Rmu_sc0006422.1_g000024

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006422.1
OG0003783
Physical Location & Seq
Reverse (-)
90392 .. 92994
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
atgcttggcggggccgcttctttcatctccaacgtgttcgacggcgtttccgtgagctacaatctggtatcgaaagtcgggtcgaattttgcttactcggtccaccgcgacccaattgtggtatccgattgcaggacgactctgtcccacgctcattttgattctggaatcgagggggaaggccagcaggatcgggttctgaagcgggtggcctgcgacccgatttgcccctcggatctgcccgaatccatgtttgatttcggaatggcaattggggtcggcggcgagattacggtggagacagttgagaactggtggagatttgcggcactgtacttctgtgttgcagactacagagctccttctagtcctgcaggctactcctgcaaaaggcctgaaaatgttatggtagatgatttcgtatactcgggcctaggcattgctggtgacacctcaaacattgcaagaggtgcaattaccccagggtgcgataatgaggttcctggtttgaatggccttggcatttcaatggctcgtatagacttggcacccggtgggatcggaacacgtacggtgtatctgcaaactatgaagagtggtgatatgtttgttatccctcaagcgttaatgcatttctttgtgaatattggaggtgctaaaccagtccttgcatttgctagctacagtagtgcaacgctacatattcagggtgtggacaatgcactatttggaagcaaatttcccactcaattgatagctaacactactttccttgacatttctgagataaggaaactgaaggctgtctttggtggcactaatttaggcatcgatctcttcacgatgttagtgttagtgcgagtctttgttccctattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

292

Amino Acids

31.27

Weight (kDa)

5.18

Isoelectric Point (pI)

33.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 191 - 263 3.4e-09 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 142
AccB1I GGYRCC 1 cut(s) 547
AccI GTMKAC 1 cut(s) 423
AccII CGCG 1 cut(s) 108
AciI CCGC 6 cut(s) 9, 15, 106, 205, 282, 326
AclWI GGATC 3 cut(s) 198, 243, 566
AcsI RAATTY 2 cut(s) 85, 737
AcuI CTGAAG 2 cut(s) 221, 818
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 2 cut(s) 335, 571
AfiI CCNNNNNNNGG 3 cut(s) 118, 132, 390
AflIII ACRYGT 2 cut(s) 33, 566
AgsI TTSAA 2 cut(s) 511, 528
AjnI CCWGG 2 cut(s) 481, 502
AluBI AGCT 4 cut(s) 57, 359, 681, 758
AluI AGCT 4 cut(s) 57, 359, 681, 758
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 3 cut(s) 198, 243, 566
Ama87I CYCGRG 1 cut(s) 427
AoxI GGCC 6 cut(s) 12, 181, 210, 392, 430, 514
ApoI RAATTY 2 cut(s) 85, 737
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AspA2I CCTAGG 1 cut(s) 433
AspS9I GGNCC 3 cut(s) 12, 100, 430
AsuC2I CCSGG 1 cut(s) 552
AsuHPI GGTGA 2 cut(s) 458, 611
AsuNHI GCTAGC 1 cut(s) 677
AvaI CYCGRG 1 cut(s) 427
AvaII GGWCC 1 cut(s) 100
AvrII CCTAGG 1 cut(s) 433
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 361
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 483, 504
BciVI GTATCC 1 cut(s) 133
BcnI CCSGG 1 cut(s) 552
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 3 cut(s) 366, 434, 678
BfmI CTRYAG 3 cut(s) 352, 372, 682
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 3 cut(s) 15, 283, 327
BlnI CCTAGG 1 cut(s) 433
BlsI GCNGC 3 cut(s) 16, 284, 328
Bme1390I CCNGG 3 cut(s) 483, 504, 552
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 427
BmgT120I GGNCC 3 cut(s) 12, 100, 430
BmiI GGNNCC 3 cut(s) 13, 501, 549
BmrFI CCNGG 3 cut(s) 483, 504, 552
BmsI GCATC 1 cut(s) 837
BmtI GCTAGC 1 cut(s) 681
BpuEI CTTGAG 1 cut(s) 603
BpuMI CCSGG 1 cut(s) 552
Bsa29I ATCGAT 1 cut(s) 831
BsaAI YACGTR 1 cut(s) 569
BsaJI CCNNGG 5 cut(s) 231, 433, 481, 482, 517
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 132, 390
Bse1I ACTGG 2 cut(s) 317, 662
Bse3DI GCAATG 2 cut(s) 438, 459
BseBI CCWGG 2 cut(s) 483, 504
BseCI ATCGAT 1 cut(s) 831
BseDI CCNNGG 5 cut(s) 231, 433, 481, 482, 517
BseLI CCNNNNNNNGG 3 cut(s) 118, 132, 390
BseMI GCAATG 2 cut(s) 438, 459
BseMII CTCAG 1 cut(s) 774
BseNI ACTGG 2 cut(s) 317, 662
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 6 cut(s) 14, 183, 212, 394, 432, 516
BshNI GGYRCC 1 cut(s) 547
BshVI ATCGAT 1 cut(s) 831
BsiHKAI GWGCWC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 427
BsiSI CCGG 1 cut(s) 552
BsiWI CGTACG 1 cut(s) 569
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 3 cut(s) 118, 132, 390
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 6 cut(s) 14, 183, 212, 394, 432, 516
BsoBI CYCGRG 1 cut(s) 427
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 4 cut(s) 190, 235, 558, 832
BspACI CCGC 6 cut(s) 9, 15, 106, 205, 282, 326
BspANI GGCC 6 cut(s) 14, 183, 212, 394, 432, 516
BspCNI CTCAG 1 cut(s) 775
BspDI ATCGAT 1 cut(s) 831
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 3 cut(s) 13, 501, 549
BspMAI CTGCAG 1 cut(s) 376
BspOI GCTAGC 1 cut(s) 681
BspPI GGATC 3 cut(s) 198, 243, 566
BspT107I GGYRCC 1 cut(s) 547
BsrDI GCAATG 2 cut(s) 438, 459
BsrI ACTGG 2 cut(s) 317, 662
BssECI CCNNGG 5 cut(s) 231, 433, 481, 482, 517
BssMI GATC 4 cut(s) 190, 235, 558, 832
BssNAI GTATAC 1 cut(s) 424
BssT1I CCWWGG 2 cut(s) 433, 517
Bst1107I GTATAC 1 cut(s) 424
Bst2UI CCWGG 2 cut(s) 483, 504
Bst4CI ACNGT 5 cut(s) 295, 304, 333, 574, 686
Bst6I CTCTTC 2 cut(s) 587, 842
BstAPI GCANNNNNTGC 1 cut(s) 470
BstBAI YACGTR 1 cut(s) 569
BstC8I GCNNGC 4 cut(s) 185, 214, 376, 679
BstDEI CTNAG 1 cut(s) 783
BstENI CCTNNNNNAGG 1 cut(s) 388
BstFNI CGCG 1 cut(s) 108
BstKTI GATC 4 cut(s) 193, 238, 561, 835
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 4 cut(s) 190, 235, 558, 832
BstMWI GCNNNNNNNGC 2 cut(s) 384, 470
BstNI CCWGG 2 cut(s) 483, 504
BstSCI CCNGG 3 cut(s) 481, 502, 550
BstSFI CTRYAG 3 cut(s) 352, 372, 682
BstUI CGCG 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BstZ17I GTATAC 1 cut(s) 424
Bsu15I ATCGAT 1 cut(s) 831
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 6 cut(s) 14, 183, 212, 394, 432, 516
BsuTUI ATCGAT 1 cut(s) 831
BtsIMutI CAGTG 1 cut(s) 329
Cac8I GCNNGC 4 cut(s) 185, 214, 376, 679
Cfr13I GGNCC 3 cut(s) 12, 100, 430
ClaI ATCGAT 1 cut(s) 831
Csp6I GTAC 2 cut(s) 334, 570
CviAII CATG 1 cut(s) 250
CviQI GTAC 2 cut(s) 334, 570
DdeI CTNAG 1 cut(s) 783
DpnI GATC 4 cut(s) 192, 237, 560, 834
DpnII GATC 4 cut(s) 190, 235, 558, 832
DraIII CACNNNGTG 1 cut(s) 554
DrdI GACNNNNNNGTC 1 cut(s) 142
DseDI GACNNNNNNGTC 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 587, 842
EarI CTCTTC 2 cut(s) 587, 842
Ecl136II GAGCTC 1 cut(s) 359
Eco130I CCWWGG 2 cut(s) 433, 517
Eco147I AGGCCT 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 359
Eco57I CTGAAG 2 cut(s) 221, 818
Eco88I CYCGRG 1 cut(s) 427
EcoICRI GAGCTC 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 388
EcoRII CCWGG 2 cut(s) 481, 502
EcoT14I CCWWGG 2 cut(s) 433, 517
EcoT22I ATGCAT 1 cut(s) 633
EcoT38I GRGCYC 1 cut(s) 361
ErhI CCWWGG 2 cut(s) 433, 517
FaeI CATG 1 cut(s) 253
FaiI YATR 7 cut(s) 251, 407, 424, 539, 590, 605, 702
FalI AAGNNNNNCTT 2 cut(s) 791, 823
FaqI GGGAC 1 cut(s) 130
FatI CATG 1 cut(s) 249
FauI CCCGC 2 cut(s) 2, 198
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 3 cut(s) 15, 283, 327
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 3 cut(s) 15, 283, 327
FspBI CTAG 3 cut(s) 366, 434, 678
GluI GCNGC 3 cut(s) 15, 283, 327
HaeIII GGCC 6 cut(s) 14, 183, 212, 394, 432, 516
HapII CCGG 1 cut(s) 552
Hin1II CATG 1 cut(s) 253
HinfI GANTC 5 cut(s) 139, 161, 168, 245, 861
HpaII CCGG 1 cut(s) 552
HphI GGTGA 2 cut(s) 458, 611
Hpy166II GTNNAC 3 cut(s) 103, 424, 715
Hpy188I TCNGA 6 cut(s) 127, 201, 235, 263, 563, 784
Hpy188III TCNNGA 2 cut(s) 165, 841
Hpy8I GTNNAC 3 cut(s) 103, 424, 715
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 3 cut(s) 173, 372, 793
HpyCH4III ACNGT 5 cut(s) 295, 304, 333, 574, 686
HpyCH4IV ACGT 2 cut(s) 33, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 384, 470
HpyF3I CTNAG 1 cut(s) 783
HpySE526I ACGT 2 cut(s) 33, 568
Hsp92II CATG 1 cut(s) 253
Kzo9I GATC 4 cut(s) 190, 235, 558, 832
LmnI GCTCC 1 cut(s) 364
LweI GCATC 1 cut(s) 837
MaeI CTAG 3 cut(s) 366, 434, 678
MaeII ACGT 2 cut(s) 33, 568
MaeIII GTNAC 1 cut(s) 446
MalI GATC 4 cut(s) 192, 237, 560, 834
MboI GATC 4 cut(s) 190, 235, 558, 832
MboII GAAGA 2 cut(s) 604, 829
MfeI CAATTG 3 cut(s) 114, 270, 749
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 7 cut(s) 85, 114, 270, 474, 737, 749, 820
MlyI GAGTC 2 cut(s) 133, 870
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 7 cut(s) 166, 241, 461, 463, 490, 627, 644
Mph1103I ATGCAT 1 cut(s) 633
MseI TTAA 1 cut(s) 626
MslI CAYNNNNRTG 1 cut(s) 527
MspI CCGG 1 cut(s) 552
MspR9I CCNGG 3 cut(s) 483, 504, 552
MunI CAATTG 3 cut(s) 114, 270, 749
MvaI CCWGG 2 cut(s) 483, 504
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 384, 470
NciI CCSGG 1 cut(s) 552
NdeII GATC 4 cut(s) 190, 235, 558, 832
NheI GCTAGC 1 cut(s) 677
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 3 cut(s) 13, 501, 549
NmuCI GTSAC 1 cut(s) 446
NsiI ATGCAT 1 cut(s) 633
PasI CCCWGGG 1 cut(s) 482
PceI AGGCCT 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 3 cut(s) 161, 168, 245
Pfl23II CGTACG 1 cut(s) 569
PflFI GACNNNGTC 1 cut(s) 142
PkrI GCNGC 3 cut(s) 16, 284, 328
PleI GAGTC 2 cut(s) 133, 869
PpsI GAGTC 2 cut(s) 133, 869
Ppu21I YACGTR 1 cut(s) 569
Psp124BI GAGCTC 1 cut(s) 361
Psp6I CCWGG 2 cut(s) 481, 502
PspGI CCWGG 2 cut(s) 481, 502
PspLI CGTACG 1 cut(s) 569
PspN4I GGNNCC 3 cut(s) 13, 501, 549
PspPI GGNCC 3 cut(s) 12, 100, 430
PstI CTGCAG 1 cut(s) 376
PsuI RGATCY 1 cut(s) 235
PsyI GACNNNGTC 1 cut(s) 142
RsaI GTAC 2 cut(s) 335, 571
RsaNI GTAC 2 cut(s) 334, 570
RseI CAYNNNNRTG 1 cut(s) 527
SacI GAGCTC 1 cut(s) 361
SaqAI TTAA 1 cut(s) 626
SatI GCNGC 3 cut(s) 15, 283, 327
Sau3AI GATC 4 cut(s) 190, 235, 558, 832
Sau96I GGNCC 3 cut(s) 12, 100, 430
SbfI CCTGCAGG 1 cut(s) 376
SchI GAGTC 2 cut(s) 133, 870
ScrFI CCNGG 3 cut(s) 483, 504, 552
SdaI CCTGCAGG 1 cut(s) 376
SduI GDGCHC 1 cut(s) 361
SfaNI GCATC 1 cut(s) 837
SfcI CTRYAG 3 cut(s) 352, 372, 682
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 618
SmoI CTYRAG 1 cut(s) 618
Sse8387I CCTGCAGG 1 cut(s) 376
Sse9I AATT 7 cut(s) 85, 114, 270, 474, 737, 749, 820
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 6 cut(s) 9, 15, 106, 205, 282, 326
SspI AATATT 1 cut(s) 646
SspMI CTAG 3 cut(s) 366, 434, 678
SstI GAGCTC 1 cut(s) 361
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 3 cut(s) 481, 502, 550
StyI CCWWGG 2 cut(s) 433, 517
TaaI ACNGT 5 cut(s) 295, 304, 333, 574, 686
TaiI ACGT 2 cut(s) 36, 571
TaqI TCGA 5 cut(s) 39, 71, 83, 171, 831
TaqII GACCGA 1 cut(s) 88
TasI AATT 7 cut(s) 85, 114, 270, 474, 737, 749, 820
TatI WGTACW 1 cut(s) 333
TauI GCSGC 3 cut(s) 17, 285, 329
TfiI GAWTC 3 cut(s) 161, 168, 245
Tru1I TTAA 1 cut(s) 626
Tru9I TTAA 1 cut(s) 626
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 1 cut(s) 446
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 13, 605
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 1 cut(s) 336
Tth111I GACNNNGTC 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 100
XagI CCTNNNNNAGG 1 cut(s) 388
XapI RAATTY 2 cut(s) 85, 737
XmaJI CCTAGG 1 cut(s) 433
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 3 cut(s) 366, 434, 678
Zsp2I ATGCAT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.