 1 cut(s) 2792
PspEI GGTNACC 1 cut(s) 1261
PspFI CCCAGC 1 cut(s) 3256
PspGI CCWGG 9 cut(s) 44, 795, 811, 883, 1203, 1287, 1610, 2388, 2571
PspN4I GGNNCC 7 cut(s) 784, 1609, 2344, 2710, 3187, 3188, 3189
PspOMI GGGCCC 1 cut(s) 3186
PspPPI RGGWCCY 1 cut(s) 1207
PsrI GAACNNNNNNTAC 2 cut(s) 2457, 2489
PstI CTGCAG 1 cut(s) 2089
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 7 cut(s) 532, 1031, 1151, 1504, 1633, 2167, 2575
PvuII CAGCTG 3 cut(s) 544, 716, 1346
RsaI GTAC 1 cut(s) 2570
RsaNI GTAC 1 cut(s) 2569
RseI CAYNNNNRTG 6 cut(s) 231, 489, 1566, 2421, 2532, 2730
SapI GCTCTTC 1 cut(s) 2604
SchI GAGTC 4 cut(s) 905, 1924, 2789, 3145
SduI GDGCHC 3 cut(s) 379, 590, 3190
SfcI CTRYAG 3 cut(s) 2085, 2127, 2949
SinI GGWCC 4 cut(s) 1207, 1608, 2398, 3130
SmaI CCCGGG 1 cut(s) 2489
SmiMI CAYNNNNRTG 6 cut(s) 231, 489, 1566, 2421, 2532, 2730
SmlI CTYRAG 4 cut(s) 536, 1174, 1679, 1690
SmoI CTYRAG 4 cut(s) 536, 1174, 1679, 1690
SseBI AGGCCT 2 cut(s) 2240, 3102
SsiI CCGC 9 cut(s) 142, 367, 530, 1266, 1421, 2339, 2877, 2958, 3006
SspMI CTAG 3 cut(s) 599, 1803, 1995
StuI AGGCCT 2 cut(s) 2240, 3102
StyI CCWWGG 4 cut(s) 705, 786, 975, 1530
TaaI ACNGT 5 cut(s) 1021, 1315, 1745, 1851, 3122
TaiI ACGT 4 cut(s) 174, 235, 2794, 3115
TaqI TCGA 7 cut(s) 1026, 1065, 1162, 1232, 2602, 2783, 2898
TauI GCSGC 2 cut(s) 2879, 3008
TfiI GAWTC 6 cut(s) 710, 1358, 2015, 2116, 2780, 3194
TscAI CASTG 8 cut(s) 264, 424, 1153, 1402, 2416, 2599, 3153, 3204
TseFI GTSAC 3 cut(s) 388, 1261, 2792
Tsp45I GTSAC 3 cut(s) 388, 1261, 2792
TspGWI ACGGA 2 cut(s) 13, 2015
TspMI CCCGGG 1 cut(s) 2487
TspRI CASTG 8 cut(s) 264, 424, 1153, 1402, 2416, 2599, 3153, 3204
Van91I CCANNNNNTGG 1 cut(s) 2044
Vha464I CTTAAG 2 cut(s) 1679, 1690
VpaK11BI GGWCC 4 cut(s) 1207, 1608, 2398, 3130
VspI ATTAAT 2 cut(s) 1575, 2553
XapI RAATTY 5 cut(s) 132, 193, 332, 360, 1952
XbaI TCTAGA 1 cut(s) 1802
XceI RCATGY 4 cut(s) 490, 1919, 2006, 2905
XcmI CCANNNNNNNNNTGG 3 cut(s) 195, 577, 3248
XmaI CCCGGG 1 cut(s) 2487
XmiI GTMKAC 1 cut(s) 620
XmnI GAANNNNTTC 2 cut(s) 2637, 3024
XspI CTAG 3 cut(s) 599, 1803, 1995
Zsp2I ATGCAT 4 cut(s) 449, 1917, 2004, 2277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.