Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017888.1

Orthogroup ID

OG0006047

Physical Location & Seq

Genomic Coordinates Reverse (-)

6414 .. 6989

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017888.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atggagaagatagttccaaagcttttcttcatagctctgttcatgttcataccattactagggcactgtagcagcatcgaagaaaatagagaatttgaccaatggtttcagaagctcgacaactcaaaacccaagctgacccgattccacttctactttcacgacatcgtttcaggctatggccagacatcattcgtagtggttccaccacccaagatcatcaagcgatcgaccaccttgttcggacaagtcaacatgtttgacaacccactaaccaagggacccgaactcacgtccgagcttgtaggcagggctcaggggctatacagtttcgcgtcccaagaagagctctgtctacttatggccatgaccattgttttcaccagcggcaaacacaacggtagcggtgtcactattttggggcgcaacgcagtgtttcaatcccggcgagagtttccaattgtcggcggaactggcgatttccggttggcccgtggatttgcgtcagtctccagctattttgttaatgctactcttggtattctggaatataatcttatggttatacattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

191

Amino Acids

21.56

Weight (kDa)

8.91

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006047)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01660 FvH4_2g01680 FvH4_7g23270
malus_domestica	MD05G1117600.v1.1 MD10G1120700.v1.1
prunus_persica	Prupe.8G162200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244551
rosa_laevigata	RLG00000015345 RLG00000015348 RLG00000015349
rosa_multiflora	Rmu_sc0003679.1_g000008 Rmu_sc0017888.1_g000002
rosa_roxburghii	Rroxscaffold_7G00215750 Rroxscaffold_7G00215760
rosa_rugosa	Rorug05G0509300 Rorug05G0509400
rosa_samantha	Rh6AG025000 Rh6AG025100 Rh6CG017500 Rh6CG017600 Rh6CG018100 Rh6CG018200 Rh6DG018500 Rh6DG018600 Rh6DG019200 Rh6DG019300
rosa_wichuraiana	Rw6G002040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	1 cut(s)	335
AciI	CCGC	3 cut(s)	387, 405, 468
AcoI	YGGCCR	2 cut(s)	181, 363
AcsI	RAATTY	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	59, 464
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	1 cut(s)	440
AjiI	CACGTC	1 cut(s)	294
AluBI	AGCT	7 cut(s)	22, 35, 115, 136, 301, 349, 516
AluI	AGCT	7 cut(s)	22, 35, 115, 136, 301, 349, 516
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	514
AoxI	GGCC	3 cut(s)	181, 363, 489
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	2 cut(s)	281, 490
AsuC2I	CCSGG	1 cut(s)	445
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	66
BalI	TGGCCA	2 cut(s)	183, 365
BanII	GRGCYC	2 cut(s)	316, 351
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	514
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	67
BisI	GCNGC	2 cut(s)	73, 388
BlsI	GCNGC	2 cut(s)	74, 389
Bme1390I	CCNGG	1 cut(s)	445
Bme18I	GGWCC	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	294
BmgT120I	GGNCC	2 cut(s)	281, 490
BmiI	GGNNCC	3 cut(s)	204, 282, 283
BmrFI	CCNGG	1 cut(s)	445
BmsI	GCATC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	496
Bpu10I	CCTNAGC	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	445
BsaJI	CCNNGG	2 cut(s)	276, 493
BsaWI	WCCGGW	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 464
Bse1I	ACTGG	1 cut(s)	478
BseDI	CCNNGG	2 cut(s)	276, 493
BseLI	CCNNNNNNNGG	2 cut(s)	59, 464
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	478
BseSI	GKGCMC	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	335
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	3 cut(s)	183, 365, 491
BsiEI	CGRYCG	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	445, 484
BslFI	GGGAC	2 cut(s)	294, 322
BslI	CCNNNNNNNGG	2 cut(s)	59, 464
BsmAI	GTCTC	1 cut(s)	514
BsmFI	GGGAC	2 cut(s)	294, 322
BsnI	GGCC	3 cut(s)	183, 365, 491
Bsp1286I	GDGCHC	3 cut(s)	66, 316, 351
Bsp143I	GATC	2 cut(s)	216, 227
BspACI	CCGC	3 cut(s)	387, 405, 468
BspANI	GGCC	3 cut(s)	183, 365, 491
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	3 cut(s)	204, 282, 283
BspQI	GCTCTTC	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	2 cut(s)	276, 493
BssMI	GATC	2 cut(s)	216, 227
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	68, 329, 401
Bst6I	CTCTTC	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	2 cut(s)	219, 230
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	2 cut(s)	216, 227
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	443
BstSFI	CTRYAG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	66
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	183, 365, 491
BtgI	CCRYGG	1 cut(s)	493
BtrI	CACGTC	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	2 cut(s)	64, 438
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	2 cut(s)	281, 490
CseI	GACGC	2 cut(s)	324, 492
CviAII	CATG	3 cut(s)	43, 256, 367
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	2 cut(s)	218, 229
DpnII	GATC	2 cut(s)	216, 227
EaeI	YGGCCR	2 cut(s)	181, 363
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	2 cut(s)	316, 351
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	349
EcoO109I	RGGNCCY	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	316, 351
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	3 cut(s)	46, 259, 370
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	2 cut(s)	294, 322
FatI	CATG	3 cut(s)	42, 255, 366
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	73, 388
FriOI	GRGCYC	2 cut(s)	316, 351
Fsp4HI	GCNGC	2 cut(s)	73, 388
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	2 cut(s)	73, 388
GsuI	CTGGAG	1 cut(s)	496
HaeIII	GGCC	3 cut(s)	183, 365, 491
HapII	CCGG	2 cut(s)	445, 484
HgaI	GACGC	2 cut(s)	324, 492
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	3 cut(s)	46, 259, 370
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	1 cut(s)	144
HpaII	CCGG	2 cut(s)	445, 484
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	253, 356
Hpy188I	TCNGA	3 cut(s)	111, 245, 298
Hpy188III	TCNNGA	2 cut(s)	161, 545
Hpy8I	GTNNAC	2 cut(s)	253, 356
HpyCH4III	ACNGT	3 cut(s)	68, 329, 401
HpyCH4IV	ACGT	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	474
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	3 cut(s)	46, 259, 370
HspAI	GCGC	1 cut(s)	424
KflI	GGGWCCC	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	216, 227
LguI	GCTCTTC	1 cut(s)	339
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	218, 229
MboI	GATC	2 cut(s)	216, 227
MboII	GAAGA	4 cut(s)	19, 19, 92, 356
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	3 cut(s)	66, 316, 351
MlsI	TGGCCA	2 cut(s)	183, 365
MluCI	AATT	2 cut(s)	92, 459
MluNI	TGGCCA	2 cut(s)	183, 365
Mox20I	TGGCCA	2 cut(s)	183, 365
MscI	TGGCCA	2 cut(s)	183, 365
MseI	TTAA	1 cut(s)	525
Msp20I	TGGCCA	2 cut(s)	183, 365
MspA1I	CMGCKG	1 cut(s)	387
MspI	CCGG	2 cut(s)	445, 484
MspR9I	CCNGG	1 cut(s)	445
MunI	CAATTG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	474
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	2 cut(s)	216, 227
NlaIII	CATG	3 cut(s)	46, 259, 370
NlaIV	GGNNCC	3 cut(s)	204, 282, 283
NmuCI	GTSAC	1 cut(s)	409
NspI	RCATGY	1 cut(s)	259
PciI	ACATGT	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	74, 389
Ple19I	CGATCG	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	281
PscI	ACATGT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	281
PspN4I	GGNNCC	3 cut(s)	204, 282, 283
PspPI	GGNCC	2 cut(s)	281, 490
PspPPI	RGGWCCY	1 cut(s)	281
PvuI	CGATCG	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	2 cut(s)	73, 388
Sau3AI	GATC	2 cut(s)	216, 227
Sau96I	GGNCC	2 cut(s)	281, 490
ScrFI	CCNGG	1 cut(s)	445
SduI	GDGCHC	3 cut(s)	66, 316, 351
SetI	ASST	9 cut(s)	24, 37, 117, 138, 239, 296, 303, 351, 518
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	281
Sse9I	AATT	2 cut(s)	92, 459
SsiI	CCGC	3 cut(s)	387, 405, 468
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	443
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	68, 329, 401
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	3 cut(s)	78, 117, 230
TasI	AATT	2 cut(s)	92, 459
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	2 cut(s)	71, 438
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	72
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	3 cut(s)	19, 31, 37
TspRI	CASTG	2 cut(s)	71, 438
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.