Rmu_sc0006492.1_g000006

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006492.1
OG0005403
Physical Location & Seq
Forward (+)
21407 .. 25086
3680 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 837 bp
atggcgcacaagctttcaaacgaggctgttctggagcagctcaggaatggatttgctcagttcgagctcgtctcctcccctcttctctcaatttcaacgtccaattctcaggcaaacgccacgccgtttctcggagactacagccaccggttcttcgctagaattggaccgccactaggcagaggatcttcggccatgaggaaagtcgaacgctattccgttcagagagttaccggtgatggacgctgtctatttcgtgcactggtaaaagggatggcagcaaataaagggtcacctcttagcccaagggaagagagagacactgcagatgagctacggatggctgtgaaagaggttatatgcgaaaatgaggaagaacgcccccagtatgaagcagctatagtggcaattactgtcgatgaatccttaaaacgttactgccagcgaatccaaagacctgatttctggggaggagagtcggagctgctggtgctctcaaaattgtgtagacagccaatcatagtctatattccagagcatgagcacacaaatggtggaaggggttctggtttcattcccattgcagaatatggaagcgagtttagtaaaggagacgacgtcgttcctgctgcacaatgtactcatttgagcttttctgcttcagtagtcactccggcgccgtcagaggctgttcttgagcagcttaagaatggatttgctcagtttgagctcgtctcctaccccgttctctctatttcaacttccatttctcaggcgaacattccggcatctctcggacactatagccaccggttctttgccagaactggactgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

278

Amino Acids

30.58

Weight (kDa)

6.4

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 79 - 184 3.8e-12 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 621
AccB1I GGYRCC 1 cut(s) 676
AccI GTMKAC 1 cut(s) 508
AciI CCGC 1 cut(s) 170
AclI AACGTT 1 cut(s) 433
AclWI GGATC 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 645
AcyI GRCGYC 2 cut(s) 618, 677
AfaI GTAC 1 cut(s) 640
AfiI CCNNNNNNNGG 2 cut(s) 131, 176
AflII CTTAAG 1 cut(s) 704
AgeI ACCGGT 3 cut(s) 147, 233, 810
AgsI TTSAA 3 cut(s) 18, 96, 759
AluBI AGCT 9 cut(s) 13, 40, 67, 334, 398, 484, 651, 703, 730
AluI AGCT 9 cut(s) 13, 40, 67, 334, 398, 484, 651, 703, 730
Alw21I GWGCWC 5 cut(s) 69, 262, 495, 546, 732
Alw26I GTCTC 5 cut(s) 76, 129, 312, 606, 739
Alw44I GTGCAC 1 cut(s) 258
AlwI GGATC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 689
AoxI GGCC 1 cut(s) 192
ApaLI GTGCAC 1 cut(s) 258
ApeKI GCWGC 6 cut(s) 37, 278, 395, 484, 629, 700
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AsiGI ACCGGT 3 cut(s) 147, 233, 810
Asp700I GAANNNNTTC 1 cut(s) 562
AspLEI GCGC 2 cut(s) 7, 679
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 248, 285
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 676
BanII GRGCYC 2 cut(s) 69, 732
Bbv12I GWGCWC 5 cut(s) 69, 262, 495, 546, 732
BbvI GCAGC 6 cut(s) 49, 290, 407, 471, 616, 712
BccI CCATC 3 cut(s) 233, 268, 334
BceAI ACGGC 2 cut(s) 109, 664
BcoDI GTCTC 5 cut(s) 76, 129, 312, 606, 739
BfaI CTAG 2 cut(s) 159, 176
BfmI CTRYAG 4 cut(s) 139, 324, 399, 802
BfoI RGCGCY 1 cut(s) 680
BfrI CTTAAG 1 cut(s) 704
BisI GCNGC 6 cut(s) 38, 279, 396, 485, 630, 701
BlsI GCNGC 6 cut(s) 39, 280, 397, 486, 631, 702
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 678
BmrI ACTGGG 1 cut(s) 379
BmsI GCATC 1 cut(s) 797
BmuI ACTGGG 1 cut(s) 379
BplI GAGNNNNNCTC 4 cut(s) 56, 88, 719, 751
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 716
BsaHI GRCGYC 2 cut(s) 618, 677
BsaJI CCNNGG 1 cut(s) 305
BsaWI WCCGGW 3 cut(s) 147, 233, 810
BsaXI ACNNNNNCTCC 2 cut(s) 603, 633
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 176
Bse118I RCCGGY 3 cut(s) 147, 233, 810
Bse1I ACTGG 3 cut(s) 267, 385, 832
Bse3DI GCAATG 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 2 cut(s) 279, 345
BseLI CCNNNNNNNGG 2 cut(s) 131, 176
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 5 cut(s) 55, 71, 122, 734, 785
BseNI ACTGG 3 cut(s) 267, 385, 832
BseRI GAGGAG 2 cut(s) 64, 486
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 6 cut(s) 49, 290, 407, 471, 616, 712
BsgI GTGCAG 1 cut(s) 615
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 676
BshTI ACCGGT 3 cut(s) 147, 233, 810
BsiHKAI GWGCWC 5 cut(s) 69, 262, 495, 546, 732
BsiSI CCGG 5 cut(s) 148, 234, 674, 785, 811
BslI CCNNNNNNNGG 2 cut(s) 131, 176
BsmAI GTCTC 5 cut(s) 76, 129, 312, 606, 739
BsmBI CGTCTC 3 cut(s) 76, 606, 739
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 5 cut(s) 69, 262, 495, 546, 732
Bsp143I GATC 1 cut(s) 185
BspACI CCGC 1 cut(s) 170
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 5 cut(s) 54, 70, 121, 733, 784
BspLI GGNNCC 1 cut(s) 678
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 1 cut(s) 193
BspT107I GGYRCC 1 cut(s) 676
BspTI CTTAAG 1 cut(s) 704
BsrDI GCAATG 1 cut(s) 579
BsrFI RCCGGY 3 cut(s) 147, 233, 810
BsrI ACTGG 3 cut(s) 267, 385, 832
BssAI RCCGGY 3 cut(s) 147, 233, 810
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 1 cut(s) 185
BssNI GRCGYC 2 cut(s) 618, 677
BssT1I CCWWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 415, 834
Bst6I CTCTTC 2 cut(s) 87, 306
BstACI GRCGYC 2 cut(s) 618, 677
BstAFI CTTAAG 1 cut(s) 704
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 6 cut(s) 41, 57, 108, 299, 720, 771
BstEII GGTNACC 1 cut(s) 291
BstF5I GGATG 2 cut(s) 279, 345
BstH2I RGCGCY 1 cut(s) 680
BstHHI GCGC 2 cut(s) 7, 679
BstKTI GATC 1 cut(s) 188
BstMAI GTCTC 5 cut(s) 76, 129, 312, 606, 739
BstMBI GATC 1 cut(s) 185
BstMWI GCNNNNNNNGC 2 cut(s) 404, 490
BstPI GGTNACC 1 cut(s) 291
BstSFI CTRYAG 4 cut(s) 139, 324, 399, 802
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 6 cut(s) 49, 290, 407, 471, 616, 712
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 2 cut(s) 279, 345
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 2 cut(s) 260, 321
Cac8I GCNNGC 1 cut(s) 443
CaiI CAGNNNCTG 1 cut(s) 689
CfoI GCGC 2 cut(s) 7, 679
Cfr10I RCCGGY 3 cut(s) 147, 233, 810
Cfr13I GGNCC 1 cut(s) 167
CseI GACGC 1 cut(s) 252
Csp6I GTAC 1 cut(s) 639
CspAI ACCGGT 3 cut(s) 147, 233, 810
CviAII CATG 2 cut(s) 196, 539
CviQI GTAC 1 cut(s) 639
DdeI CTNAG 6 cut(s) 41, 57, 108, 299, 720, 771
DinI GGCGCC 1 cut(s) 678
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 87, 306
EarI CTCTTC 2 cut(s) 87, 306
Ecl136II GAGCTC 2 cut(s) 67, 730
Eco130I CCWWGG 1 cut(s) 305
Eco24I GRGCYC 2 cut(s) 69, 732
Eco47I GGWCC 1 cut(s) 167
Eco53kI GAGCTC 2 cut(s) 67, 730
Eco57I CTGAAG 1 cut(s) 645
Eco91I GGTNACC 1 cut(s) 291
EcoICRI GAGCTC 2 cut(s) 67, 730
EcoO65I GGTNACC 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 305
EcoT38I GRGCYC 2 cut(s) 69, 732
EgeI GGCGCC 1 cut(s) 678
EheI GGCGCC 1 cut(s) 678
ErhI CCWWGG 1 cut(s) 305
Esp3I CGTCTC 3 cut(s) 76, 606, 739
FaeI CATG 2 cut(s) 199, 542
FatI CATG 2 cut(s) 195, 538
FblI GTMKAC 1 cut(s) 508
Fnu4HI GCNGC 6 cut(s) 38, 279, 396, 485, 630, 701
FokI GGATG 2 cut(s) 286, 352
FriOI GRGCYC 2 cut(s) 69, 732
Fsp4HI GCNGC 6 cut(s) 38, 279, 396, 485, 630, 701
FspBI CTAG 2 cut(s) 159, 176
GlaI GCGC 2 cut(s) 6, 678
GluI GCNGC 6 cut(s) 38, 279, 396, 485, 630, 701
GsuI CTGGAG 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 680
HaeIII GGCC 1 cut(s) 194
HapII CCGG 5 cut(s) 148, 234, 674, 785, 811
HgaI GACGC 1 cut(s) 252
HhaI GCGC 2 cut(s) 7, 679
Hin1I GRCGYC 2 cut(s) 618, 677
Hin1II CATG 2 cut(s) 199, 542
Hin6I GCGC 2 cut(s) 5, 677
HinP1I GCGC 2 cut(s) 5, 677
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 422, 447, 476
HpaII CCGG 5 cut(s) 148, 234, 674, 785, 811
HphI GGTGA 2 cut(s) 248, 285
Hpy166II GTNNAC 2 cut(s) 260, 509
Hpy188I TCNGA 5 cut(s) 134, 225, 481, 685, 797
Hpy188III TCNNGA 4 cut(s) 32, 43, 533, 695
Hpy8I GTNNAC 2 cut(s) 260, 509
Hpy99I CGWCG 2 cut(s) 620, 623
HpyAV CCTTC 1 cut(s) 552
HpyCH4III ACNGT 2 cut(s) 415, 834
HpyCH4IV ACGT 3 cut(s) 98, 433, 618
HpyCH4V TGCA 4 cut(s) 260, 326, 584, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 490
HpyF3I CTNAG 6 cut(s) 41, 57, 108, 299, 720, 771
HpySE526I ACGT 3 cut(s) 98, 433, 618
Hsp92I GRCGYC 2 cut(s) 618, 677
Hsp92II CATG 2 cut(s) 199, 542
HspAI GCGC 2 cut(s) 5, 677
KasI GGCGCC 1 cut(s) 676
Kzo9I GATC 1 cut(s) 185
LmnI GCTCC 2 cut(s) 34, 481
Lsp1109I GCAGC 6 cut(s) 49, 290, 407, 471, 616, 712
LweI GCATC 1 cut(s) 797
MaeI CTAG 2 cut(s) 159, 176
MaeII ACGT 3 cut(s) 98, 433, 618
MaeIII GTNAC 4 cut(s) 229, 291, 434, 667
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 5 cut(s) 74, 145, 180, 323, 386
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 5 cut(s) 69, 262, 495, 546, 732
MluCI AATT 5 cut(s) 90, 103, 162, 408, 500
Mly113I GGCGCC 1 cut(s) 677
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 562
MseI TTAA 2 cut(s) 428, 705
MslI CAYNNNNRTG 1 cut(s) 549
MspCI CTTAAG 1 cut(s) 704
MspI CCGG 5 cut(s) 148, 234, 674, 785, 811
MwoI GCNNNNNNNGC 2 cut(s) 404, 490
NarI GGCGCC 1 cut(s) 677
NdeII GATC 1 cut(s) 185
NlaIII CATG 2 cut(s) 199, 542
NlaIV GGNNCC 1 cut(s) 678
NmuCI GTSAC 2 cut(s) 291, 667
PdmI GAANNNNTTC 1 cut(s) 562
PfeI GAWTC 2 cut(s) 422, 447
PflFI GACNNNGTC 2 cut(s) 246, 617
PinAI ACCGGT 3 cut(s) 147, 233, 810
PkrI GCNGC 6 cut(s) 39, 280, 397, 486, 631, 702
PleI GAGTC 1 cut(s) 484
PluTI GGCGCC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 484
Psp124BI GAGCTC 2 cut(s) 69, 732
Psp1406I AACGTT 1 cut(s) 433
PspEI GGTNACC 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 678
PspPI GGNCC 1 cut(s) 167
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 689
PsuI RGATCY 1 cut(s) 185
PsyI GACNNNGTC 2 cut(s) 246, 617
RsaI GTAC 1 cut(s) 640
RsaNI GTAC 1 cut(s) 639
RseI CAYNNNNRTG 1 cut(s) 549
SacI GAGCTC 2 cut(s) 69, 732
SaqAI TTAA 2 cut(s) 428, 705
SatI GCNGC 6 cut(s) 38, 279, 396, 485, 630, 701
Sau3AI GATC 1 cut(s) 185
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 1 cut(s) 485
SduI GDGCHC 5 cut(s) 69, 262, 495, 546, 732
SfaNI GCATC 1 cut(s) 797
SfcI CTRYAG 4 cut(s) 139, 324, 399, 802
SfoI GGCGCC 1 cut(s) 678
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 549
SmlI CTYRAG 2 cut(s) 695, 704
SmoI CTYRAG 2 cut(s) 695, 704
Sse9I AATT 5 cut(s) 90, 103, 162, 408, 500
SsiI CCGC 1 cut(s) 170
SspDI GGCGCC 1 cut(s) 676
SspMI CTAG 2 cut(s) 159, 176
SstI GAGCTC 2 cut(s) 69, 732
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 2 cut(s) 415, 834
TaiI ACGT 3 cut(s) 101, 436, 621
TaqI TCGA 3 cut(s) 63, 207, 417
TasI AATT 5 cut(s) 90, 103, 162, 408, 500
TatI WGTACW 1 cut(s) 638
TfiI GAWTC 2 cut(s) 422, 447
Tru1I TTAA 2 cut(s) 428, 705
Tru9I TTAA 2 cut(s) 428, 705
TscAI CASTG 2 cut(s) 267, 328
TseFI GTSAC 2 cut(s) 291, 667
TseI GCWGC 6 cut(s) 37, 278, 395, 484, 629, 700
Tsp45I GTSAC 2 cut(s) 291, 667
TspDTI ATGAA 3 cut(s) 405, 435, 562
TspGWI ACGGA 2 cut(s) 208, 352
TspRI CASTG 2 cut(s) 267, 328
Tth111I GACNNNGTC 2 cut(s) 246, 617
Vha464I CTTAAG 1 cut(s) 704
VneI GTGCAC 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 508
XmnI GAANNNNTTC 1 cut(s) 562
XspI CTAG 2 cut(s) 159, 176
ZraI GACGTC 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.