Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000248.1

Orthogroup ID

OG0005677

Physical Location & Seq

Genomic Coordinates Forward (+)

47003 .. 48374

Gene Structure 1372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atgactttcttggcgacccaatgtgtcgtcgcctcaatcccagcatacccagtttgtaatcatcagcccaaacctcctgggtgcctctcccagagaatccaatcgaaatcggacagaatcccagttgttaaaacccaacagtcgagctttccaactagtcaggaatcgagaagagagtctgagtgtgagtgcttcaatctgtacaaggagctagttccgtacagccaagcttggtcttggcagaagagcattgtcaaggagaaaaaggctctgattgagaggaaggaggactgcccggactcgctgttcgttcttcagcatcctcctgtttatacaatgggcaccggtagctcagaaaagttcctcaattttgacctcaaggatgctccgtttgatgttcaccggaccgaacgcggcggcgaggttacatatcatggtcctggtcagatagtaatgtaccccattataaatctccggaatcacaaaatggatcttcattggtacctcaggtcacttgaggaggtgatcattcgcgctctttcaaagacattttcgatcaaggcatctcgacttgagggcttaactggtgtttggcatggaaaccagaaactggcagccattggtgtacgagtgtctcagtggatagcttatcacggtttggcactgaacgtaaccacagatttaactccttttcgttggatagtaccgtgtggtttacaaaactatcaggtcggaagcattagagggttgttaggggagtttgagtcatttgacgatagtagtagaaaacagctaccagatcctgatgatggccagctgcttaatattgcttgtaaatctttgatccatgagttttcagaagtttttcaggttggaatcaattatgaaaccatctcgaggttagagtttttagaaagtgaacctgtaaatagtagtagaaaacagctaccagatcctgatgatggccagctacttaatattgcttgtaaatctttgatcaatgagttttcagaagtttttcaggttggaatcaattatgaaaccatctcgaggttagagtttttagaaagtgaacctgtaaagcctctaaaagaggaagtaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

BPL_LplA_LipB

Protein Analysis

368

Amino Acids

41.84

Weight (kDa)

5.79

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LplA-B_cat	PF21948	74 - 257	6.1e-40	Lipoyl protein ligase A/B catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47578 AT4G31050
fragaria_vesca	FvH4_2g26090 FvH4_2g26090
malus_domestica	MD06G1010800.v1.1
prunus_persica	Prupe.5G012900_v2.0.a1 Prupe.5G012900_v2.0.a1
pyrus_communis	pycom16g25840
rosa_chinensis	RchiOBHm_Chr5g0074221 RchiOBHm_Chr6g0294461
rosa_laevigata	RLG00000011867 RLG00000036458
rosa_multiflora	Rmu_co8046078.1_g000001 Rmu_sc0000573.1_g000055 Rmu_sc0004706.1_g000002 Rmu_ssc0000248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007250 Rroxscaffold_7G00173310
rosa_rugosa	Rorug05G0429500 Rorug06G0244800
rosa_samantha	Rh5DG520100 Rh5DG520400 Rh6AG357400 Rh6BG364300 Rh6CG371400 Rh6DG358200
rosa_wichuraiana	Rw5G045220 Rw6G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	467
Acc65I	GGTACC	1 cut(s)	501
AccB1I	GGYRCC	3 cut(s)	81, 341, 501
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccII	CGCG	2 cut(s)	414, 534
AccIII	TCCGGA	1 cut(s)	474
AciI	CCGC	2 cut(s)	414, 417
AclWI	GGATC	4 cut(s)	498, 794, 838, 947
AcoI	YGGCCR	2 cut(s)	811, 964
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	6 cut(s)	203, 221, 458, 503, 627, 705
AfiI	CCNNNNNNNGG	5 cut(s)	610, 809, 897, 962, 1050
AgeI	ACCGGT	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	196, 543
AhlI	ACTAGT	1 cut(s)	155
AjnI	CCWGG	2 cut(s)	76, 439
AloI	GAACNNNNNNTCC	2 cut(s)	290, 322
AluBI	AGCT	9 cut(s)	147, 211, 230, 351, 647, 793, 817, 946, 970
AluI	AGCT	9 cut(s)	147, 211, 230, 351, 647, 793, 817, 946, 970
Alw26I	GTCTC	1 cut(s)	639
AlwI	GGATC	4 cut(s)	498, 794, 838, 947
AlwNI	CAGNNNCTG	3 cut(s)	610, 803, 956
Ama87I	CYCGRG	2 cut(s)	895, 1048
Aor13HI	TCCGGA	1 cut(s)	474
AoxI	GGCC	2 cut(s)	811, 964
ApeKI	GCWGC	2 cut(s)	614, 817
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AsiGI	ACCGGT	1 cut(s)	344
Asp700I	GAANNNNTTC	2 cut(s)	864, 1017
Asp718I	GGTACC	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	536
AspS9I	GGNCC	2 cut(s)	405, 437
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	392, 535
AvaI	CYCGRG	2 cut(s)	895, 1048
AvaII	GGWCC	2 cut(s)	405, 437
AxyI	CCTNAGG	1 cut(s)	506
BaeGI	GKGCMC	1 cut(s)	344
BalI	TGGCCA	2 cut(s)	813, 966
BanI	GGYRCC	3 cut(s)	81, 341, 501
BbvI	GCAGC	2 cut(s)	626, 804
BccI	CCATC	4 cut(s)	803, 899, 956, 1052
BciT130I	CCWGG	2 cut(s)	78, 441
BclI	TGATCA	2 cut(s)	525, 996
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	639
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	2 cut(s)	156, 212
BisI	GCNGC	4 cut(s)	415, 418, 615, 818
BlsI	GCNGC	4 cut(s)	416, 419, 616, 819
Bme1390I	CCNGG	3 cut(s)	78, 296, 441
Bme18I	GGWCC	2 cut(s)	405, 437
BmeT110I	CYCGRG	2 cut(s)	895, 1048
BmgT120I	GGNCC	2 cut(s)	405, 437
BmiI	GGNNCC	3 cut(s)	83, 343, 503
BmrFI	CCNGG	3 cut(s)	78, 296, 441
BmrI	ACTGGG	2 cut(s)	44, 116
BmsI	GCATC	3 cut(s)	328, 373, 572
BmuI	ACTGGG	2 cut(s)	44, 116
BpuEI	CTTGAG	3 cut(s)	362, 536, 593
BpuMI	CCSGG	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	77
BsaWI	WCCGGW	3 cut(s)	344, 402, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bsc4I	CCNNNNNNNGG	5 cut(s)	610, 809, 897, 962, 1050
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	4 cut(s)	50, 122, 589, 615
Bse21I	CCTNAGG	1 cut(s)	506
BseAI	TCCGGA	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	78, 441
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	319, 388
BseLI	CCNNNNNNNGG	5 cut(s)	610, 809, 897, 962, 1050
BseMII	CTCAG	4 cut(s)	171, 366, 520, 650
BseNI	ACTGG	4 cut(s)	50, 122, 589, 615
BseRI	GAGGAG	1 cut(s)	533
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	626, 804
BseYI	CCCAGC	1 cut(s)	40
Bsh1236I	CGCG	2 cut(s)	414, 534
BshFI	GGCC	2 cut(s)	813, 966
BshNI	GGYRCC	3 cut(s)	81, 341, 501
BshTI	ACCGGT	1 cut(s)	344
BsiHKCI	CYCGRG	2 cut(s)	895, 1048
BsiSI	CCGG	4 cut(s)	296, 345, 403, 475
BslI	CCNNNNNNNGG	5 cut(s)	610, 809, 897, 962, 1050
BsmAI	GTCTC	1 cut(s)	639
BsnI	GGCC	2 cut(s)	813, 966
BsoBI	CYCGRG	2 cut(s)	895, 1048
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp13I	TCCGGA	1 cut(s)	474
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	7 cut(s)	490, 525, 555, 799, 843, 952, 996
BspACI	CCGC	2 cut(s)	414, 417
BspANI	GGCC	2 cut(s)	813, 966
BspCNI	CTCAG	4 cut(s)	172, 365, 519, 649
BspEI	TCCGGA	1 cut(s)	474
BspFNI	CGCG	2 cut(s)	414, 534
BspLI	GGNNCC	3 cut(s)	83, 343, 503
BspPI	GGATC	4 cut(s)	498, 794, 838, 947
BspQI	GCTCTTC	1 cut(s)	239
BspT107I	GGYRCC	3 cut(s)	81, 341, 501
BsrFI	RCCGGY	1 cut(s)	344
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	4 cut(s)	50, 122, 589, 615
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	7 cut(s)	490, 525, 555, 799, 843, 952, 996
Bst2UI	CCWGG	2 cut(s)	78, 441
Bst4CI	ACNGT	3 cut(s)	141, 656, 708
Bst6I	CTCTTC	2 cut(s)	166, 239
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	815, 968
BstDEI	CTNAG	4 cut(s)	180, 352, 506, 636
BstF5I	GGATG	2 cut(s)	319, 388
BstFNI	CGCG	2 cut(s)	414, 534
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	7 cut(s)	493, 528, 558, 802, 846, 955, 999
BstMAI	GTCTC	1 cut(s)	639
BstMBI	GATC	7 cut(s)	490, 525, 555, 799, 843, 952, 996
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstNI	CCWGG	2 cut(s)	78, 441
BstSCI	CCNGG	3 cut(s)	76, 294, 439
BstSLI	GKGCMC	1 cut(s)	344
BstUI	CGCG	2 cut(s)	414, 534
BstV1I	GCAGC	2 cut(s)	626, 804
BstX2I	RGATCY	3 cut(s)	490, 799, 952
BstYI	RGATCY	3 cut(s)	490, 799, 952
Bsu36I	CCTNAGG	1 cut(s)	506
BsuRI	GGCC	2 cut(s)	813, 966
BtsCI	GGATG	2 cut(s)	319, 388
BtsIMutI	CAGTG	2 cut(s)	644, 662
Cac8I	GCNNGC	2 cut(s)	815, 968
CaiI	CAGNNNCTG	3 cut(s)	610, 803, 956
CfoI	GCGC	1 cut(s)	536
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	405, 437
CpoI	CGGWCCG	1 cut(s)	405
Csp6I	GTAC	6 cut(s)	202, 220, 457, 502, 626, 704
CspAI	ACCGGT	1 cut(s)	344
CspI	CGGWCCG	1 cut(s)	405
CviAII	CATG	3 cut(s)	434, 596, 848
CviQI	GTAC	6 cut(s)	202, 220, 457, 502, 626, 704
DdeI	CTNAG	4 cut(s)	180, 352, 506, 636
DpnI	GATC	7 cut(s)	492, 527, 557, 801, 845, 954, 998
DpnII	GATC	7 cut(s)	490, 525, 555, 799, 843, 952, 996
EaeI	YGGCCR	2 cut(s)	811, 964
Eam1104I	CTCTTC	2 cut(s)	166, 239
EarI	CTCTTC	2 cut(s)	166, 239
Eco47I	GGWCC	2 cut(s)	405, 437
Eco57I	CTGAAG	1 cut(s)	299
Eco81I	CCTNAGG	1 cut(s)	506
Eco88I	CYCGRG	2 cut(s)	895, 1048
EcoRII	CCWGG	2 cut(s)	76, 439
FaeI	CATG	3 cut(s)	437, 599, 851
FaiI	YATR	9 cut(s)	46, 333, 430, 435, 467, 597, 849, 885, 1038
FatI	CATG	3 cut(s)	433, 595, 847
FbaI	TGATCA	2 cut(s)	525, 996
Fnu4HI	GCNGC	4 cut(s)	415, 418, 615, 818
FokI	GGATG	2 cut(s)	306, 395
Fsp4HI	GCNGC	4 cut(s)	415, 418, 615, 818
FspBI	CTAG	2 cut(s)	156, 212
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	4 cut(s)	415, 418, 615, 818
GsaI	CCCAGC	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	813, 966
HapII	CCGG	4 cut(s)	296, 345, 403, 475
HhaI	GCGC	1 cut(s)	536
Hin1II	CATG	3 cut(s)	437, 599, 851
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	9 cut(s)	96, 117, 164, 176, 299, 478, 764, 876, 1029
HpaII	CCGG	4 cut(s)	296, 345, 403, 475
HphI	GGTGA	2 cut(s)	392, 535
Hpy166II	GTNNAC	5 cut(s)	400, 626, 716, 920, 1073
Hpy188I	TCNGA	8 cut(s)	112, 181, 273, 355, 447, 734, 859, 1012
Hpy188III	TCNNGA	8 cut(s)	161, 168, 475, 567, 803, 895, 956, 1048
Hpy8I	GTNNAC	5 cut(s)	400, 626, 716, 920, 1073
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	3 cut(s)	141, 656, 708
HpyCH4IV	ACGT	1 cut(s)	669
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpyF3I	CTNAG	4 cut(s)	180, 352, 506, 636
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	3 cut(s)	437, 599, 851
HspAI	GCGC	1 cut(s)	534
Kpn2I	TCCGGA	1 cut(s)	474
KpnI	GGTACC	1 cut(s)	505
Ksp22I	TGATCA	2 cut(s)	525, 996
Kzo9I	GATC	7 cut(s)	490, 525, 555, 799, 843, 952, 996
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	2 cut(s)	208, 391
Lsp1109I	GCAGC	2 cut(s)	626, 804
LweI	GCATC	3 cut(s)	328, 373, 572
MaeI	CTAG	2 cut(s)	156, 212
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	3 cut(s)	424, 510, 670
MalI	GATC	7 cut(s)	492, 527, 557, 801, 845, 954, 998
MboI	GATC	7 cut(s)	490, 525, 555, 799, 843, 952, 996
MboII	GAAGA	4 cut(s)	183, 256, 305, 485
MflI	RGATCY	3 cut(s)	490, 799, 952
MhlI	GDGCHC	1 cut(s)	344
MlsI	TGGCCA	2 cut(s)	813, 966
MluCI	AATT	4 cut(s)	367, 880, 1033, 1101
MluNI	TGGCCA	2 cut(s)	813, 966
MlyI	GAGTC	3 cut(s)	185, 293, 773
MmeI	TCCRAC	5 cut(s)	176, 677, 712, 853, 1006
Mox20I	TGGCCA	2 cut(s)	813, 966
MroI	TCCGGA	1 cut(s)	474
MroXI	GAANNNNTTC	2 cut(s)	864, 1017
MscI	TGGCCA	2 cut(s)	813, 966
MseI	TTAA	5 cut(s)	129, 581, 683, 822, 975
Msp20I	TGGCCA	2 cut(s)	813, 966
MspA1I	CMGCKG	1 cut(s)	817
MspI	CCGG	4 cut(s)	296, 345, 403, 475
MspR9I	CCNGG	3 cut(s)	78, 296, 441
MvaI	CCWGG	2 cut(s)	78, 441
MvnI	CGCG	2 cut(s)	414, 534
MwoI	GCNNNNNNNGC	1 cut(s)	348
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	7 cut(s)	490, 525, 555, 799, 843, 952, 996
NlaIII	CATG	3 cut(s)	437, 599, 851
NlaIV	GGNNCC	3 cut(s)	83, 343, 503
NmuCI	GTSAC	1 cut(s)	510
PaeR7I	CTCGAG	2 cut(s)	895, 1048
PciSI	GCTCTTC	1 cut(s)	239
PdmI	GAANNNNTTC	2 cut(s)	864, 1017
PfeI	GAWTC	6 cut(s)	96, 117, 164, 478, 876, 1029
PflMI	CCANNNNNTGG	1 cut(s)	610
PinAI	ACCGGT	1 cut(s)	344
PkrI	GCNGC	4 cut(s)	416, 419, 616, 819
PleI	GAGTC	3 cut(s)	184, 293, 772
PpsI	GAGTC	3 cut(s)	184, 293, 772
PsiI	TTATAA	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	76, 439
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	2 cut(s)	76, 439
PspN4I	GGNNCC	3 cut(s)	83, 343, 503
PspPI	GGNCC	2 cut(s)	405, 437
PstNI	CAGNNNCTG	3 cut(s)	610, 803, 956
PsuI	RGATCY	3 cut(s)	490, 799, 952
PvuII	CAGCTG	1 cut(s)	817
RsaI	GTAC	6 cut(s)	203, 221, 458, 503, 627, 705
RsaNI	GTAC	6 cut(s)	202, 220, 457, 502, 626, 704
Rsr2I	CGGWCCG	1 cut(s)	405
RsrII	CGGWCCG	1 cut(s)	405
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	5 cut(s)	129, 581, 683, 822, 975
SatI	GCNGC	4 cut(s)	415, 418, 615, 818
Sau3AI	GATC	7 cut(s)	490, 525, 555, 799, 843, 952, 996
Sau96I	GGNCC	2 cut(s)	405, 437
SchI	GAGTC	3 cut(s)	185, 293, 773
ScrFI	CCNGG	3 cut(s)	78, 296, 441
SduI	GDGCHC	1 cut(s)	344
SfaNI	GCATC	3 cut(s)	328, 373, 572
Sfr274I	CTCGAG	2 cut(s)	895, 1048
SinI	GGWCC	2 cut(s)	405, 437
SlaI	CTCGAG	2 cut(s)	895, 1048
SmlI	CTYRAG	5 cut(s)	377, 515, 572, 895, 1048
SmoI	CTYRAG	5 cut(s)	377, 515, 572, 895, 1048
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	4 cut(s)	367, 880, 1033, 1101
SsiI	CCGC	2 cut(s)	414, 417
SspI	AATATT	2 cut(s)	826, 979
SspMI	CTAG	2 cut(s)	156, 212
StyD4I	CCNGG	3 cut(s)	76, 294, 439
TaaI	ACNGT	3 cut(s)	141, 656, 708
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	7 cut(s)	104, 143, 167, 554, 568, 896, 1049
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	4 cut(s)	367, 880, 1033, 1101
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	2 cut(s)	417, 420
TfiI	GAWTC	6 cut(s)	96, 117, 164, 478, 876, 1029
Tru1I	TTAA	5 cut(s)	129, 581, 683, 822, 975
Tru9I	TTAA	5 cut(s)	129, 581, 683, 822, 975
TscAI	CASTG	2 cut(s)	644, 669
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	2 cut(s)	614, 817
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	3 cut(s)	485, 900, 1053
TspGWI	ACGGA	2 cut(s)	207, 378
TspRI	CASTG	2 cut(s)	644, 669
Van91I	CCANNNNNTGG	1 cut(s)	610
VpaK11BI	GGWCC	2 cut(s)	405, 437
XhoI	CTCGAG	2 cut(s)	895, 1048
XmnI	GAANNNNTTC	2 cut(s)	864, 1017
XspI	CTAG	2 cut(s)	156, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.