Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019541.1

Orthogroup ID

OG0002725

Physical Location & Seq

Genomic Coordinates Forward (+)

335 .. 2661

Gene Structure 2327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019541.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgattgtggggcctacaaaagcactattcatggacgaaatatcaaccggtctagatagctccaccacatttcaaatagtgaagtgcttgcagcaaatcgtgcacatcactgaagctacgatcttcatgtcgctactccaacctgctcctgagacgtttgatctcttcgatgatatcatccttttatcggagggtcaaattgtctaccagggaccgcgtgagaacatagtagggttctttgagagctgcggatttcgatgccccgagcgaaagggaactgctgatttcttgcaagaggttacctctagaaaagaccaagagcaatattgggcagatagaagcaagccatacagatacatatcagtgactgaattctcaaaccgatttaaacgcttccatgttggcatgaggcttgaaaacgagctctcaatcccttttgataagtcacgaggccacaaagcagctctagtattcacaagatattcagtatccaaaatggaacttctaaaggcctgttgggacaaggaatggctactcataaagaggaactcttttgtctacatttttaagaccgtccaaataattataggggcgttgataacctcgactgtgtttttgaagacccaaatgcacaccagaaatgaagatgatggagcagtatatcttggtgcactattatttaccatgatcattaacacgttcaatggttttgctgagctctcgatgaccattgcaagactacctgtattttacaagcatagagaccttcttttccaccctgcttggactttcactctcccaactatcctgctcactattcctatatccattgttgaatccacagtttggatggtcataacatattacaccattggttttgcacctgaagctagcaggtttttcaagcaactattgctgatatttctgatccaacaaatggctgctgggatcttcaggcttattgctggagtctgcaggaccatgatcatagcaaacactggtggggctctcactttgctcatggttttcatgcttggaggtttcatactacctaaaggcgaaattccaaagtggtggcagtggggttactgggtttcacctatgacctatggtttcaatgctattgctgtaaatgaaatgttttctcccaggtggatgaacaaatgggtatgttatggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

393

Amino Acids

45.26

Weight (kDa)

8.77

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15210 AT1G59870 AT3G16340 AT3G16340
fragaria_vesca	FvH4_6g32310 FvH4_6g32310
malus_domestica	MD09G1203500.v1.1 MD09G1204000.v1.1 MD09G1204200.v1.1 MD09G1204300.v1.1 MD17G1184700.v1.1
prunus_persica	Prupe.3G059800_v2.0.a1 Prupe.3G059800_v2.0.a1 Prupe.3G059800_v2.0.a1 Prupe.3G059800_v2.0.a1 Prupe.3G059900_v2.0.a1 Prupe.3G060000_v2.0.a1 Prupe.3G060000_v2.0.a1
pyrus_communis	pycom09g12060 pycom09g12080 pycom09g12130 pycom17g19420
rosa_chinensis	RchiOBHm_Chr2g0140401
rosa_laevigata	RLG00000019862
rosa_multiflora	Rmu_sc0008211.1_g000001 Rmu_sc0010411.1_g000005 Rmu_sc0019541.1_g000001 Rmu_sc0019542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104910
rosa_rugosa	Rorug02G0361800 Rorug02G0361900 Rorug02G0362000 Rorug02G0362100 Rorug02G0362100
rosa_samantha	Rh2AG413100 Rh2BG423600 Rh2CG399300 Rh2DG432500
rosa_wichuraiana	Rw2G033870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	151, 885
AccB7I	CCANNNNNTGG	2 cut(s)	846, 937
AccI	GTMKAC	2 cut(s)	204, 558
AccII	CGCG	1 cut(s)	217
AciI	CCGC	2 cut(s)	215, 249
AclWI	GGATC	2 cut(s)	922, 956
AcsI	RAATTY	2 cut(s)	371, 1062
AcuI	CTGAAG	3 cut(s)	132, 906, 937
AfiI	CCNNNNNNNGG	3 cut(s)	187, 846, 937
AflIII	ACRYGT	1 cut(s)	696
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	7 cut(s)	74, 416, 619, 703, 836, 904, 1117
AjnI	CCWGG	2 cut(s)	207, 1148
AluBI	AGCT	7 cut(s)	60, 116, 246, 424, 464, 718, 890
AluI	AGCT	7 cut(s)	60, 116, 246, 424, 464, 718, 890
Alw21I	GWGCWC	4 cut(s)	105, 426, 673, 720
Alw26I	GTCTC	2 cut(s)	146, 756
Alw44I	GTGCAC	2 cut(s)	101, 669
AlwI	GGATC	2 cut(s)	922, 956
AlwNI	CAGNNNCTG	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	3 cut(s)	11, 451, 510
ApaLI	GTGCAC	2 cut(s)	101, 669
ApeKI	GCWGC	4 cut(s)	91, 246, 461, 941
ApoI	RAATTY	2 cut(s)	371, 1062
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AsiGI	ACCGGT	1 cut(s)	47
AspS9I	GGNCC	3 cut(s)	11, 212, 978
AsuHPI	GGTGA	1 cut(s)	1089
AsuNHI	GCTAGC	1 cut(s)	890
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	2 cut(s)	212, 978
BaeGI	GKGCMC	2 cut(s)	105, 673
BanII	GRGCYC	3 cut(s)	426, 720, 1009
BauI	CACGAG	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	626
Bbv12I	GWGCWC	4 cut(s)	105, 426, 673, 720
BbvI	GCAGC	4 cut(s)	103, 233, 473, 928
BccI	CCATC	2 cut(s)	644, 844
BciT130I	CCWGG	2 cut(s)	209, 1150
BciVI	GTATCC	1 cut(s)	499
BclI	TGATCA	2 cut(s)	687, 984
BcoDI	GTCTC	2 cut(s)	146, 756
BfaI	CTAG	4 cut(s)	53, 306, 467, 891
BfmI	CTRYAG	1 cut(s)	973
BfuAI	ACCTGC	2 cut(s)	151, 885
BfuI	GTATCC	1 cut(s)	499
BisI	GCNGC	4 cut(s)	92, 247, 462, 942
BlpI	GCTNAGC	1 cut(s)	714
BlsI	GCNGC	4 cut(s)	93, 248, 463, 943
Bme1390I	CCNGG	2 cut(s)	209, 1150
Bme18I	GGWCC	2 cut(s)	212, 978
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	3 cut(s)	11, 212, 978
BmiI	GGNNCC	2 cut(s)	12, 213
BmrFI	CCNGG	2 cut(s)	209, 1150
BmrI	ACTGGG	1 cut(s)	1099
BmsI	GCATC	1 cut(s)	248
BmtI	GCTAGC	1 cut(s)	894
BmuI	ACTGGG	1 cut(s)	1099
BpiI	GAAGAC	1 cut(s)	626
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	1 cut(s)	987
Bpu1102I	GCTNAGC	1 cut(s)	714
BsaBI	GATNNNNATC	1 cut(s)	358
BsaI	GGTCTC	1 cut(s)	756
BsaJI	CCNNGG	2 cut(s)	208, 1148
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 846, 937
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	1003, 1094
Bse3DI	GCAATG	1 cut(s)	729
Bse8I	GATNNNNATC	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	209, 1150
BseDI	CCNNGG	2 cut(s)	208, 1148
BseGI	GGATG	3 cut(s)	177, 855, 1161
BseJI	GATNNNNATC	1 cut(s)	358
BseLI	CCNNNNNNNGG	3 cut(s)	187, 846, 937
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	2 cut(s)	141, 705
BseNI	ACTGG	2 cut(s)	1003, 1094
BseSI	GKGCMC	2 cut(s)	105, 673
BseXI	GCAGC	4 cut(s)	103, 233, 473, 928
BseYI	CCCAGC	1 cut(s)	944
Bsh1236I	CGCG	1 cut(s)	217
BshFI	GGCC	3 cut(s)	13, 453, 512
BshTI	ACCGGT	1 cut(s)	47
BsiHKAI	GWGCWC	4 cut(s)	105, 426, 673, 720
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	225, 533
BslI	CCNNNNNNNGG	3 cut(s)	187, 846, 937
BsmAI	GTCTC	2 cut(s)	146, 756
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	225, 533
BsnI	GGCC	3 cut(s)	13, 453, 512
Bso31I	GGTCTC	1 cut(s)	756
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	5 cut(s)	105, 426, 673, 720, 1009
Bsp143I	GATC	6 cut(s)	120, 160, 687, 927, 948, 984
Bsp1720I	GCTNAGC	1 cut(s)	714
BspACI	CCGC	2 cut(s)	215, 249
BspANI	GGCC	3 cut(s)	13, 453, 512
BspCNI	CTCAG	2 cut(s)	142, 706
BspFNI	CGCG	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	12, 213
BspMAI	CTGCAG	1 cut(s)	977
BspMI	ACCTGC	2 cut(s)	151, 885
BspOI	GCTAGC	1 cut(s)	894
BspPI	GGATC	2 cut(s)	922, 956
BspTNI	GGTCTC	1 cut(s)	756
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	1003, 1094
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	208, 1148
BssMI	GATC	6 cut(s)	120, 160, 687, 927, 948, 984
BssSI	CACGAG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	2 cut(s)	209, 1150
Bst4CI	ACNGT	3 cut(s)	574, 610, 844
Bst6I	CTCTTC	1 cut(s)	170
BstAPI	GCANNNNNTGC	2 cut(s)	100, 913
BstC8I	GCNNGC	3 cut(s)	89, 344, 892
BstDEI	CTNAG	2 cut(s)	150, 714
BstEII	GGTNACC	1 cut(s)	298
BstF5I	GGATG	3 cut(s)	177, 855, 1161
BstFNI	CGCG	1 cut(s)	217
BstKTI	GATC	6 cut(s)	123, 163, 690, 930, 951, 987
BstMAI	GTCTC	2 cut(s)	146, 756
BstMBI	GATC	6 cut(s)	120, 160, 687, 927, 948, 984
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 887, 913
BstNI	CCWGG	2 cut(s)	209, 1150
BstPI	GGTNACC	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	207, 1148
BstSFI	CTRYAG	1 cut(s)	973
BstSLI	GKGCMC	2 cut(s)	105, 673
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	4 cut(s)	103, 233, 473, 928
BstV2I	GAAGAC	1 cut(s)	626
BstX2I	RGATCY	1 cut(s)	948
BstXI	CCANNNNNNTGG	1 cut(s)	1074
BstYI	RGATCY	1 cut(s)	948
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	3 cut(s)	13, 453, 512
BtsCI	GGATG	3 cut(s)	177, 855, 1161
BtsI	GCAGTG	1 cut(s)	1085
BtsIMutI	CAGTG	4 cut(s)	108, 369, 996, 1085
BveI	ACCTGC	2 cut(s)	151, 885
Cac8I	GCNNGC	3 cut(s)	89, 344, 892
CaiI	CAGNNNCTG	1 cut(s)	368
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	3 cut(s)	11, 212, 978
CspAI	ACCGGT	1 cut(s)	47
CspCI	CAANNNNNGTGG	2 cut(s)	764, 799
CviAII	CATG	8 cut(s)	31, 127, 398, 406, 685, 982, 1021, 1030
DdeI	CTNAG	2 cut(s)	150, 714
DpnI	GATC	6 cut(s)	122, 162, 689, 929, 950, 986
DpnII	GATC	6 cut(s)	120, 160, 687, 927, 948, 984
DraI	TTTAAA	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	2 cut(s)	424, 718
Eco147I	AGGCCT	1 cut(s)	512
Eco24I	GRGCYC	3 cut(s)	426, 720, 1009
Eco31I	GGTCTC	1 cut(s)	756
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	212, 978
Eco53kI	GAGCTC	2 cut(s)	424, 718
Eco57I	CTGAAG	3 cut(s)	132, 906, 937
Eco88I	CYCGRG	1 cut(s)	263
Eco91I	GGTNACC	1 cut(s)	298
EcoICRI	GAGCTC	2 cut(s)	424, 718
EcoO109I	RGGNCCY	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	207, 1148
EcoRV	GATATC	1 cut(s)	175
EcoT38I	GRGCYC	3 cut(s)	426, 720, 1009
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	8 cut(s)	34, 130, 401, 409, 688, 985, 1024, 1033
FaqI	GGGAC	2 cut(s)	225, 533
FatI	CATG	8 cut(s)	30, 126, 397, 405, 684, 981, 1020, 1029
FbaI	TGATCA	2 cut(s)	687, 984
FblI	GTMKAC	2 cut(s)	204, 558
Fnu4HI	GCNGC	4 cut(s)	92, 247, 462, 942
FokI	GGATG	3 cut(s)	164, 862, 1168
FriOI	GRGCYC	3 cut(s)	426, 720, 1009
Fsp4HI	GCNGC	4 cut(s)	92, 247, 462, 942
FspBI	CTAG	4 cut(s)	53, 306, 467, 891
GluI	GCNGC	4 cut(s)	92, 247, 462, 942
GsaI	CCCAGC	1 cut(s)	948
GsuI	CTGGAG	1 cut(s)	987
HaeIII	GGCC	3 cut(s)	13, 453, 512
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	8 cut(s)	34, 130, 401, 409, 688, 985, 1024, 1033
HinfI	GANTC	2 cut(s)	836, 969
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	1089
Hpy166II	GTNNAC	4 cut(s)	103, 205, 559, 671
Hpy188I	TCNGA	2 cut(s)	190, 927
Hpy188III	TCNNGA	5 cut(s)	53, 149, 306, 447, 721
Hpy8I	GTNNAC	4 cut(s)	103, 205, 559, 671
HpyAV	CCTTC	1 cut(s)	776
HpyCH4III	ACNGT	3 cut(s)	574, 610, 844
HpyCH4IV	ACGT	2 cut(s)	155, 698
HpyCH4V	TGCA	8 cut(s)	91, 103, 292, 631, 671, 734, 881, 975
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 887, 913
HpyF3I	CTNAG	2 cut(s)	150, 714
HpySE526I	ACGT	2 cut(s)	155, 698
Hsp92II	CATG	8 cut(s)	34, 130, 401, 409, 688, 985, 1024, 1033
Ksp22I	TGATCA	2 cut(s)	687, 984
Kzo9I	GATC	6 cut(s)	120, 160, 687, 927, 948, 984
LmnI	GCTCC	3 cut(s)	65, 151, 653
Lsp1109I	GCAGC	4 cut(s)	103, 233, 473, 928
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	4 cut(s)	53, 306, 467, 891
MaeII	ACGT	2 cut(s)	155, 698
MaeIII	GTNAC	4 cut(s)	298, 364, 444, 1085
MalI	GATC	6 cut(s)	122, 162, 689, 929, 950, 986
MboI	GATC	6 cut(s)	120, 160, 687, 927, 948, 984
MboII	GAAGA	5 cut(s)	115, 157, 631, 656, 943
MflI	RGATCY	1 cut(s)	948
MhlI	GDGCHC	5 cut(s)	105, 426, 673, 720, 1009
MluCI	AATT	4 cut(s)	198, 371, 582, 1062
MlyI	GAGTC	1 cut(s)	978
MmeI	TCCRAC	2 cut(s)	163, 955
MnlI	CCTC	8 cut(s)	184, 289, 313, 402, 443, 537, 613, 1031
MseI	TTAA	4 cut(s)	387, 567, 693, 1180
MslI	CAYNNNNRTG	1 cut(s)	362
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	209, 1150
MvaI	CCWGG	2 cut(s)	209, 1150
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	3 cut(s)	100, 887, 913
NdeII	GATC	6 cut(s)	120, 160, 687, 927, 948, 984
NheI	GCTAGC	1 cut(s)	890
NlaIII	CATG	8 cut(s)	34, 130, 401, 409, 688, 985, 1024, 1033
NlaIV	GGNNCC	2 cut(s)	12, 213
NmuCI	GTSAC	2 cut(s)	364, 444
PceI	AGGCCT	1 cut(s)	512
PfeI	GAWTC	1 cut(s)	836
PflMI	CCANNNNNTGG	2 cut(s)	846, 937
PinAI	ACCGGT	1 cut(s)	47
PkrI	GCNGC	4 cut(s)	93, 248, 463, 943
PleI	GAGTC	1 cut(s)	977
PpsI	GAGTC	1 cut(s)	977
Psp124BI	GAGCTC	2 cut(s)	426, 720
Psp6I	CCWGG	2 cut(s)	207, 1148
PspEI	GGTNACC	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	944
PspGI	CCWGG	2 cut(s)	207, 1148
PspN4I	GGNNCC	2 cut(s)	12, 213
PspPI	GGNCC	3 cut(s)	11, 212, 978
PstI	CTGCAG	1 cut(s)	977
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	948
RseI	CAYNNNNRTG	1 cut(s)	362
SacI	GAGCTC	2 cut(s)	426, 720
SaqAI	TTAA	4 cut(s)	387, 567, 693, 1180
SatI	GCNGC	4 cut(s)	92, 247, 462, 942
Sau3AI	GATC	6 cut(s)	120, 160, 687, 927, 948, 984
Sau96I	GGNCC	3 cut(s)	11, 212, 978
SchI	GAGTC	1 cut(s)	978
ScrFI	CCNGG	2 cut(s)	209, 1150
SduI	GDGCHC	5 cut(s)	105, 426, 673, 720, 1009
SfaNI	GCATC	1 cut(s)	248
SfcI	CTRYAG	1 cut(s)	973
SinI	GGWCC	2 cut(s)	212, 978
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	4 cut(s)	198, 371, 582, 1062
SseBI	AGGCCT	1 cut(s)	512
SsiI	CCGC	2 cut(s)	215, 249
SspI	AATATT	1 cut(s)	326
SspMI	CTAG	4 cut(s)	53, 306, 467, 891
SstI	GAGCTC	2 cut(s)	426, 720
StuI	AGGCCT	1 cut(s)	512
StyD4I	CCNGG	2 cut(s)	207, 1148
TaaI	ACNGT	3 cut(s)	574, 610, 844
TaiI	ACGT	2 cut(s)	158, 701
TaqI	TCGA	4 cut(s)	168, 256, 605, 722
TasI	AATT	4 cut(s)	198, 371, 582, 1062
TfiI	GAWTC	1 cut(s)	836
Tru1I	TTAA	4 cut(s)	387, 567, 693, 1180
Tru9I	TTAA	4 cut(s)	387, 567, 693, 1180
TscAI	CASTG	4 cut(s)	115, 369, 1003, 1085
TseFI	GTSAC	2 cut(s)	364, 444
TseI	GCWGC	4 cut(s)	91, 246, 461, 941
Tsp45I	GTSAC	2 cut(s)	364, 444
TspDTI	ATGAA	7 cut(s)	19, 115, 657, 1018, 1033, 1149, 1172
TspRI	CASTG	4 cut(s)	115, 369, 1003, 1085
Van91I	CCANNNNNTGG	2 cut(s)	846, 937
VneI	GTGCAC	2 cut(s)	101, 669
VpaK11BI	GGWCC	2 cut(s)	212, 978
XapI	RAATTY	2 cut(s)	371, 1062
XbaI	TCTAGA	2 cut(s)	52, 305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	847
XmiI	GTMKAC	2 cut(s)	204, 558
XspI	CTAG	4 cut(s)	53, 306, 467, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.