Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019542.1

Orthogroup ID

OG0002725

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1367

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019542.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

gttacctctagaaaagaccaagagcaatattgggcagatagaagcaagccatacagatacatatcagtgactgaattctcaaaccgatttaaacgcttccatgttggcatgaggcttgaaaacgagctctcaatcccttttgataagtcacgaggccacaaagcagctctagtattcacaagatattcagtatccaaaatggaacttctaaaggcctgttgggacaaggaatggctactcataaagaggaactcttttgtctacatttttaagaccgtccaaataattataggggcgttgataacctcgactgtgtttttgaagacccaaatgcacaccagaaatgaagatgatggagcagtatatcttggtgcactattatttaccatgatcattaacacgttcaatggttttgctgagctctcgatgaccattgcaagactacctgtattttacaagcatagagaccttcttttccaccctgcttggactttcactctcccaactatcctgctcactattcctatatccattgttgaatccacagtttggatggtcataacatattacaccattggttttgcacctgaagctagcaggtttttcaagcaactattgctgatatttctgatccaacaaatggctgctgggatcttcaggcttattgctggagtctgcaggaccatgatcatagcaaacactggtggggctctcactttgctcatggttttcatgcttggaggtttcatactacctaaaggtaagtatgaactgaatatcctgtcctctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

264

Amino Acids

30.45

Weight (kDa)

9.77

Isoelectric Point (pI)

29.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15210 AT1G59870 AT3G16340 AT3G16340
fragaria_vesca	FvH4_6g32310 FvH4_6g32310
malus_domestica	MD09G1203500.v1.1 MD09G1204000.v1.1 MD09G1204200.v1.1 MD09G1204300.v1.1 MD17G1184700.v1.1
prunus_persica	Prupe.3G059800_v2.0.a1 Prupe.3G059800_v2.0.a1 Prupe.3G059800_v2.0.a1 Prupe.3G059800_v2.0.a1 Prupe.3G059900_v2.0.a1 Prupe.3G060000_v2.0.a1 Prupe.3G060000_v2.0.a1
pyrus_communis	pycom09g12060 pycom09g12080 pycom09g12130 pycom17g19420
rosa_chinensis	RchiOBHm_Chr2g0140401
rosa_laevigata	RLG00000019862
rosa_multiflora	Rmu_sc0008211.1_g000001 Rmu_sc0010411.1_g000005 Rmu_sc0019541.1_g000001 Rmu_sc0019542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104910
rosa_rugosa	Rorug02G0361800 Rorug02G0361900 Rorug02G0362000 Rorug02G0362100 Rorug02G0362100
rosa_samantha	Rh2AG413100 Rh2BG423600 Rh2CG399300 Rh2DG432500
rosa_wichuraiana	Rw2G033870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	588
AccB7I	CCANNNNNTGG	2 cut(s)	549, 640
AccI	GTMKAC	1 cut(s)	261
AclWI	GGATC	2 cut(s)	625, 659
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	2 cut(s)	609, 640
AfiI	CCNNNNNNNGG	2 cut(s)	549, 640
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	5 cut(s)	119, 322, 406, 539, 607
AloI	GAACNNNNNNTCC	2 cut(s)	762, 794
AluBI	AGCT	4 cut(s)	127, 167, 421, 593
AluI	AGCT	4 cut(s)	127, 167, 421, 593
Alw21I	GWGCWC	3 cut(s)	129, 376, 423
Alw26I	GTCTC	1 cut(s)	459
Alw44I	GTGCAC	1 cut(s)	372
AlwI	GGATC	2 cut(s)	625, 659
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	154, 213
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	164, 644
ApoI	RAATTY	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
AspS9I	GGNCC	1 cut(s)	681
AsuNHI	GCTAGC	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	681
BaeGI	GKGCMC	1 cut(s)	376
BanII	GRGCYC	3 cut(s)	129, 423, 712
BauI	CACGAG	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	3 cut(s)	129, 376, 423
BbvI	GCAGC	2 cut(s)	176, 631
BccI	CCATC	2 cut(s)	347, 547
BciVI	GTATCC	1 cut(s)	202
BclI	TGATCA	2 cut(s)	390, 687
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	3 cut(s)	9, 170, 594
BfmI	CTRYAG	1 cut(s)	676
BfuAI	ACCTGC	1 cut(s)	588
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	165, 645
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	2 cut(s)	166, 646
Bme18I	GGWCC	1 cut(s)	681
BmgT120I	GGNCC	1 cut(s)	681
BmtI	GCTAGC	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	690
Bpu1102I	GCTNAGC	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	549, 640
Bse1I	ACTGG	1 cut(s)	706
Bse3DI	GCAATG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	61
BseGI	GGATG	1 cut(s)	558
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	549, 640
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	706
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	2 cut(s)	176, 631
BseYI	CCCAGC	1 cut(s)	647
BshFI	GGCC	2 cut(s)	156, 215
BsiHKAI	GWGCWC	3 cut(s)	129, 376, 423
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	549, 640
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	156, 215
Bso31I	GGTCTC	1 cut(s)	459
Bsp1286I	GDGCHC	4 cut(s)	129, 376, 423, 712
Bsp143I	GATC	4 cut(s)	390, 630, 651, 687
Bsp1720I	GCTNAGC	1 cut(s)	417
BspANI	GGCC	2 cut(s)	156, 215
BspCNI	CTCAG	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	680
BspMI	ACCTGC	1 cut(s)	588
BspOI	GCTAGC	1 cut(s)	597
BspPI	GGATC	2 cut(s)	625, 659
BspTNI	GGTCTC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	706
BssMI	GATC	4 cut(s)	390, 630, 651, 687
BssSI	CACGAG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	150
Bst4CI	ACNGT	3 cut(s)	277, 313, 547
BstAPI	GCANNNNNTGC	1 cut(s)	616
BstC8I	GCNNGC	2 cut(s)	47, 595
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	558
BstKTI	GATC	4 cut(s)	393, 633, 654, 690
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	4 cut(s)	390, 630, 651, 687
BstMWI	GCNNNNNNNGC	2 cut(s)	590, 616
BstSFI	CTRYAG	1 cut(s)	676
BstSLI	GKGCMC	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	176, 631
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	651
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	156, 215
BtsCI	GGATG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	72, 699
BveI	ACCTGC	1 cut(s)	588
Cac8I	GCNNGC	2 cut(s)	47, 595
CaiI	CAGNNNCTG	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	681
CspCI	CAANNNNNGTGG	2 cut(s)	467, 502
CviAII	CATG	6 cut(s)	101, 109, 388, 685, 724, 733
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	4 cut(s)	392, 632, 653, 689
DpnII	GATC	4 cut(s)	390, 630, 651, 687
DraI	TTTAAA	1 cut(s)	91
Ecl136II	GAGCTC	2 cut(s)	127, 421
Eco147I	AGGCCT	1 cut(s)	215
Eco24I	GRGCYC	3 cut(s)	129, 423, 712
Eco31I	GGTCTC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	681
Eco53kI	GAGCTC	2 cut(s)	127, 421
Eco57I	CTGAAG	2 cut(s)	609, 640
EcoICRI	GAGCTC	2 cut(s)	127, 421
EcoRI	GAATTC	1 cut(s)	74
EcoT38I	GRGCYC	3 cut(s)	129, 423, 712
FaeI	CATG	6 cut(s)	104, 112, 391, 688, 727, 736
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	6 cut(s)	100, 108, 387, 684, 723, 732
FbaI	TGATCA	2 cut(s)	390, 687
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	165, 645
FokI	GGATG	1 cut(s)	565
FriOI	GRGCYC	3 cut(s)	129, 423, 712
Fsp4HI	GCNGC	2 cut(s)	165, 645
FspBI	CTAG	3 cut(s)	9, 170, 594
GluI	GCNGC	2 cut(s)	165, 645
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	2 cut(s)	156, 215
Hin1II	CATG	6 cut(s)	104, 112, 391, 688, 727, 736
HinfI	GANTC	2 cut(s)	539, 672
Hpy166II	GTNNAC	2 cut(s)	262, 374
Hpy188I	TCNGA	1 cut(s)	630
Hpy188III	TCNNGA	3 cut(s)	9, 150, 424
Hpy8I	GTNNAC	2 cut(s)	262, 374
HpyAV	CCTTC	1 cut(s)	479
HpyCH4III	ACNGT	3 cut(s)	277, 313, 547
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	5 cut(s)	334, 374, 437, 584, 678
HpyF10VI	GCNNNNNNNGC	2 cut(s)	590, 616
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	401
Hsp92II	CATG	6 cut(s)	104, 112, 391, 688, 727, 736
Ksp22I	TGATCA	2 cut(s)	390, 687
Kzo9I	GATC	4 cut(s)	390, 630, 651, 687
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	2 cut(s)	176, 631
MaeI	CTAG	3 cut(s)	9, 170, 594
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	2 cut(s)	67, 147
MalI	GATC	4 cut(s)	392, 632, 653, 689
MboI	GATC	4 cut(s)	390, 630, 651, 687
MboII	GAAGA	3 cut(s)	334, 359, 646
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	4 cut(s)	129, 376, 423, 712
MluCI	AATT	2 cut(s)	74, 285
MlyI	GAGTC	1 cut(s)	681
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	6 cut(s)	16, 105, 146, 240, 316, 734
MseI	TTAA	4 cut(s)	90, 270, 396, 793
MslI	CAYNNNNRTG	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	590, 616
NdeII	GATC	4 cut(s)	390, 630, 651, 687
NheI	GCTAGC	1 cut(s)	593
NlaIII	CATG	6 cut(s)	104, 112, 391, 688, 727, 736
NmuCI	GTSAC	2 cut(s)	67, 147
PceI	AGGCCT	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	539
PflMI	CCANNNNNTGG	2 cut(s)	549, 640
PkrI	GCNGC	2 cut(s)	166, 646
PleI	GAGTC	1 cut(s)	680
PpsI	GAGTC	1 cut(s)	680
Psp124BI	GAGCTC	2 cut(s)	129, 423
PspFI	CCCAGC	1 cut(s)	647
PspPI	GGNCC	1 cut(s)	681
PstI	CTGCAG	1 cut(s)	680
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	651
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	2 cut(s)	129, 423
SaqAI	TTAA	4 cut(s)	90, 270, 396, 793
SatI	GCNGC	2 cut(s)	165, 645
Sau3AI	GATC	4 cut(s)	390, 630, 651, 687
Sau96I	GGNCC	1 cut(s)	681
SchI	GAGTC	1 cut(s)	681
SduI	GDGCHC	4 cut(s)	129, 376, 423, 712
SfcI	CTRYAG	1 cut(s)	676
SinI	GGWCC	1 cut(s)	681
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	74, 285
SseBI	AGGCCT	1 cut(s)	215
SspI	AATATT	1 cut(s)	29
SspMI	CTAG	3 cut(s)	9, 170, 594
SstI	GAGCTC	2 cut(s)	129, 423
StuI	AGGCCT	1 cut(s)	215
TaaI	ACNGT	3 cut(s)	277, 313, 547
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	2 cut(s)	308, 425
TasI	AATT	2 cut(s)	74, 285
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	4 cut(s)	90, 270, 396, 793
Tru9I	TTAA	4 cut(s)	90, 270, 396, 793
TscAI	CASTG	2 cut(s)	72, 706
TseFI	GTSAC	2 cut(s)	67, 147
TseI	GCWGC	2 cut(s)	164, 644
Tsp45I	GTSAC	2 cut(s)	67, 147
TspDTI	ATGAA	4 cut(s)	360, 721, 736, 783
TspRI	CASTG	2 cut(s)	72, 706
Van91I	CCANNNNNTGG	2 cut(s)	549, 640
VneI	GTGCAC	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	681
XapI	RAATTY	1 cut(s)	74
XbaI	TCTAGA	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	3 cut(s)	9, 170, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.