Rmu_sc0005300.1_g000001

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005300.1
OG0006913
Physical Location & Seq
Forward (+)
7293 .. 9540
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1575 bp
atgcgtccttatgccagtggagcatgggacgtaagcacaaaacaagtggagatcaatagcgagccctacgtcacaaattatggagccaggaaaattgtcaaagagttggaggtgagtgagccttatatggccaattatggtggcagaaaaattgtgaaagaggtggagataagtgtgccttacatgaccaactatggtgctagagaaagtgtgaaagaagtggagaaaagcgagccttacatgaccaattatggagctagaaaatttgtgggagaagtggaggtaagcgagccatacatgaccaactacggagctagagaaagtgtggaaacagtggaggtaagagagccttacatgaccaactatggagttagagaaagtgcagttgaggcaagcgagccttccatgaccaactatggagctagaaaaagtgtgaaagaagtggaggtaagagagccttacatgaccaactatggagctacagaaagtgtgaaagaaggtgagaaaccttacatgacgaactatggagctagaaaaagtgtgaaagaagtgaaggcaagagagccttacatgaccaactatggagctacagaaactgtgaaagaagctgaggagccttatatgaccaattatggaaataaagaggcatcttacattacccaatatggaaacaaagaagacataaaagaaacacaggcttcttacataacccagtacggagataaagaagctgaggctacttacataaatcagtacggaaacaaagaaactgaggcttcttacataacccagtatggcacacaaggaggagaaaacaaagtacagaagccagttccatccgcccatgagcagcatgatcatatgcatgcacattcatcatctcgcaatgaggcacacgagcaaggctttttcactttagttgatttccataaggggagtacaatgccactcaacttcccaaaccaagaccattctcctttcttgcctaagaaaacagctgattcccttccattctcaacatcacaactcccacaccttctccaactcttctcgatcccacgcgattctcgtgacgccaaacacatggcgtacacacttgatcaatgcgagcaaaaacccatcaagggtgagaccaagttttgtgctacttcgctagagtcaatgaataatttcgttcacaaaatcattggttctgggatcaaattcaatattctctccacgacccacccctcaacctcaacctccattacacagaagtacacgattctggaagaacctaaacaagtcatagcttccaaaatggtcttttgccatccggtcccttatccttacgctgttttcttttgccaccactttgagagcgacaccaggttcttccaggtctcactaggaggtgagaatggagataaggtggaagccgtagcggtttgccacatggacacttctgattgggattctaagctcagtctgttccgcaacttgggtatcaaagctagtgcctcctctccggtgtgccatttcttcccggaaaatcatcttgtttggattccattcccagcaacagctactgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

524

Amino Acids

59.21

Weight (kDa)

5.82

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 303 - 516 1.3e-71 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1062
AciI CCGC 3 cut(s) 840, 1424, 1474
AclWI GGATC 2 cut(s) 1048, 1205
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 2 cut(s) 263, 1202
AcyI GRCGYC 1 cut(s) 1074
AfaI GTAC 6 cut(s) 716, 755, 822, 940, 1091, 1259
AfiI CCNNNNNNNGG 2 cut(s) 1124, 1480
AgsI TTSAA 1 cut(s) 1207
AjnI CCWGG 3 cut(s) 86, 1367, 1377
Alw26I GTCTC 2 cut(s) 1124, 1387
AlwI GGATC 2 cut(s) 1048, 1205
AlwNI CAGNNNCTG 2 cut(s) 596, 1568
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 850
ApoI RAATTY 2 cut(s) 263, 1202
Asp700I GAANNNNTTC 1 cut(s) 1169
AspS9I GGNCC 1 cut(s) 1318
AsuC2I CCSGG 1 cut(s) 1526
AsuHPI GGTGA 4 cut(s) 124, 512, 1139, 1406
AvaII GGWCC 1 cut(s) 1318
BaeI ACNNNNGTAYC 2 cut(s) 1468, 1501
BalI TGGCCA 1 cut(s) 131
BanII GRGCYC 1 cut(s) 66
BauI CACGAG 2 cut(s) 896, 1068
BbsI GAAGAC 1 cut(s) 684
BbvCI CCTCAGC 2 cut(s) 609, 732
BbvI GCAGC 1 cut(s) 862
BccI CCATC 3 cut(s) 844, 1127, 1320
BceAI ACGGC 1 cut(s) 1403
BciT130I CCWGG 3 cut(s) 88, 1369, 1379
BclI TGATCA 2 cut(s) 856, 1099
BcnI CCSGG 1 cut(s) 1526
BcoDI GTCTC 2 cut(s) 1124, 1387
BfaI CTAG 8 cut(s) 201, 258, 315, 423, 531, 1154, 1388, 1494
BfmI CTRYAG 2 cut(s) 480, 588
BisI GCNGC 1 cut(s) 851
BlsI GCNGC 1 cut(s) 852
Bme1390I CCNGG 4 cut(s) 88, 1369, 1379, 1526
Bme18I GGWCC 1 cut(s) 1318
BmgT120I GGNCC 1 cut(s) 1318
BmiI GGNNCC 3 cut(s) 85, 615, 1320
BmrFI CCNGG 4 cut(s) 88, 1369, 1379, 1526
BmrI ACTGGG 2 cut(s) 706, 784
BmsI GCATC 1 cut(s) 656
BmuI ACTGGG 2 cut(s) 706, 784
BpiI GAAGAC 1 cut(s) 684
Bpu10I CCTNAGC 2 cut(s) 609, 732
BpuMI CCSGG 1 cut(s) 1526
BsaHI GRCGYC 1 cut(s) 1074
BsaI GGTCTC 2 cut(s) 1124, 1387
BsaWI WCCGGW 2 cut(s) 1315, 1507
BsaXI ACNNNNNCTCC 4 cut(s) 1023, 1053, 1395, 1425
Bsc4I CCNNNNNNNGG 2 cut(s) 1124, 1480
Bse1I ACTGG 4 cut(s) 15, 712, 790, 830
Bse3DI GCAATG 1 cut(s) 892
BseBI CCWGG 3 cut(s) 88, 1369, 1379
BseGI GGATG 2 cut(s) 836, 1312
BseLI CCNNNNNNNGG 2 cut(s) 1124, 1480
BseMI GCAATG 1 cut(s) 892
BseMII CTCAG 4 cut(s) 600, 723, 762, 1477
BseNI ACTGG 4 cut(s) 15, 712, 790, 830
BseRI GAGGAG 3 cut(s) 626, 822, 1492
BseXI GCAGC 1 cut(s) 862
BseYI CCCAGC 1 cut(s) 1555
BsgI GTGCAG 1 cut(s) 402
Bsh1236I CGCG 1 cut(s) 1062
BshFI GGCC 1 cut(s) 131
BsiSI CCGG 3 cut(s) 1316, 1508, 1526
BslFI GGGAC 2 cut(s) 41, 1304
BslI CCNNNNNNNGG 2 cut(s) 1124, 1480
BsmAI GTCTC 2 cut(s) 1124, 1387
BsmFI GGGAC 2 cut(s) 41, 1304
BsnI GGCC 1 cut(s) 131
Bso31I GGTCTC 2 cut(s) 1124, 1387
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 5 cut(s) 51, 856, 1053, 1099, 1197
BspACI CCGC 3 cut(s) 840, 1424, 1474
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 4 cut(s) 601, 724, 763, 1476
BspFNI CGCG 1 cut(s) 1062
BspLI GGNNCC 3 cut(s) 85, 615, 1320
BspPI GGATC 2 cut(s) 1048, 1205
BspTNI GGTCTC 2 cut(s) 1124, 1387
BsrDI GCAATG 1 cut(s) 892
BsrI ACTGG 4 cut(s) 15, 712, 790, 830
BssMI GATC 5 cut(s) 51, 856, 1053, 1099, 1197
BssNI GRCGYC 1 cut(s) 1074
BssSI CACGAG 2 cut(s) 896, 1068
Bst2BI CACGAG 2 cut(s) 896, 1068
Bst2UI CCWGG 3 cut(s) 88, 1369, 1379
Bst4CI ACNGT 2 cut(s) 334, 598
Bst6I CTCTTC 1 cut(s) 1052
BstACI GRCGYC 1 cut(s) 1074
BstC8I GCNNGC 7 cut(s) 62, 233, 290, 394, 398, 867, 1109
BstDEI CTNAG 6 cut(s) 609, 732, 771, 987, 1458, 1463
BstF5I GGATG 2 cut(s) 836, 1312
BstFNI CGCG 1 cut(s) 1062
BstKTI GATC 5 cut(s) 54, 859, 1056, 1102, 1200
BstMAI GTCTC 2 cut(s) 1124, 1387
BstMBI GATC 5 cut(s) 51, 856, 1053, 1099, 1197
BstMWI GCNNNNNNNGC 2 cut(s) 20, 389
BstNI CCWGG 3 cut(s) 88, 1369, 1379
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 4 cut(s) 86, 1367, 1377, 1524
BstSFI CTRYAG 2 cut(s) 480, 588
BstUI CGCG 1 cut(s) 1062
BstV1I GCAGC 1 cut(s) 862
BstV2I GAAGAC 1 cut(s) 684
BstXI CCANNNNNNTGG 1 cut(s) 1084
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 2 cut(s) 836, 1312
BtsIMutI CAGTG 2 cut(s) 22, 339
Cac8I GCNNGC 7 cut(s) 62, 233, 290, 394, 398, 867, 1109
CaiI CAGNNNCTG 2 cut(s) 596, 1568
Cfr13I GGNCC 1 cut(s) 1318
CseI GACGC 1 cut(s) 1082
CsiI ACCWGGT 1 cut(s) 1367
Csp6I GTAC 6 cut(s) 715, 754, 821, 939, 1090, 1258
CspCI CAANNNNNGTGG 4 cut(s) 27, 62, 121, 156
CviQI GTAC 6 cut(s) 715, 754, 821, 939, 1090, 1258
DdeI CTNAG 6 cut(s) 609, 732, 771, 987, 1458, 1463
DpnI GATC 5 cut(s) 53, 858, 1055, 1101, 1199
DpnII GATC 5 cut(s) 51, 856, 1053, 1099, 1197
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 1052
EarI CTCTTC 1 cut(s) 1052
EciI GGCGGA 1 cut(s) 829
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 2 cut(s) 1124, 1387
Eco47I GGWCC 1 cut(s) 1318
EcoRII CCWGG 3 cut(s) 86, 1367, 1377
EcoT22I ATGCAT 1 cut(s) 867
EcoT38I GRGCYC 1 cut(s) 66
FaqI GGGAC 2 cut(s) 41, 1304
FauNDI CATATG 1 cut(s) 861
FbaI TGATCA 2 cut(s) 856, 1099
Fnu4HI GCNGC 1 cut(s) 851
FokI GGATG 2 cut(s) 823, 1299
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 851
FspBI CTAG 8 cut(s) 201, 258, 315, 423, 531, 1154, 1388, 1494
GluI GCNGC 1 cut(s) 851
GsaI CCCAGC 1 cut(s) 1559
HaeIII GGCC 1 cut(s) 131
HapII CCGG 3 cut(s) 1316, 1508, 1526
HgaI GACGC 1 cut(s) 1082
Hin1I GRCGYC 1 cut(s) 1074
HinfI GANTC 6 cut(s) 1001, 1064, 1157, 1264, 1454, 1546
HpaII CCGG 3 cut(s) 1316, 1508, 1526
HphI GGTGA 4 cut(s) 124, 512, 1139, 1406
Hpy166II GTNNAC 3 cut(s) 1092, 1177, 1260
Hpy188I TCNGA 1 cut(s) 1447
Hpy188III TCNNGA 3 cut(s) 1051, 1070, 1268
Hpy8I GTNNAC 3 cut(s) 1092, 1177, 1260
HpyAV CCTTC 5 cut(s) 411, 491, 547, 1016, 1046
HpyCH4III ACNGT 2 cut(s) 334, 598
HpyCH4IV ACGT 2 cut(s) 30, 69
HpyCH4V TGCA 3 cut(s) 383, 865, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 389
HpyF3I CTNAG 6 cut(s) 609, 732, 771, 987, 1458, 1463
HpySE526I ACGT 2 cut(s) 30, 69
Hsp92I GRCGYC 1 cut(s) 1074
Ksp22I TGATCA 2 cut(s) 856, 1099
Kzo9I GATC 5 cut(s) 51, 856, 1053, 1099, 1197
LmnI GCTCC 9 cut(s) 20, 83, 254, 311, 419, 476, 527, 584, 613
Lsp1109I GCAGC 1 cut(s) 862
LweI GCATC 1 cut(s) 656
MabI ACCWGGT 1 cut(s) 1367
MaeI CTAG 8 cut(s) 201, 258, 315, 423, 531, 1154, 1388, 1494
MaeII ACGT 2 cut(s) 30, 69
MaeIII GTNAC 2 cut(s) 70, 1070
MalI GATC 5 cut(s) 53, 858, 1055, 1101, 1199
MboI GATC 5 cut(s) 51, 856, 1053, 1099, 1197
MboII GAAGA 5 cut(s) 689, 1039, 1283, 1366, 1513
MhlI GDGCHC 1 cut(s) 66
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 9 cut(s) 76, 93, 133, 150, 247, 263, 628, 1168, 1202
MluNI TGGCCA 1 cut(s) 131
MlyI GAGTC 1 cut(s) 1166
MmeI TCCRAC 2 cut(s) 87, 1066
Mox20I TGGCCA 1 cut(s) 131
Mph1103I ATGCAT 1 cut(s) 867
MroXI GAANNNNTTC 1 cut(s) 1169
MscI TGGCCA 1 cut(s) 131
MslI CAYNNNNRTG 1 cut(s) 864
Msp20I TGGCCA 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 998
MspI CCGG 3 cut(s) 1316, 1508, 1526
MspR9I CCNGG 4 cut(s) 88, 1369, 1379, 1526
MvaI CCWGG 3 cut(s) 88, 1369, 1379
MvnI CGCG 1 cut(s) 1062
MwoI GCNNNNNNNGC 2 cut(s) 20, 389
NciI CCSGG 1 cut(s) 1526
NdeI CATATG 1 cut(s) 861
NdeII GATC 5 cut(s) 51, 856, 1053, 1099, 1197
NlaIV GGNNCC 3 cut(s) 85, 615, 1320
NmuCI GTSAC 2 cut(s) 70, 1070
NsiI ATGCAT 1 cut(s) 867
NspI RCATGY 1 cut(s) 869
PaeI GCATGC 1 cut(s) 869
PcsI WCGNNNNNNNCGW 1 cut(s) 1066
PdmI GAANNNNTTC 1 cut(s) 1169
PfeI GAWTC 5 cut(s) 1001, 1064, 1264, 1454, 1546
PfoI TCCNGGA 1 cut(s) 1524
PkrI GCNGC 1 cut(s) 852
PleI GAGTC 1 cut(s) 1165
PpsI GAGTC 1 cut(s) 1165
Psp6I CCWGG 3 cut(s) 86, 1367, 1377
PspFI CCCAGC 1 cut(s) 1555
PspGI CCWGG 3 cut(s) 86, 1367, 1377
PspN4I GGNNCC 3 cut(s) 85, 615, 1320
PspPI GGNCC 1 cut(s) 1318
PstNI CAGNNNCTG 2 cut(s) 596, 1568
PvuII CAGCTG 1 cut(s) 998
RsaI GTAC 6 cut(s) 716, 755, 822, 940, 1091, 1259
RsaNI GTAC 6 cut(s) 715, 754, 821, 939, 1090, 1258
RseI CAYNNNNRTG 1 cut(s) 864
SatI GCNGC 1 cut(s) 851
Sau3AI GATC 5 cut(s) 51, 856, 1053, 1099, 1197
Sau96I GGNCC 1 cut(s) 1318
SchI GAGTC 1 cut(s) 1166
ScrFI CCNGG 4 cut(s) 88, 1369, 1379, 1526
SduI GDGCHC 1 cut(s) 66
SexAI ACCWGGT 1 cut(s) 1367
SfaNI GCATC 1 cut(s) 656
SfcI CTRYAG 2 cut(s) 480, 588
SinI GGWCC 1 cut(s) 1318
SmiMI CAYNNNNRTG 1 cut(s) 864
SphI GCATGC 1 cut(s) 869
Sse9I AATT 9 cut(s) 76, 93, 133, 150, 247, 263, 628, 1168, 1202
SsiI CCGC 3 cut(s) 840, 1424, 1474
SspI AATATT 1 cut(s) 1210
SspMI CTAG 8 cut(s) 201, 258, 315, 423, 531, 1154, 1388, 1494
StyD4I CCNGG 4 cut(s) 86, 1367, 1377, 1524
TaaI ACNGT 2 cut(s) 334, 598
TaiI ACGT 2 cut(s) 33, 72
TaqI TCGA 1 cut(s) 1052
TasI AATT 9 cut(s) 76, 93, 133, 150, 247, 263, 628, 1168, 1202
TatI WGTACW 3 cut(s) 820, 938, 1257
TfiI GAWTC 5 cut(s) 1001, 1064, 1264, 1454, 1546
TscAI CASTG 2 cut(s) 22, 339
TseFI GTSAC 2 cut(s) 70, 1070
TseI GCWGC 1 cut(s) 850
Tsp45I GTSAC 2 cut(s) 70, 1070
TspDTI ATGAA 2 cut(s) 864, 1178
TspGWI ACGGA 3 cut(s) 324, 732, 771
TspRI CASTG 2 cut(s) 22, 339
VpaK11BI GGWCC 1 cut(s) 1318
XapI RAATTY 2 cut(s) 263, 1202
XceI RCATGY 1 cut(s) 869
XmnI GAANNNNTTC 1 cut(s) 1169
XspI CTAG 8 cut(s) 201, 258, 315, 423, 531, 1154, 1388, 1494
Zsp2I ATGCAT 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.