Rmu_ssc0000201.1_g000003

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000201.1
OG0003783
Physical Location & Seq
Forward (+)
9229 .. 11579
2351 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 951 bp
atgacactgattcaaattaaaggccaaaaccaaaaccaaaatctcctcacactccctactgcgtctccccaaaaccaaaacctacaaccttcaccgcctacacttcaaatccatcggatccaagacctctgttctacgccgacaccaaattcatcggatccaaaacctagatctctctcctctctccctcttatcttctacacggctacacctataccccaaatccatctctccgacaaccaaactagtagtaaactaaacttgttgctcatggcttctactttggccacttcctttgcttctgccccacccaaagcggggaagagtaattccaatcctccgccgacgacgaggagccctaacaaaagcagtaaagcagcagaagaagaagaagccgttgaagaagtggaagaggatctaccctggattcaagaaaaggccttggacctggtggagttcaccagctctgtcacgcaggccattcctggacccagagttggcaccagctccctcccttggattttggctattcctctcgcttatgccggtctcaattttgtcatcgctgttgtcaagaccgtgaaaaagttctcttcccctcgacataaacgcaagaaactgacaggttttggcatggaggagattttgcgcaagtgcatccgttatactttgaatgaaaagccattcaactcagacatggtttccaatttaattcagctcagaaaagcttctttgtttgatgattctcaggtggctaaaattctaaatgaaatttcaagaagaattgtgcgagacaaaggcccagttgtaatggatatggcaggttatactgaacagggtttcaaaagaaaattagccgttcaagccctatatggaaaggtgttctatctgtcagagggttatggcattgatgataactgtgacatatctattattgatggccattgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

34.83

Weight (kDa)

8.91

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 208 - 299 9.8e-38 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 650
Acc36I ACCTGC 1 cut(s) 812
AccB1I GGYRCC 1 cut(s) 500
AciI CCGC 3 cut(s) 95, 317, 341
AclWI GGATC 5 cut(s) 112, 125, 152, 165, 423
AcoI YGGCCR 2 cut(s) 285, 940
AcsI RAATTY 3 cut(s) 148, 759, 771
AfiI CCNNNNNNNGG 4 cut(s) 317, 318, 497, 516
AgsI TTSAA 9 cut(s) 14, 107, 401, 431, 673, 688, 777, 844, 863
AhlI ACTAGT 1 cut(s) 245
AjnI CCWGG 3 cut(s) 422, 447, 484
AluBI AGCT 4 cut(s) 465, 507, 718, 728
AluI AGCT 4 cut(s) 465, 507, 718, 728
Alw26I GTCTC 3 cut(s) 69, 554, 786
AlwI GGATC 5 cut(s) 112, 125, 152, 165, 423
AoxI GGCC 6 cut(s) 22, 285, 438, 477, 799, 940
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 3 cut(s) 148, 759, 771
Asp700I GAANNNNTTC 2 cut(s) 587, 727
AspLEI GCGC 1 cut(s) 651
AspS9I GGNCC 3 cut(s) 445, 488, 800
AsuHPI GGTGA 2 cut(s) 84, 451
AvaII GGWCC 2 cut(s) 445, 488
BalI TGGCCA 2 cut(s) 287, 942
BamHI GGATCC 2 cut(s) 117, 157
BanI GGYRCC 1 cut(s) 500
BanII GRGCYC 1 cut(s) 359
BarI GAAGNNNNNNTAC 2 cut(s) 402, 434
BbvI GCAGC 1 cut(s) 389
BccI CCATC 3 cut(s) 120, 234, 932
BceAI ACGGC 3 cut(s) 219, 380, 842
BciT130I CCWGG 3 cut(s) 424, 449, 486
BcoDI GTCTC 3 cut(s) 69, 554, 786
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 2 cut(s) 168, 246
BfuAI ACCTGC 1 cut(s) 812
BglII AGATCT 1 cut(s) 170
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 3 cut(s) 424, 449, 486
Bme18I GGWCC 2 cut(s) 445, 488
BmgT120I GGNCC 3 cut(s) 445, 488, 800
BmiI GGNNCC 5 cut(s) 119, 159, 356, 490, 502
BmrFI CCNGG 3 cut(s) 424, 449, 486
BmrI ACTGGG 1 cut(s) 797
BmsI GCATC 1 cut(s) 666
BmuI ACTGGG 1 cut(s) 797
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 3 cut(s) 422, 441, 515
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 4 cut(s) 317, 318, 497, 516
Bse118I RCCGGY 1 cut(s) 545
Bse1I ACTGG 1 cut(s) 803
BseBI CCWGG 3 cut(s) 424, 449, 486
BseDI CCNNGG 3 cut(s) 422, 441, 515
BseGI GGATG 1 cut(s) 657
BseLI CCNNNNNNNGG 4 cut(s) 317, 318, 497, 516
BseMII CTCAG 3 cut(s) 705, 733, 761
BseNI ACTGG 1 cut(s) 803
BseRI GAGGAG 4 cut(s) 35, 169, 367, 653
BseXI GCAGC 1 cut(s) 389
BshFI GGCC 6 cut(s) 24, 287, 440, 479, 801, 942
BshNI GGYRCC 1 cut(s) 500
BsiSI CCGG 1 cut(s) 546
BslI CCNNNNNNNGG 4 cut(s) 317, 318, 497, 516
BsmAI GTCTC 3 cut(s) 69, 554, 786
BsmBI CGTCTC 1 cut(s) 69
BsnI GGCC 6 cut(s) 24, 287, 440, 479, 801, 942
Bso31I GGTCTC 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 359
Bsp143I GATC 4 cut(s) 117, 157, 170, 415
BspACI CCGC 3 cut(s) 95, 317, 341
BspANI GGCC 6 cut(s) 24, 287, 440, 479, 801, 942
BspCNI CTCAG 3 cut(s) 704, 732, 760
BspLI GGNNCC 5 cut(s) 119, 159, 356, 490, 502
BspMI ACCTGC 1 cut(s) 812
BspPI GGATC 5 cut(s) 112, 125, 152, 165, 423
BspT107I GGYRCC 1 cut(s) 500
BspTNI GGTCTC 1 cut(s) 554
BsrFI RCCGGY 1 cut(s) 545
BsrI ACTGG 1 cut(s) 803
BssAI RCCGGY 1 cut(s) 545
BssECI CCNNGG 3 cut(s) 422, 441, 515
BssMI GATC 4 cut(s) 117, 157, 170, 415
BssT1I CCWWGG 2 cut(s) 441, 515
Bst2UI CCWGG 3 cut(s) 424, 449, 486
Bst4CI ACNGT 2 cut(s) 580, 920
Bst6I CTCTTC 3 cut(s) 317, 405, 598
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 3 cut(s) 691, 719, 747
BstF5I GGATG 1 cut(s) 657
BstHHI GCGC 1 cut(s) 651
BstKTI GATC 4 cut(s) 120, 160, 173, 418
BstMAI GTCTC 3 cut(s) 69, 554, 786
BstMBI GATC 4 cut(s) 117, 157, 170, 415
BstMWI GCNNNNNNNGC 1 cut(s) 863
BstNI CCWGG 3 cut(s) 424, 449, 486
BstSCI CCNGG 3 cut(s) 422, 447, 484
BstV1I GCAGC 1 cut(s) 389
BstX2I RGATCY 4 cut(s) 117, 157, 170, 415
BstYI RGATCY 4 cut(s) 117, 157, 170, 415
BsuRI GGCC 6 cut(s) 24, 287, 440, 479, 801, 942
BtgZI GCGATG 1 cut(s) 547
BtsCI GGATG 1 cut(s) 657
BtsIMutI CAGTG 1 cut(s) 5
BveI ACCTGC 1 cut(s) 812
Cac8I GCNNGC 1 cut(s) 477
CfoI GCGC 1 cut(s) 651
Cfr10I RCCGGY 1 cut(s) 545
Cfr13I GGNCC 3 cut(s) 445, 488, 800
CseI GACGC 1 cut(s) 51
CsiI ACCWGGT 1 cut(s) 447
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 3 cut(s) 271, 634, 697
DdeI CTNAG 3 cut(s) 691, 719, 747
DpnI GATC 4 cut(s) 119, 159, 172, 417
DpnII GATC 4 cut(s) 117, 157, 170, 415
EaeI YGGCCR 2 cut(s) 285, 940
Eam1104I CTCTTC 3 cut(s) 317, 405, 598
EarI CTCTTC 3 cut(s) 317, 405, 598
EciI GGCGGA 1 cut(s) 330
Eco130I CCWWGG 2 cut(s) 441, 515
Eco147I AGGCCT 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 359
Eco31I GGTCTC 1 cut(s) 554
Eco47I GGWCC 2 cut(s) 445, 488
EcoRII CCWGG 3 cut(s) 422, 447, 484
EcoT14I CCWWGG 2 cut(s) 441, 515
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 2 cut(s) 441, 515
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 3 cut(s) 274, 637, 700
FatI CATG 3 cut(s) 270, 633, 696
FauI CCCGC 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 1 cut(s) 644
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 2 cut(s) 168, 246
FspI TGCGCA 1 cut(s) 650
GlaI GCGC 1 cut(s) 650
GluI GCNGC 1 cut(s) 378
HaeIII GGCC 6 cut(s) 24, 287, 440, 479, 801, 942
HapII CCGG 1 cut(s) 546
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 651
Hin1II CATG 3 cut(s) 274, 637, 700
Hin6I GCGC 1 cut(s) 649
HinP1I GCGC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 3 cut(s) 10, 427, 743
HpaII CCGG 1 cut(s) 546
HphI GGTGA 2 cut(s) 84, 451
Hpy166II GTNNAC 2 cut(s) 254, 459
Hpy188I TCNGA 6 cut(s) 117, 157, 235, 694, 722, 895
Hpy188III TCNNGA 3 cut(s) 431, 574, 777
Hpy8I GTNNAC 2 cut(s) 254, 459
Hpy99I CGWCG 2 cut(s) 349, 352
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 2 cut(s) 580, 920
HpyCH4V TGCA 1 cut(s) 657
HpyF10VI GCNNNNNNNGC 1 cut(s) 863
HpyF3I CTNAG 3 cut(s) 691, 719, 747
Hsp92II CATG 3 cut(s) 274, 637, 700
HspAI GCGC 1 cut(s) 649
Kzo9I GATC 4 cut(s) 117, 157, 170, 415
LmnI GCTCC 2 cut(s) 354, 512
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 1 cut(s) 666
MabI ACCWGGT 1 cut(s) 447
MaeI CTAG 2 cut(s) 168, 246
MaeIII GTNAC 2 cut(s) 469, 920
MalI GATC 4 cut(s) 119, 159, 172, 417
MboI GATC 4 cut(s) 117, 157, 170, 415
MboII GAAGA 9 cut(s) 187, 334, 395, 398, 401, 413, 422, 585, 792
MflI RGATCY 4 cut(s) 117, 157, 170, 415
MhlI GDGCHC 1 cut(s) 359
MlsI TGGCCA 2 cut(s) 287, 942
MluNI TGGCCA 2 cut(s) 287, 942
MmeI TCCRAC 1 cut(s) 258
Mox20I TGGCCA 2 cut(s) 287, 942
MroXI GAANNNNTTC 2 cut(s) 587, 727
MscI TGGCCA 2 cut(s) 287, 942
MseI TTAA 3 cut(s) 18, 710, 949
Msp20I TGGCCA 2 cut(s) 287, 942
MspI CCGG 1 cut(s) 546
MspR9I CCNGG 3 cut(s) 424, 449, 486
MvaI CCWGG 3 cut(s) 424, 449, 486
MwoI GCNNNNNNNGC 1 cut(s) 863
NdeII GATC 4 cut(s) 117, 157, 170, 415
NlaIII CATG 3 cut(s) 274, 637, 700
NlaIV GGNNCC 5 cut(s) 119, 159, 356, 490, 502
NmuCI GTSAC 2 cut(s) 469, 920
NsbI TGCGCA 1 cut(s) 650
PceI AGGCCT 1 cut(s) 440
PdmI GAANNNNTTC 2 cut(s) 587, 727
PfeI GAWTC 3 cut(s) 10, 427, 743
PfoI TCCNGGA 1 cut(s) 484
PkrI GCNGC 1 cut(s) 379
Psp6I CCWGG 3 cut(s) 422, 447, 484
PspGI CCWGG 3 cut(s) 422, 447, 484
PspN4I GGNNCC 5 cut(s) 119, 159, 356, 490, 502
PspPI GGNCC 3 cut(s) 445, 488, 800
PsuI RGATCY 4 cut(s) 117, 157, 170, 415
SaqAI TTAA 3 cut(s) 18, 710, 949
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 4 cut(s) 117, 157, 170, 415
Sau96I GGNCC 3 cut(s) 445, 488, 800
ScrFI CCNGG 3 cut(s) 424, 449, 486
SduI GDGCHC 1 cut(s) 359
SexAI ACCWGGT 1 cut(s) 447
SfaNI GCATC 1 cut(s) 666
SinI GGWCC 2 cut(s) 445, 488
SpeI ACTAGT 1 cut(s) 245
SseBI AGGCCT 1 cut(s) 440
SsiI CCGC 3 cut(s) 95, 317, 341
SspMI CTAG 2 cut(s) 168, 246
StuI AGGCCT 1 cut(s) 440
StyD4I CCNGG 3 cut(s) 422, 447, 484
StyI CCWWGG 2 cut(s) 441, 515
TaaI ACNGT 2 cut(s) 580, 920
TaqI TCGA 1 cut(s) 601
TfiI GAWTC 3 cut(s) 10, 427, 743
Tru1I TTAA 3 cut(s) 18, 710, 949
Tru9I TTAA 3 cut(s) 18, 710, 949
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 2 cut(s) 469, 920
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 2 cut(s) 469, 920
TspDTI ATGAA 3 cut(s) 141, 690, 783
TspGWI ACGGA 1 cut(s) 650
TspRI CASTG 1 cut(s) 12
VpaK11BI GGWCC 2 cut(s) 445, 488
XapI RAATTY 3 cut(s) 148, 759, 771
XmnI GAANNNNTTC 2 cut(s) 587, 727
XspI CTAG 2 cut(s) 168, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.