Rmu_sc0006010.1_g000010

THO complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006010.1
OG0006312
Physical Location & Seq
Reverse (-)
30316 .. 33875
3560 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
atgattagtaccatcctccagaatattgcaggctcagctgaagtggtttataccagaagaagtgacgcatttgcagcattgaaacgctataataatgtcctattggatgggaagcctatgaagatcgagattgttggtgccaatgagggaatgccaatttctgcacgtgtcaatgtgacaggagtacaaggaagaaagaagaggacagttgtaatgacgcccagacctggtcatgctggtggctatgctttgcctgcggttaatcgtggtcctggcccttctaggagttctcgtggagggatcaggaatggccgtggaattccacgtggtcgtggtcgtggccgtgggcgtgggcgtgggcatggacaaggacctgagaggaagaaacctgttgacaagtcagttgatgaacttgacaaggaacttgatagctatcatgcagaagccatgcaaacttag

Protein Analysis

152

Amino Acids

16.33

Weight (kDa)

11.07

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FoP_duplication PF13865 95 - 148 2.7e-10 C-terminal duplication domain of Friend of PRMT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AciI CCGC 1 cut(s) 257
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 2 cut(s) 310, 340
AcsI RAATTY 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 60
AcvI CACGTG 2 cut(s) 167, 326
AcyI GRCGYC 1 cut(s) 218
AfaI GTAC 2 cut(s) 10, 186
AfiI CCNNNNNNNGG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 2 cut(s) 226, 271
AluBI AGCT 2 cut(s) 38, 432
AluI AGCT 2 cut(s) 38, 432
AlwI GGATC 1 cut(s) 308
AoxI GGCC 3 cut(s) 274, 310, 340
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 318
AspS9I GGNCC 3 cut(s) 269, 275, 371
AvaII GGWCC 2 cut(s) 269, 371
BanI GGYRCC 1 cut(s) 137
BauI CACGAG 1 cut(s) 291
BbrPI CACGTG 2 cut(s) 167, 326
BbvI GCAGC 1 cut(s) 86
BccI CCATC 2 cut(s) 20, 101
BceAI ACGGC 2 cut(s) 297, 327
BciT130I CCWGG 2 cut(s) 228, 273
BfaI CTAG 1 cut(s) 282
BisI GCNGC 1 cut(s) 75
BlpI GCTNAGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 228, 273
Bme18I GGWCC 2 cut(s) 269, 371
BmgT120I GGNCC 3 cut(s) 269, 275, 371
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 2 cut(s) 228, 273
Bpu1102I GCTNAGC 1 cut(s) 34
BsaAI YACGTR 2 cut(s) 167, 326
BsaBI GATNNNNATC 1 cut(s) 432
BsaHI GRCGYC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 313, 343
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 2 cut(s) 228, 273
BseDI CCNNGG 2 cut(s) 313, 343
BseGI GGATG 2 cut(s) 12, 112
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 2 cut(s) 48, 366
BseXI GCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 3 cut(s) 276, 312, 342
BshNI GGYRCC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 227
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 3 cut(s) 276, 312, 342
Bsp143I GATC 2 cut(s) 123, 300
Bsp1720I GCTNAGC 1 cut(s) 34
BspACI CCGC 1 cut(s) 257
BspANI GGCC 3 cut(s) 276, 312, 342
BspCNI CTCAG 2 cut(s) 47, 367
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 313, 343
BssMI GATC 2 cut(s) 123, 300
BssNI GRCGYC 1 cut(s) 218
BssSI CACGAG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 2 cut(s) 228, 273
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 218
BstBAI YACGTR 2 cut(s) 167, 326
BstC8I GCNNGC 2 cut(s) 31, 255
BstDEI CTNAG 3 cut(s) 34, 375, 456
BstDSI CCRYGG 2 cut(s) 313, 343
BstF5I GGATG 2 cut(s) 12, 112
BstKTI GATC 2 cut(s) 126, 303
BstMBI GATC 2 cut(s) 123, 300
BstMWI GCNNNNNNNGC 3 cut(s) 35, 74, 254
BstNI CCWGG 2 cut(s) 228, 273
BstSCI CCNGG 2 cut(s) 226, 271
BstV1I GCAGC 1 cut(s) 86
BsuRI GGCC 3 cut(s) 276, 312, 342
BtgI CCRYGG 2 cut(s) 313, 343
BtsCI GGATG 2 cut(s) 12, 112
Cac8I GCNNGC 2 cut(s) 31, 255
Cfr13I GGNCC 3 cut(s) 269, 275, 371
CseI GACGC 2 cut(s) 74, 226
CsiI ACCWGGT 1 cut(s) 226
Csp6I GTAC 2 cut(s) 9, 185
CviAII CATG 4 cut(s) 233, 362, 437, 448
CviJI RGCY 9 cut(s) 33, 38, 115, 243, 276, 312, 342, 432, 446
CviKI_1 RGCY 9 cut(s) 33, 38, 115, 243, 276, 312, 342, 432, 446
CviQI GTAC 2 cut(s) 9, 185
DdeI CTNAG 3 cut(s) 34, 375, 456
DpnI GATC 2 cut(s) 125, 302
DpnII GATC 2 cut(s) 123, 300
EaeI YGGCCR 2 cut(s) 310, 340
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 269, 371
Eco57I CTGAAG 1 cut(s) 60
Eco72I CACGTG 2 cut(s) 167, 326
EcoO109I RGGNCCY 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 318
EcoRII CCWGG 2 cut(s) 226, 271
FaeI CATG 4 cut(s) 236, 365, 440, 451
FaiI YATR 8 cut(s) 51, 90, 119, 234, 246, 363, 438, 449
FatI CATG 4 cut(s) 232, 361, 436, 447
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 282
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 3 cut(s) 276, 312, 342
HgaI GACGC 2 cut(s) 74, 226
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 4 cut(s) 236, 365, 440, 451
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 394
Hpy188III TCNNGA 3 cut(s) 19, 127, 304
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 2 cut(s) 166, 325
HpyCH4V TGCA 5 cut(s) 29, 74, 164, 440, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 74, 254
HpyF3I CTNAG 3 cut(s) 34, 375, 456
HpySE526I ACGT 2 cut(s) 166, 325
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 4 cut(s) 236, 365, 440, 451
Kzo9I GATC 2 cut(s) 123, 300
Lsp1109I GCAGC 1 cut(s) 86
MabI ACCWGGT 1 cut(s) 226
MaeI CTAG 1 cut(s) 282
MaeII ACGT 2 cut(s) 166, 325
MaeIII GTNAC 2 cut(s) 62, 175
MalI GATC 2 cut(s) 125, 302
MboI GATC 2 cut(s) 123, 300
MboII GAAGA 5 cut(s) 69, 133, 204, 211, 394
MluCI AATT 2 cut(s) 156, 318
MnlI CCTC 5 cut(s) 26, 139, 195, 290, 372
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 228, 273
Mva1269I GAATGC 1 cut(s) 156
MvaI CCWGG 2 cut(s) 228, 273
MwoI GCNNNNNNNGC 3 cut(s) 35, 74, 254
NdeII GATC 2 cut(s) 123, 300
NlaIII CATG 4 cut(s) 236, 365, 440, 451
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 2 cut(s) 62, 175
PctI GAATGC 1 cut(s) 156
PflFI GACNNNGTC 1 cut(s) 228
PkrI GCNGC 1 cut(s) 76
PmaCI CACGTG 2 cut(s) 167, 326
PmlI CACGTG 2 cut(s) 167, 326
Ppu21I YACGTR 2 cut(s) 167, 326
PpuMI RGGWCCY 1 cut(s) 371
Psp5II RGGWCCY 1 cut(s) 371
Psp6I CCWGG 2 cut(s) 226, 271
PspCI CACGTG 2 cut(s) 167, 326
PspGI CCWGG 2 cut(s) 226, 271
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 3 cut(s) 269, 275, 371
PspPPI RGGWCCY 1 cut(s) 371
PsyI GACNNNGTC 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 2 cut(s) 10, 186
RsaNI GTAC 2 cut(s) 9, 185
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 123, 300
Sau96I GGNCC 3 cut(s) 269, 275, 371
ScrFI CCNGG 2 cut(s) 228, 273
SetI ASST 7 cut(s) 40, 169, 229, 328, 376, 391, 434
SexAI ACCWGGT 1 cut(s) 226
SinI GGWCC 2 cut(s) 269, 371
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 2 cut(s) 156, 318
SsiI CCGC 1 cut(s) 257
SspI AATATT 1 cut(s) 25
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 226, 271
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 2 cut(s) 169, 328
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 156, 318
TatI WGTACW 1 cut(s) 184
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 2 cut(s) 62, 175
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 2 cut(s) 62, 175
TspDTI ATGAA 2 cut(s) 134, 423
Tth111I GACNNNGTC 1 cut(s) 228
VpaK11BI GGWCC 2 cut(s) 269, 371
XapI RAATTY 1 cut(s) 318
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.