Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002725

Physical Location & Seq

Genomic Coordinates Reverse (-)

45915935 .. 45922269

Gene Structure 6335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0362100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGGACGCAATGGACTATAGCTCTGATGAAGAATCAGATATCAGTGAATCTGAGATCAGTGACTACAAAGATAAACAGTACGAGCAGTTACGAAGTGGAAAGTTGAAAGTAAAGGGTCCTAATGGCACCCTCAGATGCCCCTTTTGTGCTGGCAAGAAGAAACAAGATTATAAGCACAAGGATCTGCTTCAACATGCTTCCGGGGTGGCTAAAGGTTCTGCTAACAGAAGCACAGTCCAAAAGGCCAACCACCTTGCCTTAGCCCTTTATTTGGAGAAGGAGTTAGCTAGTGAAGCAGATCAAACCCTGCGTCTTGATATGACAAATGAAAATCTGGATGAACTACAATACAAATACAATGAGAATGCACTGTCTTTAAGTAGGATGCTAGAACAAAAAGACAGGCTACATAATGCCTTTGTTGAAGAATCAAAGAGGCTGCAGATGATGTCACAAGATAATGTTTGGAGAATAATAGAAGAGCGAGAGAAGCTGAATGACGAGTTGGATGCTAAGAAAAAGGAACTGGATTCCCTGAGAAAAGAATTAAACAAACGTGAAGCACTAACTGAATGTGAGAGGCAAAAACTTGACGAGGATAAAAAGAAGAACGATGAGAGAAACAAGTTACTTCAATTGGCTTCTGTGGAGCAGAAAAAGGTGGATGAGAGTGTCTTGAGGCTGGTTGAAGAGCTAAAGAGGGAAAAAGAGGATGCCTTGCATAAAATACTTCAGTTAGAAAAGAAATTGAATGACAAACAGAAGGTAGAAATGGAAATTGAAGAATTAAATGGTAAATTAGACGTGATGAAGCATCTTCGGGATGAAGATGATGAAGCAGTTAAAAAGAAGATTGAAGACATGAATCAAGAATTGGGGGAAAAAGCTGAAGAGCTTGAGCATTTGGAATTACTGAATCAAACTCTGATCACCAAAGAGCGCCAGAGCAATGATGAGTTACAAGAAGCTCGTAAAGTGTTAATAGCAGGTTTGTCTGAAATGTTGGCTGGTCAATCTCATATTCGGATTAAAAGAATGGGAGATTTGGATCAAAAGTCCTTCCTCGACACATGCAAGTTAAGATTTCCTCTCGAGGAAGCACAGGTTCAGGCCTTCACTTTATGCTCCCTGTGGCAGGAAAATCTGAAAGATCCAAATTGGCATCCTTTCAAGGTGATAGAGAAAGATGGGAATCATGAGGAAATTATCGACGAGGAGGATGAGAAGCTACAAAATCTGAAGGAAGAGTGGGGAATTAAAATACATGACTGTGTTGTTACAGCTTTGAAAGAGCTTAATGAATACAACTTCAGTGGGAGATATGCTATTTCTGAGCTCTGGAACCAAAAAGAAGGAAGAAAAGCCACATTGAAGGAGGTATTTTCCTTTATCTTGAAGAATATTGAGATACGCAAGCGAAAGAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

476

Amino Acids

55.87

Weight (kDa)

5.44

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-XS	PF03470	46 - 88	3e-19	XS zinc finger domain
XH	PF03469	344 - 474	3.9e-54	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15210 AT1G59870 AT3G16340 AT3G16340
fragaria_vesca	FvH4_6g32310 FvH4_6g32310
malus_domestica	MD09G1203500.v1.1 MD09G1204000.v1.1 MD09G1204200.v1.1 MD09G1204300.v1.1 MD17G1184700.v1.1
prunus_persica	Prupe.3G059800_v2.0.a1 Prupe.3G059800_v2.0.a1 Prupe.3G059800_v2.0.a1 Prupe.3G059800_v2.0.a1 Prupe.3G059900_v2.0.a1 Prupe.3G060000_v2.0.a1 Prupe.3G060000_v2.0.a1
pyrus_communis	pycom09g12060 pycom09g12080 pycom09g12130 pycom17g19420
rosa_chinensis	RchiOBHm_Chr2g0140401
rosa_laevigata	RLG00000019862
rosa_multiflora	Rmu_sc0008211.1_g000001 Rmu_sc0010411.1_g000005 Rmu_sc0019541.1_g000001 Rmu_sc0019542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104910
rosa_rugosa	Rorug02G0361800 Rorug02G0361900 Rorug02G0362000 Rorug02G0362100 Rorug02G0362100
rosa_samantha	Rh2AG413100 Rh2BG423600 Rh2CG399300 Rh2DG432500
rosa_wichuraiana	Rw2G033870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
Acc36I	ACCTGC	1 cut(s)	977
AccB1I	GGYRCC	1 cut(s)	125
AclWI	GGATC	3 cut(s)	189, 1056, 1145
AcuI	CTGAAG	4 cut(s)	716, 909, 1259, 1294
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	271, 1135
AjiI	CACGTC	1 cut(s)	805
AjuI	GAANNNNNNNTTGG	4 cut(s)	488, 520, 857, 889
Alw21I	GWGCWC	1 cut(s)	1338
AlwI	GGATC	3 cut(s)	189, 1056, 1145
Ama87I	CYCGRG	1 cut(s)	1091
AoxI	GGCC	2 cut(s)	243, 1110
ApeKI	GCWGC	1 cut(s)	439
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
AspLEI	GCGC	1 cut(s)	942
AspS9I	GGNCC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	922, 1186
AvaI	CYCGRG	1 cut(s)	1091
AvaII	GGWCC	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	1338
BbsI	GAAGAC	1 cut(s)	864
Bbv12I	GWGCWC	1 cut(s)	1338
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	1 cut(s)	1181
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BclI	TGATCA	1 cut(s)	927
BcnI	CCSGG	1 cut(s)	202
BfaI	CTAG	2 cut(s)	288, 389
BfmI	CTRYAG	2 cut(s)	16, 440
BfoI	RGCGCY	1 cut(s)	943
BfuAI	ACCTGC	1 cut(s)	977
BisI	GCNGC	1 cut(s)	440
BlsI	GCNGC	1 cut(s)	441
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	116
BmeT110I	CYCGRG	1 cut(s)	1091
BmgBI	CACGTC	1 cut(s)	805
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	3 cut(s)	117, 127, 1343
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	6 cut(s)	125, 375, 499, 703, 823, 1171
BpiI	GAAGAC	1 cut(s)	864
Bpu10I	CCTNAGC	1 cut(s)	259
BpuEI	CTTGAG	2 cut(s)	697, 917
BpuMI	CCSGG	1 cut(s)	202
BsaBI	GATNNNNATC	2 cut(s)	1047, 1191
BsaJI	CCNNGG	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 1135
Bse1I	ACTGG	1 cut(s)	531
Bse3DI	GCAATG	2 cut(s)	15, 955
Bse8I	GATNNNNATC	2 cut(s)	1047, 1191
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	8 cut(s)	343, 390, 514, 670, 718, 829, 1162, 1225
BseJI	GATNNNNATC	2 cut(s)	1047, 1191
BseLI	CCNNNNNNNGG	2 cut(s)	271, 1135
BseMI	GCAATG	2 cut(s)	15, 955
BseMII	CTCAG	4 cut(s)	42, 145, 527, 1323
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	1 cut(s)	1229
BseXI	GCAGC	1 cut(s)	426
BshFI	GGCC	2 cut(s)	245, 1112
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	1338
BsiHKCI	CYCGRG	1 cut(s)	1091
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	2 cut(s)	271, 1135
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	245, 1112
BsoBI	CYCGRG	1 cut(s)	1091
Bsp1286I	GDGCHC	1 cut(s)	1338
Bsp143I	GATC	6 cut(s)	54, 181, 298, 927, 1048, 1150
BspANI	GGCC	2 cut(s)	245, 1112
BspCNI	CTCAG	4 cut(s)	43, 144, 528, 1324
BspHI	TCATGA	1 cut(s)	1195
BspLI	GGNNCC	3 cut(s)	117, 127, 1343
BspMAI	CTGCAG	1 cut(s)	444
BspMI	ACCTGC	1 cut(s)	977
BspPI	GGATC	3 cut(s)	189, 1056, 1145
BspQI	GCTCTTC	3 cut(s)	474, 684, 885
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	15, 955
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	6 cut(s)	54, 181, 298, 927, 1048, 1150
Bst4CI	ACNGT	4 cut(s)	78, 235, 372, 1271
Bst6I	CTCTTC	4 cut(s)	474, 684, 885, 1239
BstC8I	GCNNGC	2 cut(s)	151, 1415
BstDEI	CTNAG	6 cut(s)	51, 131, 259, 513, 536, 1332
BstENI	CCTNNNNNAGG	1 cut(s)	1133
BstF5I	GGATG	8 cut(s)	343, 390, 514, 670, 718, 829, 1162, 1225
BstH2I	RGCGCY	1 cut(s)	943
BstHHI	GCGC	1 cut(s)	942
BstKTI	GATC	6 cut(s)	57, 184, 301, 930, 1051, 1153
BstMBI	GATC	6 cut(s)	54, 181, 298, 927, 1048, 1150
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 490
BstNSI	RCATGY	2 cut(s)	197, 1074
BstSCI	CCNGG	1 cut(s)	200
BstSFI	CTRYAG	2 cut(s)	16, 440
BstV1I	GCAGC	1 cut(s)	426
BstV2I	GAAGAC	1 cut(s)	864
BstX2I	RGATCY	2 cut(s)	181, 1150
BstYI	RGATCY	2 cut(s)	181, 1150
BsuRI	GGCC	2 cut(s)	245, 1112
BtrI	CACGTC	1 cut(s)	805
BtsCI	GGATG	8 cut(s)	343, 390, 514, 670, 718, 829, 1162, 1225
BtsIMutI	CAGTG	4 cut(s)	49, 64, 368, 1318
BveI	ACCTGC	1 cut(s)	977
Cac8I	GCNNGC	2 cut(s)	151, 1415
CciI	TCATGA	1 cut(s)	1195
CfoI	GCGC	1 cut(s)	942
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	2 cut(s)	14, 299
Csp6I	GTAC	1 cut(s)	79
CspCI	CAANNNNNGTGG	2 cut(s)	1294, 1329
CviAII	CATG	6 cut(s)	194, 862, 1071, 1196, 1265, 1428
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	6 cut(s)	51, 131, 259, 513, 536, 1332
DpnI	GATC	6 cut(s)	56, 183, 300, 929, 1050, 1152
DpnII	GATC	6 cut(s)	54, 181, 298, 927, 1048, 1150
Eam1104I	CTCTTC	4 cut(s)	474, 684, 885, 1239
EarI	CTCTTC	4 cut(s)	474, 684, 885, 1239
Ecl136II	GAGCTC	1 cut(s)	1336
Eco147I	AGGCCT	1 cut(s)	1112
Eco24I	GRGCYC	1 cut(s)	1338
Eco32I	GATATC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	1336
Eco57I	CTGAAG	4 cut(s)	716, 909, 1259, 1294
Eco88I	CYCGRG	1 cut(s)	1091
EcoICRI	GAGCTC	1 cut(s)	1336
EcoNI	CCTNNNNNAGG	1 cut(s)	1133
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRV	GATATC	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	1338
FaeI	CATG	6 cut(s)	197, 865, 1074, 1199, 1268, 1431
FatI	CATG	6 cut(s)	193, 861, 1070, 1195, 1264, 1427
FbaI	TGATCA	1 cut(s)	927
Fnu4HI	GCNGC	1 cut(s)	440
FokI	GGATG	8 cut(s)	350, 397, 521, 677, 725, 836, 1149, 1232
FriOI	GRGCYC	1 cut(s)	1338
Fsp4HI	GCNGC	1 cut(s)	440
FspBI	CTAG	2 cut(s)	288, 389
GlaI	GCGC	1 cut(s)	941
GluI	GCNGC	1 cut(s)	440
HaeII	RGCGCY	1 cut(s)	943
HaeIII	GGCC	2 cut(s)	245, 1112
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	2 cut(s)	14, 299
HhaI	GCGC	1 cut(s)	942
Hin1II	CATG	6 cut(s)	197, 865, 1074, 1199, 1268, 1431
Hin6I	GCGC	1 cut(s)	940
HinP1I	GCGC	1 cut(s)	940
HinfI	GANTC	7 cut(s)	32, 47, 428, 530, 865, 916, 1192
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	2 cut(s)	922, 1186
Hpy188III	TCNNGA	9 cut(s)	314, 335, 676, 821, 869, 1091, 1196, 1339, 1393
Hpy99I	CGWCG	1 cut(s)	1214
HpyAV	CCTTC	7 cut(s)	271, 757, 1069, 1123, 1234, 1346, 1366
HpyCH4III	ACNGT	4 cut(s)	78, 235, 372, 1271
HpyCH4IV	ACGT	2 cut(s)	556, 804
HpyCH4V	TGCA	4 cut(s)	368, 442, 721, 1074
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 490
HpyF3I	CTNAG	6 cut(s)	51, 131, 259, 513, 536, 1332
HpySE526I	ACGT	2 cut(s)	556, 804
Hsp92II	CATG	6 cut(s)	197, 865, 1074, 1199, 1268, 1431
HspAI	GCGC	1 cut(s)	940
Ksp22I	TGATCA	1 cut(s)	927
Kzo9I	GATC	6 cut(s)	54, 181, 298, 927, 1048, 1150
LguI	GCTCTTC	3 cut(s)	474, 684, 885
LmnI	GCTCC	2 cut(s)	649, 1130
Lsp1109I	GCAGC	1 cut(s)	426
LweI	GCATC	6 cut(s)	125, 375, 499, 703, 823, 1171
MaeI	CTAG	2 cut(s)	288, 389
MaeII	ACGT	2 cut(s)	556, 804
MaeIII	GTNAC	6 cut(s)	59, 87, 450, 627, 957, 1276
MalI	GATC	6 cut(s)	56, 183, 300, 929, 1050, 1152
MboI	GATC	6 cut(s)	54, 181, 298, 927, 1048, 1150
MfeI	CAATTG	1 cut(s)	635
MflI	RGATCY	2 cut(s)	181, 1150
MhlI	GDGCHC	1 cut(s)	1338
MmeI	TCCRAC	1 cut(s)	486
MseI	TTAA	9 cut(s)	377, 548, 788, 843, 980, 1029, 1079, 1257, 1296
MslI	CAYNNNNRTG	1 cut(s)	1269
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	202
MunI	CAATTG	1 cut(s)	635
Mva1269I	GAATGC	1 cut(s)	370
MwoI	GCNNNNNNNGC	2 cut(s)	293, 490
NciI	CCSGG	1 cut(s)	202
NdeII	GATC	6 cut(s)	54, 181, 298, 927, 1048, 1150
NlaIII	CATG	6 cut(s)	197, 865, 1074, 1199, 1268, 1431
NlaIV	GGNNCC	3 cut(s)	117, 127, 1343
NmuCI	GTSAC	2 cut(s)	59, 450
NspI	RCATGY	2 cut(s)	197, 1074
PaeR7I	CTCGAG	1 cut(s)	1091
PagI	TCATGA	1 cut(s)	1195
PceI	AGGCCT	1 cut(s)	1112
PciSI	GCTCTTC	3 cut(s)	474, 684, 885
PctI	GAATGC	1 cut(s)	370
PfeI	GAWTC	7 cut(s)	32, 47, 428, 530, 865, 916, 1192
PkrI	GCNGC	1 cut(s)	441
PpuMI	RGGWCCY	1 cut(s)	116
PsiI	TTATAA	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	1338
Psp5II	RGGWCCY	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	117, 127, 1343
PspPI	GGNCC	1 cut(s)	116
PspPPI	RGGWCCY	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	444
PsuI	RGATCY	2 cut(s)	181, 1150
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	1269
SacI	GAGCTC	1 cut(s)	1338
SapI	GCTCTTC	3 cut(s)	474, 684, 885
SaqAI	TTAA	9 cut(s)	377, 548, 788, 843, 980, 1029, 1079, 1257, 1296
SatI	GCNGC	1 cut(s)	440
Sau3AI	GATC	6 cut(s)	54, 181, 298, 927, 1048, 1150
Sau96I	GGNCC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	1338
SfaNI	GCATC	6 cut(s)	125, 375, 499, 703, 823, 1171
SfcI	CTRYAG	2 cut(s)	16, 440
Sfr274I	CTCGAG	1 cut(s)	1091
SinI	GGWCC	1 cut(s)	116
SlaI	CTCGAG	1 cut(s)	1091
SmiMI	CAYNNNNRTG	1 cut(s)	1269
SmlI	CTYRAG	3 cut(s)	676, 896, 1091
SmoI	CTYRAG	3 cut(s)	676, 896, 1091
SseBI	AGGCCT	1 cut(s)	1112
SspI	AATATT	1 cut(s)	1402
SspMI	CTAG	2 cut(s)	288, 389
SstI	GAGCTC	1 cut(s)	1338
StuI	AGGCCT	1 cut(s)	1112
StyD4I	CCNGG	1 cut(s)	200
TaaI	ACNGT	4 cut(s)	78, 235, 372, 1271
TaiI	ACGT	2 cut(s)	559, 807
TaqI	TCGA	3 cut(s)	1065, 1092, 1209
TfiI	GAWTC	7 cut(s)	32, 47, 428, 530, 865, 916, 1192
Tru1I	TTAA	9 cut(s)	377, 548, 788, 843, 980, 1029, 1079, 1257, 1296
Tru9I	TTAA	9 cut(s)	377, 548, 788, 843, 980, 1029, 1079, 1257, 1296
TscAI	CASTG	4 cut(s)	49, 64, 375, 1318
TseFI	GTSAC	2 cut(s)	59, 450
TseI	GCWGC	1 cut(s)	439
Tsp45I	GTSAC	2 cut(s)	59, 450
TspDTI	ATGAA	8 cut(s)	42, 342, 354, 824, 840, 849, 878, 1314
TspRI	CASTG	4 cut(s)	49, 64, 375, 1318
VpaK11BI	GGWCC	1 cut(s)	116
XagI	CCTNNNNNAGG	1 cut(s)	1133
XceI	RCATGY	2 cut(s)	197, 1074
XhoI	CTCGAG	1 cut(s)	1091
XspI	CTAG	2 cut(s)	288, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.