Rmu_sc0005634.1_g000010

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005634.1
OG0008911
Physical Location & Seq
Forward (+)
48422 .. 49327
906 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
atggattatgaggatctgcttgctctaatcgtcaataagattagcaacccagatgatagaagatcattttcggaggtctgcaagcaatggctgagagtggaaggtctaaaccgatcatcccttaatcttctccgatccgaatatctccatcaggtactccctagattcccaaatttactcacatttgaaacttccaagcctatcactcaaaccaacctcaagttcatacctcaaacttgtcgcgatctcgaggccatcaacctcaggaccaaagatcaccctccatttaagaaaagtcctgactattgggtcgatgactgcaccattgctgctcttgctgagaactgccgcaacttggaggtgcttaatataagtcgttgttctttggtaactggagctggtattcgtgcattttcaactcatccgtacttagaatctcttgtgtatgatgggaacatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

153

Amino Acids

17.6

Weight (kDa)

6.29

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 4 - 39 4.1e-06 F-box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AccII CGCG 1 cut(s) 243
AciI CCGC 1 cut(s) 349
AclWI GGATC 2 cut(s) 21, 129
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 2 cut(s) 156, 428
AfiI CCNNNNNNNGG 1 cut(s) 355
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 2 cut(s) 188, 417
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
AlwI GGATC 2 cut(s) 21, 129
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 1 cut(s) 267
AxyI CCTNAGG 1 cut(s) 263
BbvI GCAGC 1 cut(s) 316
BccI CCATC 3 cut(s) 156, 263, 443
BfaI CTAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 330, 349
BlsI GCNGC 2 cut(s) 331, 350
Bme18I GGWCC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 397
Bse21I CCTNAGG 1 cut(s) 263
Bse3DI GCAATG 2 cut(s) 92, 324
BseGI GGATG 2 cut(s) 116, 421
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMI GCAATG 2 cut(s) 92, 324
BseMII CTCAG 3 cut(s) 83, 277, 330
BseNI ACTGG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 355
BsnI GGCC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 248
Bsp143I GATC 6 cut(s) 13, 62, 113, 134, 244, 274
Bsp68I TCGCGA 1 cut(s) 243
BspACI CCGC 1 cut(s) 349
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 3 cut(s) 84, 276, 331
BspFNI CGCG 1 cut(s) 243
BspPI GGATC 2 cut(s) 21, 129
BsrDI GCAATG 2 cut(s) 92, 324
BsrI ACTGG 1 cut(s) 397
BssMI GATC 6 cut(s) 13, 62, 113, 134, 244, 274
BstC8I GCNNGC 2 cut(s) 21, 83
BstDEI CTNAG 4 cut(s) 92, 263, 339, 430
BstF5I GGATG 2 cut(s) 116, 421
BstFNI CGCG 1 cut(s) 243
BstKTI GATC 6 cut(s) 16, 65, 116, 137, 247, 277
BstMBI GATC 6 cut(s) 13, 62, 113, 134, 244, 274
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 460
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
Bsu36I CCTNAGG 1 cut(s) 263
BsuRI GGCC 1 cut(s) 254
BtsCI GGATG 2 cut(s) 116, 421
BtuMI TCGCGA 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 21, 83
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 2 cut(s) 155, 427
CviAII CATG 1 cut(s) 457
CviJI RGCY 4 cut(s) 91, 199, 254, 398
CviKI_1 RGCY 4 cut(s) 91, 199, 254, 398
CviQI GTAC 2 cut(s) 155, 427
DdeI CTNAG 4 cut(s) 92, 263, 339, 430
DpnI GATC 6 cut(s) 15, 64, 115, 136, 246, 276
DpnII GATC 6 cut(s) 13, 62, 113, 134, 244, 274
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 248
FaeI CATG 1 cut(s) 460
FaiI YATR 5 cut(s) 9, 227, 371, 447, 458
FatI CATG 1 cut(s) 456
Fnu4HI GCNGC 2 cut(s) 330, 349
FokI GGATG 2 cut(s) 103, 408
Fsp4HI GCNGC 2 cut(s) 330, 349
FspBI CTAG 1 cut(s) 162
GluI GCNGC 2 cut(s) 330, 349
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 1 cut(s) 254
Hin1II CATG 1 cut(s) 460
HinfI GANTC 2 cut(s) 165, 434
HphI GGTGA 1 cut(s) 269
Hpy188I TCNGA 3 cut(s) 73, 134, 139
Hpy188III TCNNGA 4 cut(s) 242, 248, 265, 299
HpyAV CCTTC 1 cut(s) 95
HpyCH4V TGCA 3 cut(s) 81, 321, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 4 cut(s) 92, 263, 339, 430
Hsp92II CATG 1 cut(s) 460
Kzo9I GATC 6 cut(s) 13, 62, 113, 134, 244, 274
LmnI GCTCC 1 cut(s) 395
LpnPI CCDG 6 cut(s) 63, 137, 250, 312, 378, 384
Lsp1109I GCAGC 1 cut(s) 316
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 388
MalI GATC 6 cut(s) 15, 64, 115, 136, 246, 276
MboI GATC 6 cut(s) 13, 62, 113, 134, 244, 274
MboII GAAGA 2 cut(s) 72, 119
MflI RGATCY 1 cut(s) 13
MluCI AATT 1 cut(s) 172
MnlI CCTC 8 cut(s) 4, 67, 227, 240, 244, 272, 291, 352
MseI TTAA 3 cut(s) 123, 288, 366
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 6 cut(s) 13, 62, 113, 134, 244, 274
NlaIII CATG 1 cut(s) 460
NruI TCGCGA 1 cut(s) 243
NspI RCATGY 1 cut(s) 460
PaeR7I CTCGAG 1 cut(s) 248
PciI ACATGT 1 cut(s) 456
PfeI GAWTC 2 cut(s) 165, 434
PkrI GCNGC 2 cut(s) 331, 350
PscI ACATGT 1 cut(s) 456
PspPI GGNCC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 13
RruI TCGCGA 1 cut(s) 243
RsaI GTAC 2 cut(s) 156, 428
RsaNI GTAC 2 cut(s) 155, 427
SaqAI TTAA 3 cut(s) 123, 288, 366
SatI GCNGC 2 cut(s) 330, 349
Sau3AI GATC 6 cut(s) 13, 62, 113, 134, 244, 274
Sau96I GGNCC 1 cut(s) 267
SetI ASST 8 cut(s) 78, 106, 156, 219, 232, 264, 363, 400
Sfr274I CTCGAG 1 cut(s) 248
SinI GGWCC 1 cut(s) 267
SlaI CTCGAG 1 cut(s) 248
SmlI CTYRAG 2 cut(s) 218, 248
SmoI CTYRAG 2 cut(s) 218, 248
Sse9I AATT 1 cut(s) 172
SsiI CCGC 1 cut(s) 349
SspMI CTAG 1 cut(s) 162
TaqI TCGA 2 cut(s) 249, 312
TasI AATT 1 cut(s) 172
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 2 cut(s) 165, 434
Tru1I TTAA 3 cut(s) 123, 288, 366
Tru9I TTAA 3 cut(s) 123, 288, 366
TseI GCWGC 1 cut(s) 329
TspDTI ATGAA 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 1 cut(s) 172
XceI RCATGY 1 cut(s) 460
XhoI CTCGAG 1 cut(s) 248
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.