Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002725

Physical Location & Seq

Genomic Coordinates Reverse (-)

45878585 .. 45879082

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0361900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCAAGAGTTGATCAAAATGTGTTTGTCAATGTGAGTTTGGTCTTAGCAAGTGTAGCACTATTCATGTCGTTTGCAGCAGCTCAAGACTTCGTTGCTTATGAAGTCTATAATGATGCCACAAGCCCTATAAGCGTTGAGGTTGAAGTCATTGATGCCTACCCTCCAATTTCTCCAGAAGACCATGATGCTCTCCCTCCAGAAGCATCACCGGGAGCTTACAAGAAGTTGAACAATTGTGCAAACAAGATTACAGCAGATTATGCCGAAGAGATCTACGATGGTATTTTCGAAGGCAAGCCTCTCACTACAGATTGCTGCAAAGCCCTTGTGCATCTGGGATATGATTGTCACATCCAGTTAGTGAAATTTTTGCTCTCGATCAGTCCAGAACTTAAAGAAAAAGCTTCCGAGATATTGCCTAGGAGTGTGCAGCTTTGGAAAACATGTGCCTTGGTGGTTGACGTTGATCAATCTATTGCTCCTTCTCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

165

Amino Acids

18.05

Weight (kDa)

4.45

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	79 - 150	9.5e-11	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15210 AT1G59870 AT3G16340 AT3G16340
fragaria_vesca	FvH4_6g32310 FvH4_6g32310
malus_domestica	MD09G1203500.v1.1 MD09G1204000.v1.1 MD09G1204200.v1.1 MD09G1204300.v1.1 MD17G1184700.v1.1
prunus_persica	Prupe.3G059800_v2.0.a1 Prupe.3G059800_v2.0.a1 Prupe.3G059800_v2.0.a1 Prupe.3G059800_v2.0.a1 Prupe.3G059900_v2.0.a1 Prupe.3G060000_v2.0.a1 Prupe.3G060000_v2.0.a1
pyrus_communis	pycom09g12060 pycom09g12080 pycom09g12130 pycom17g19420
rosa_chinensis	RchiOBHm_Chr2g0140401
rosa_laevigata	RLG00000019862
rosa_multiflora	Rmu_sc0008211.1_g000001 Rmu_sc0010411.1_g000005 Rmu_sc0019541.1_g000001 Rmu_sc0019542.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104910
rosa_rugosa	Rorug02G0361800 Rorug02G0361900 Rorug02G0362000 Rorug02G0362100 Rorug02G0362100
rosa_samantha	Rh2AG413100 Rh2BG423600 Rh2CG399300 Rh2DG432500
rosa_wichuraiana	Rw2G033870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	446
AgsI	TTSAA	2 cut(s)	146, 232
AluBI	AGCT	4 cut(s)	83, 218, 407, 436
AluI	AGCT	4 cut(s)	83, 218, 407, 436
ApeKI	GCWGC	4 cut(s)	77, 80, 318, 433
ApoI	RAATTY	1 cut(s)	368
AspA2I	CCTAGG	1 cut(s)	422
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	201
AsuII	TTCGAA	1 cut(s)	291
AvrII	CCTAGG	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	89, 92, 305, 445
BccI	CCATC	1 cut(s)	275
BclI	TGATCA	2 cut(s)	13, 469
BcnI	CCSGG	1 cut(s)	213
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	309
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	4 cut(s)	78, 81, 319, 434
BlnI	CCTAGG	1 cut(s)	422
BlsI	GCNGC	4 cut(s)	79, 82, 320, 435
Bme1390I	CCNGG	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	5 cut(s)	106, 145, 178, 215, 343
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	2 cut(s)	159, 183
Bpu14I	TTCGAA	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	422, 453
Bse1I	ACTGG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	422, 453
BseGI	GGATG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	4 cut(s)	89, 92, 305, 445
BsgI	GTGCAG	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	212
Bsp119I	TTCGAA	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	13, 273, 381, 469
BspT104I	TTCGAA	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	422, 453
BssMI	GATC	4 cut(s)	13, 273, 381, 469
BssT1I	CCWWGG	2 cut(s)	422, 453
Bst6I	CTCTTC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	354
BstKTI	GATC	4 cut(s)	16, 276, 384, 472
BstMBI	GATC	4 cut(s)	13, 273, 381, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 132, 263
BstNSI	RCATGY	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	4 cut(s)	89, 92, 305, 445
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	299
CviAII	CATG	3 cut(s)	67, 185, 447
CviJI	RGCY	7 cut(s)	83, 126, 218, 301, 326, 407, 436
CviKI_1	RGCY	7 cut(s)	83, 126, 218, 301, 326, 407, 436
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	4 cut(s)	15, 275, 383, 471
DpnII	GATC	4 cut(s)	13, 273, 381, 469
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	2 cut(s)	422, 453
EcoT14I	CCWWGG	2 cut(s)	422, 453
ErhI	CCWWGG	2 cut(s)	422, 453
FaeI	CATG	3 cut(s)	70, 188, 450
FaiI	YATR	8 cut(s)	68, 102, 111, 131, 186, 264, 345, 448
FatI	CATG	3 cut(s)	66, 184, 446
FbaI	TGATCA	2 cut(s)	13, 469
Fnu4HI	GCNGC	4 cut(s)	78, 81, 319, 434
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	4 cut(s)	78, 81, 319, 434
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	4 cut(s)	78, 81, 319, 434
GsuI	CTGGAG	2 cut(s)	159, 183
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	3 cut(s)	70, 188, 450
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	405
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	201
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	1 cut(s)	412
Hpy188III	TCNNGA	5 cut(s)	86, 176, 200, 379, 389
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	2 cut(s)	287, 495
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	5 cut(s)	77, 242, 321, 334, 433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 132, 263
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	3 cut(s)	70, 188, 450
Ksp22I	TGATCA	2 cut(s)	13, 469
Kzo9I	GATC	4 cut(s)	13, 273, 381, 469
LmnI	GCTCC	2 cut(s)	215, 487
LpnPI	CCDG	6 cut(s)	189, 213, 225, 323, 371, 402
Lsp1109I	GCAGC	4 cut(s)	89, 92, 305, 445
LweI	GCATC	5 cut(s)	106, 145, 178, 215, 343
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	4 cut(s)	15, 275, 383, 471
MboI	GATC	4 cut(s)	13, 273, 381, 469
MboII	GAAGA	2 cut(s)	191, 281
MfeI	CAATTG	1 cut(s)	235
MflI	RGATCY	1 cut(s)	273
MluCI	AATT	3 cut(s)	168, 235, 368
MnlI	CCTC	4 cut(s)	133, 174, 207, 312
MseI	TTAA	1 cut(s)	396
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	213
MunI	CAATTG	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	56, 132, 263
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	4 cut(s)	13, 273, 381, 469
NlaIII	CATG	3 cut(s)	70, 188, 450
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	1 cut(s)	450
NspV	TTCGAA	1 cut(s)	291
PciI	ACATGT	1 cut(s)	446
PkrI	GCNGC	4 cut(s)	79, 82, 320, 435
PscI	ACATGT	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	4 cut(s)	78, 81, 319, 434
Sau3AI	GATC	4 cut(s)	13, 273, 381, 469
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	6 cut(s)	85, 144, 220, 409, 438, 468
SfaNI	GCATC	5 cut(s)	106, 145, 178, 215, 343
SfcI	CTRYAG	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	3 cut(s)	168, 235, 368
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	2 cut(s)	422, 453
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	2 cut(s)	291, 380
TasI	AATT	3 cut(s)	168, 235, 368
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	4 cut(s)	77, 80, 318, 433
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	55, 117
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	1 cut(s)	450
XmaJI	CCTAGG	1 cut(s)	422
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.