Rorug02G0361800
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002725
Physical Location & Seq
Reverse (-)
45873789 .. 45875475
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0361800.1

Sequence Viewer

Length: 426 bp
ATGTCAGGTGATGAAGCACCCGCACCAGTTGTAGCTGAAGCACCTGCTCCAGCCCTTGGCGAGCCTATGGATATCATGACAGCTGTGCAGCTTGTGCTGAGAAAATCGCTGGCTCATGGTGGGCTTGTTCGAGGTCTTCATGAAGCTGCAAAGGTTGTTGAGAAGCATGCTGCCCAGCTCTGTGTCCTGGCCGAGGACTGTGACCAGCAAGACTATGTTAAACTAGTCAAAGGTCTCTGTGCTGAGCACAACGTAAACATGTTGACCGTTCCCAATGCCAAGACCCTAGGAGAGTGGGCTGGTTTGTGCAAGATCGACTCTGAGGGCAAGGCTAGGAAGGTTGTTGGTTGCTCATGTGTTGTTGTGAAGGATTTTGGAGAGGATCATGAAGCTCTCCATGTTGTTCAGCAGCATGTCAAGGCCTAA

Protein Analysis

141

Amino Acids

14.95

Weight (kDa)

5.76

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 28 - 121 1.2e-26 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 56
AciI CCGC 1 cut(s) 21
AclWI GGATC 1 cut(s) 390
AcoI YGGCCR 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 57
AfiI CCNNNNNNNGG 2 cut(s) 56, 193
AflIII ACRYGT 1 cut(s) 258
AhlI ACTAGT 1 cut(s) 223
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 6 cut(s) 35, 83, 91, 146, 178, 392
AluI AGCT 6 cut(s) 35, 83, 91, 146, 178, 392
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 1 cut(s) 390
AoxI GGCC 2 cut(s) 189, 420
ApeKI GCWGC 4 cut(s) 88, 146, 170, 409
AspA2I CCTAGG 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 20
AvrII CCTAGG 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 4 cut(s) 100, 133, 157, 421
BciT130I CCWGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 239
BcuI ACTAGT 1 cut(s) 223
BfaI CTAG 3 cut(s) 224, 287, 333
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 4 cut(s) 89, 147, 171, 410
BlnI CCTAGG 1 cut(s) 286
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 4 cut(s) 90, 148, 172, 411
Bme1390I CCNGG 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 55, 192, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 193
Bse1I ACTGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 3 cut(s) 55, 192, 286
BseLI CCNNNNNNNGG 2 cut(s) 56, 193
BseMII CTCAG 3 cut(s) 89, 234, 312
BseNI ACTGG 1 cut(s) 26
BseXI GCAGC 4 cut(s) 100, 133, 157, 421
BseYI CCCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 107
BshFI GGCC 2 cut(s) 191, 422
BsiHKAI GWGCWC 1 cut(s) 249
BslI CCNNNNNNNGG 2 cut(s) 56, 193
BsmAI GTCTC 1 cut(s) 239
BsnI GGCC 2 cut(s) 191, 422
Bso31I GGTCTC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 312, 382
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 1 cut(s) 21
BspANI GGCC 2 cut(s) 191, 422
BspCNI CTCAG 3 cut(s) 90, 235, 313
BspHI TCATGA 3 cut(s) 75, 139, 385
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 1 cut(s) 390
BspTNI GGTCTC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 3 cut(s) 55, 192, 286
BssMI GATC 2 cut(s) 312, 382
BssT1I CCWWGG 2 cut(s) 55, 286
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 200, 268
BstAPI GCANNNNNTGC 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 62, 111, 168
BstDEI CTNAG 3 cut(s) 98, 243, 321
BstENI CCTNNNNNAGG 1 cut(s) 191
BstKTI GATC 2 cut(s) 315, 385
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 2 cut(s) 312, 382
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 3 cut(s) 170, 262, 416
BstSCI CCNGG 1 cut(s) 186
BstV1I GCAGC 4 cut(s) 100, 133, 157, 421
BstV2I GAAGAC 1 cut(s) 128
BsuRI GGCC 2 cut(s) 191, 422
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 3 cut(s) 62, 111, 168
CciI TCATGA 3 cut(s) 75, 139, 385
CviAII CATG 9 cut(s) 76, 116, 140, 167, 259, 354, 386, 398, 413
DdeI CTNAG 3 cut(s) 98, 243, 321
DpnI GATC 2 cut(s) 314, 384
DpnII GATC 2 cut(s) 312, 382
EaeI YGGCCR 1 cut(s) 189
Eco130I CCWWGG 2 cut(s) 55, 286
Eco147I AGGCCT 1 cut(s) 422
Eco31I GGTCTC 1 cut(s) 239
Eco32I GATATC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 186
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 2 cut(s) 55, 286
ErhI CCWWGG 2 cut(s) 55, 286
FaeI CATG 9 cut(s) 79, 119, 143, 170, 262, 357, 389, 401, 416
FatI CATG 9 cut(s) 75, 115, 139, 166, 258, 353, 385, 397, 412
FauI CCCGC 1 cut(s) 28
Fnu4HI GCNGC 4 cut(s) 89, 147, 171, 410
Fsp4HI GCNGC 4 cut(s) 89, 147, 171, 410
FspBI CTAG 3 cut(s) 224, 287, 333
GluI GCNGC 4 cut(s) 89, 147, 171, 410
GsaI CCCAGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 2 cut(s) 191, 422
Hin1II CATG 9 cut(s) 79, 119, 143, 170, 262, 357, 389, 401, 416
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HinfI GANTC 1 cut(s) 317
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 256, 264
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 3 cut(s) 76, 140, 386
Hpy8I GTNNAC 2 cut(s) 256, 264
HpyAV CCTTC 2 cut(s) 331, 361
HpyCH4III ACNGT 2 cut(s) 200, 268
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 88, 149, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 3 cut(s) 98, 243, 321
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 9 cut(s) 79, 119, 143, 170, 262, 357, 389, 401, 416
Kzo9I GATC 2 cut(s) 312, 382
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 9 cut(s) 39, 57, 63, 95, 173, 188, 200, 218, 285
Lsp1109I GCAGC 4 cut(s) 100, 133, 157, 421
MaeI CTAG 3 cut(s) 224, 287, 333
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 314, 384
MboI GATC 2 cut(s) 312, 382
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 249
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 4 cut(s) 125, 187, 316, 373
MseI TTAA 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 2 cut(s) 312, 382
NlaIII CATG 9 cut(s) 79, 119, 143, 170, 262, 357, 389, 401, 416
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 3 cut(s) 170, 262, 416
PaeI GCATGC 1 cut(s) 170
PagI TCATGA 3 cut(s) 75, 139, 385
PaqCI CACCTGC 1 cut(s) 52
PceI AGGCCT 1 cut(s) 422
PciI ACATGT 1 cut(s) 258
PflMI CCANNNNNTGG 1 cut(s) 56
PkrI GCNGC 4 cut(s) 90, 148, 172, 411
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PscI ACATGT 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 1 cut(s) 186
PvuII CAGCTG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 4 cut(s) 89, 147, 171, 410
Sau3AI GATC 2 cut(s) 312, 382
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 249
SpeI ACTAGT 1 cut(s) 223
SphI GCATGC 1 cut(s) 170
SseBI AGGCCT 1 cut(s) 422
SsiI CCGC 1 cut(s) 21
SspMI CTAG 3 cut(s) 224, 287, 333
StuI AGGCCT 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 2 cut(s) 55, 286
TaaI ACNGT 2 cut(s) 200, 268
TaiI ACGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 130, 315
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 4 cut(s) 88, 146, 170, 409
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 4 cut(s) 27, 128, 156, 402
Van91I CCANNNNNTGG 1 cut(s) 56
XagI CCTNNNNNAGG 1 cut(s) 191
XceI RCATGY 3 cut(s) 170, 262, 416
XmaJI CCTAGG 1 cut(s) 286
XspI CTAG 3 cut(s) 224, 287, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.