Rmu_ssc0000351.1_g000001

rRNA-processing protein fcf2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000351.1
OG0006753
Physical Location & Seq
Forward (+)
1 .. 4297
4297 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 976 bp
gacctcggcacttcctcctactactccatcgcctttgcgtctcctcctcactgccaacaccaaaactcacggacttattgcttgcagcaccgacgtcagcgtcgcgaccttagccaacaagttccccgaagtcttcatggccacgtgtctctcccggtctgtcgccctcaacgcccagctccaatgtcctcctgtctccggcatgtccacggcgccggagtccgccatagagatcgtcgacacgtggctcaacactcccttcaaagtgccctatcctgcgtcaaagtcgaaaccttggtcggaaattagagctgattctgatttgaatgagagctcttgttccatctgctgtttggtgaagaatcagaatttgaatccgattgatataatgggaatggcggatatcaaagcagtagttggtctctcatgggagccaaagattccgaatttttcatcggcaaccaaacctagacttggagttgatgcaaaacctcaagaaaccaatcatctttggaaaccccccacccagcttgtggatggcctctttgtgccacccaataaccccaaaacgctgaataagttgcagaggaagcaactcaaagacacaactggctcgaattggtttgacatgcctgcaccaaccatgaccccagagttgcagaaagatctccaattactcaagttaaggagtgtcatggatccaaagagacactacaagaagggtgattcgcaaacttccaagtatttccaggtgggaacggtggtagagtcctcatcagaattcttctcaggtagactaacaaagaaggaaaggaaggcaaccgttgcagaggagctgctttctgatcctgcccttgcgacctacaggaagcggaaggttcgtgagatcgaagagaagaatcgaccggctgataatgaaaaatggaagaataaagggaagacgtcctataagcgtgcaaagcaaagaaggcactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf2

Protein Analysis

324

Amino Acids

36.15

Weight (kDa)

9.62

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf2 PF08698 200 - 292 5.2e-37 Fcf2 pre-rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 99
AatII GACGTC 2 cut(s) 97, 945
AccB1I GGYRCC 1 cut(s) 212
AccB7I CCANNNNNTGG 1 cut(s) 533
AccI GTMKAC 2 cut(s) 238, 794
AccII CGCG 1 cut(s) 105
AciI CCGC 3 cut(s) 223, 399, 872
AclWI GGATC 3 cut(s) 693, 706, 840
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 3 cut(s) 368, 446, 780
AcvI CACGTG 2 cut(s) 145, 244
AcyI GRCGYC 3 cut(s) 94, 213, 942
AfiI CCNNNNNNNGG 3 cut(s) 198, 474, 533
AflIII ACRYGT 2 cut(s) 144, 241
AgsI TTSAA 3 cut(s) 263, 326, 374
AjnI CCWGG 1 cut(s) 748
AluBI AGCT 5 cut(s) 179, 312, 334, 530, 836
AluI AGCT 5 cut(s) 179, 312, 334, 530, 836
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 5 cut(s) 45, 153, 200, 426, 701
AlwI GGATC 3 cut(s) 693, 706, 840
AoxI GGCC 2 cut(s) 139, 539
ApeKI GCWGC 2 cut(s) 85, 836
ApoI RAATTY 3 cut(s) 368, 446, 780
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
AspLEI GCGC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 368, 735
BaeGI GKGCMC 1 cut(s) 271
BalI TGGCCA 1 cut(s) 141
BamHI GGATCC 1 cut(s) 698
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 336
BbrPI CACGTG 2 cut(s) 145, 244
BbsI GAAGAC 2 cut(s) 125, 945
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 97, 823
BccI CCATC 3 cut(s) 35, 351, 531
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 750
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 5 cut(s) 45, 153, 200, 426, 701
BfaI CTAG 1 cut(s) 469
BfmI CTRYAG 1 cut(s) 863
BfoI RGCGCY 1 cut(s) 216
BglII AGATCT 1 cut(s) 665
BisI GCNGC 2 cut(s) 86, 837
BlsI GCNGC 2 cut(s) 87, 838
Bme1390I CCNGG 2 cut(s) 155, 750
BmiI GGNNCC 3 cut(s) 214, 433, 700
BmrFI CCNGG 2 cut(s) 155, 750
BmsI GCATC 1 cut(s) 473
BpiI GAAGAC 2 cut(s) 125, 945
Bpu10I CCTNAGC 1 cut(s) 110
BpuEI CTTGAG 2 cut(s) 478, 663
BpuMI CCSGG 1 cut(s) 155
BsaAI YACGTR 2 cut(s) 145, 244
BsaHI GRCGYC 3 cut(s) 94, 213, 942
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 3 cut(s) 4, 208, 294
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 474, 533
Bse118I RCCGGY 1 cut(s) 905
Bse1I ACTGG 1 cut(s) 614
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 3 cut(s) 4, 208, 294
BseGI GGATG 1 cut(s) 542
BseLI CCNNNNNNNGG 3 cut(s) 198, 474, 533
BseMII CTCAG 1 cut(s) 802
BseNI ACTGG 1 cut(s) 614
BseRI GAGGAG 3 cut(s) 33, 36, 846
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 2 cut(s) 97, 823
BseYI CCCAGC 2 cut(s) 175, 526
BsgI GTGCAG 1 cut(s) 619
Bsh1236I CGCG 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 906
BshFI GGCC 2 cut(s) 141, 541
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 906
BsiHKAI GWGCWC 1 cut(s) 336
BsiSI CCGG 4 cut(s) 155, 199, 216, 906
BslI CCNNNNNNNGG 3 cut(s) 198, 474, 533
BsmAI GTCTC 5 cut(s) 45, 153, 200, 426, 701
BsmBI CGTCTC 1 cut(s) 45
BsnI GGCC 2 cut(s) 141, 541
Bso31I GGTCTC 1 cut(s) 426
Bsp1286I GDGCHC 2 cut(s) 271, 336
Bsp143I GATC 5 cut(s) 232, 665, 698, 845, 886
Bsp68I TCGCGA 1 cut(s) 105
BspACI CCGC 3 cut(s) 223, 399, 872
BspANI GGCC 2 cut(s) 141, 541
BspCNI CTCAG 1 cut(s) 801
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 3 cut(s) 214, 433, 700
BspPI GGATC 3 cut(s) 693, 706, 840
BspT107I GGYRCC 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 905
BsrI ACTGG 1 cut(s) 614
BssAI RCCGGY 1 cut(s) 905
BssECI CCNNGG 3 cut(s) 4, 208, 294
BssMI GATC 5 cut(s) 232, 665, 698, 845, 886
BssNI GRCGYC 3 cut(s) 94, 213, 942
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 2 cut(s) 761, 824
Bst6I CTCTTC 1 cut(s) 886
BstACI GRCGYC 3 cut(s) 94, 213, 942
BstAPI GCANNNNNTGC 1 cut(s) 825
BstBAI YACGTR 2 cut(s) 145, 244
BstC8I GCNNGC 3 cut(s) 83, 634, 955
BstDEI CTNAG 2 cut(s) 110, 788
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 542
BstFNI CGCG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 5 cut(s) 235, 668, 701, 848, 889
BstMAI GTCTC 5 cut(s) 45, 153, 200, 426, 701
BstMBI GATC 5 cut(s) 232, 665, 698, 845, 886
BstMCI CGRYCG 1 cut(s) 906
BstMWI GCNNNNNNNGC 6 cut(s) 111, 171, 590, 825, 959, 968
BstNI CCWGG 1 cut(s) 750
BstNSI RCATGY 2 cut(s) 206, 632
BstSCI CCNGG 2 cut(s) 153, 748
BstSFI CTRYAG 1 cut(s) 863
BstSLI GKGCMC 1 cut(s) 271
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 2 cut(s) 97, 823
BstV2I GAAGAC 2 cut(s) 125, 945
BstX2I RGATCY 2 cut(s) 665, 698
BstYI RGATCY 2 cut(s) 665, 698
BsuRI GGCC 2 cut(s) 141, 541
BtgI CCRYGG 1 cut(s) 208
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 1 cut(s) 542
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
BtuMI TCGCGA 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 83, 634, 955
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 905
CseI GACGC 3 cut(s) 27, 89, 268
CspCI CAANNNNNGTGG 2 cut(s) 512, 547
CviAII CATG 6 cut(s) 137, 203, 427, 629, 644, 695
DdeI CTNAG 2 cut(s) 110, 788
DinI GGCGCC 1 cut(s) 214
DpnI GATC 5 cut(s) 234, 667, 700, 847, 888
DpnII GATC 5 cut(s) 232, 665, 698, 845, 886
DrdI GACNNNNNNGTC 1 cut(s) 99
DseDI GACNNNNNNGTC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 886
EarI CTCTTC 1 cut(s) 886
EciI GGCGGA 2 cut(s) 212, 414
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 426
Eco32I GATATC 1 cut(s) 404
Eco53kI GAGCTC 1 cut(s) 334
Eco72I CACGTG 2 cut(s) 145, 244
EcoICRI GAGCTC 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 780
EcoRII CCWGG 1 cut(s) 748
EcoRV GATATC 1 cut(s) 404
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 336
EgeI GGCGCC 1 cut(s) 214
EheI GGCGCC 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 6 cut(s) 140, 206, 430, 632, 647, 698
FaiI YATR 9 cut(s) 138, 204, 228, 387, 428, 630, 645, 696, 949
FatI CATG 6 cut(s) 136, 202, 426, 628, 643, 694
FblI GTMKAC 2 cut(s) 238, 794
Fnu4HI GCNGC 2 cut(s) 86, 837
FokI GGATG 1 cut(s) 549
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 86, 837
FspBI CTAG 1 cut(s) 469
GlaI GCGC 1 cut(s) 214
GluI GCNGC 2 cut(s) 86, 837
GsaI CCCAGC 2 cut(s) 179, 530
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 141, 541
HapII CCGG 4 cut(s) 155, 199, 216, 906
HgaI GACGC 3 cut(s) 27, 89, 268
HhaI GCGC 1 cut(s) 215
Hin1I GRCGYC 3 cut(s) 94, 213, 942
Hin1II CATG 6 cut(s) 140, 206, 430, 632, 647, 698
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HinfI GANTC 8 cut(s) 219, 315, 362, 374, 440, 726, 768, 899
HpaII CCGG 4 cut(s) 155, 199, 216, 906
HphI GGTGA 2 cut(s) 368, 735
Hpy166II GTNNAC 3 cut(s) 208, 239, 795
Hpy188I TCNGA 7 cut(s) 302, 320, 367, 379, 445, 779, 845
Hpy188III TCNNGA 3 cut(s) 104, 495, 882
Hpy8I GTNNAC 3 cut(s) 208, 239, 795
Hpy99I CGWCG 3 cut(s) 96, 105, 240
HpyAV CCTTC 6 cut(s) 269, 713, 800, 809, 869, 961
HpyCH4III ACNGT 2 cut(s) 761, 824
HpyCH4IV ACGT 4 cut(s) 94, 144, 243, 942
HpyCH4V TGCA 7 cut(s) 85, 486, 584, 636, 659, 828, 957
HpyF10VI GCNNNNNNNGC 6 cut(s) 111, 171, 590, 825, 959, 968
HpyF3I CTNAG 2 cut(s) 110, 788
HpySE526I ACGT 4 cut(s) 94, 144, 243, 942
Hsp92I GRCGYC 3 cut(s) 94, 213, 942
Hsp92II CATG 6 cut(s) 140, 206, 430, 632, 647, 698
HspAI GCGC 1 cut(s) 213
KasI GGCGCC 1 cut(s) 212
Kzo9I GATC 5 cut(s) 232, 665, 698, 845, 886
LmnI GCTCC 3 cut(s) 184, 431, 833
Lsp1109I GCAGC 2 cut(s) 97, 823
LweI GCATC 1 cut(s) 473
MaeI CTAG 1 cut(s) 469
MaeII ACGT 4 cut(s) 94, 144, 243, 942
MalI GATC 5 cut(s) 234, 667, 700, 847, 888
MboI GATC 5 cut(s) 232, 665, 698, 845, 886
MboII GAAGA 7 cut(s) 125, 371, 776, 903, 908, 938, 950
MflI RGATCY 2 cut(s) 665, 698
MhlI GDGCHC 2 cut(s) 271, 336
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 6 cut(s) 304, 368, 446, 617, 672, 780
MluNI TGGCCA 1 cut(s) 141
Mly113I GGCGCC 1 cut(s) 213
MlyI GAGTC 2 cut(s) 228, 777
MmeI TCCRAC 1 cut(s) 280
Mox20I TGGCCA 1 cut(s) 141
MscI TGGCCA 1 cut(s) 141
MseI TTAA 1 cut(s) 684
Msp20I TGGCCA 1 cut(s) 141
MspI CCGG 4 cut(s) 155, 199, 216, 906
MspR9I CCNGG 2 cut(s) 155, 750
MvaI CCWGG 1 cut(s) 750
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 6 cut(s) 111, 171, 590, 825, 959, 968
NarI GGCGCC 1 cut(s) 213
NciI CCSGG 1 cut(s) 155
NdeII GATC 5 cut(s) 232, 665, 698, 845, 886
NlaIII CATG 6 cut(s) 140, 206, 430, 632, 647, 698
NlaIV GGNNCC 3 cut(s) 214, 433, 700
NruI TCGCGA 1 cut(s) 105
NspI RCATGY 2 cut(s) 206, 632
PfeI GAWTC 6 cut(s) 315, 362, 374, 440, 726, 899
PflMI CCANNNNNTGG 1 cut(s) 533
PkrI GCNGC 2 cut(s) 87, 838
PleI GAGTC 2 cut(s) 227, 776
PluTI GGCGCC 1 cut(s) 216
PmaCI CACGTG 2 cut(s) 145, 244
PmlI CACGTG 2 cut(s) 145, 244
PpsI GAGTC 2 cut(s) 227, 776
Ppu21I YACGTR 2 cut(s) 145, 244
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 748
PspCI CACGTG 2 cut(s) 145, 244
PspFI CCCAGC 2 cut(s) 175, 526
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 3 cut(s) 214, 433, 700
PsuI RGATCY 2 cut(s) 665, 698
RruI TCGCGA 1 cut(s) 105
SacI GAGCTC 1 cut(s) 336
SalI GTCGAC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 684
SatI GCNGC 2 cut(s) 86, 837
Sau3AI GATC 5 cut(s) 232, 665, 698, 845, 886
SchI GAGTC 2 cut(s) 228, 777
ScrFI CCNGG 2 cut(s) 155, 750
SduI GDGCHC 2 cut(s) 271, 336
SfaNI GCATC 1 cut(s) 473
SfcI CTRYAG 1 cut(s) 863
SfoI GGCGCC 1 cut(s) 214
SmlI CTYRAG 2 cut(s) 493, 678
SmoI CTYRAG 2 cut(s) 493, 678
Sse9I AATT 6 cut(s) 304, 368, 446, 617, 672, 780
SsiI CCGC 3 cut(s) 223, 399, 872
SspDI GGCGCC 1 cut(s) 212
SspMI CTAG 1 cut(s) 469
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 153, 748
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 761, 824
TaiI ACGT 4 cut(s) 97, 147, 246, 945
TaqI TCGA 5 cut(s) 238, 288, 615, 889, 902
TasI AATT 6 cut(s) 304, 368, 446, 617, 672, 780
TfiI GAWTC 6 cut(s) 315, 362, 374, 440, 726, 899
Tru1I TTAA 1 cut(s) 684
Tru9I TTAA 1 cut(s) 684
TscAI CASTG 1 cut(s) 56
TseI GCWGC 2 cut(s) 85, 836
TspDTI ATGAA 3 cut(s) 125, 442, 931
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 533
XapI RAATTY 3 cut(s) 368, 446, 780
XceI RCATGY 2 cut(s) 206, 632
XcmI CCANNNNNNNNNTGG 3 cut(s) 350, 530, 534
XmiI GTMKAC 2 cut(s) 238, 794
XspI CTAG 1 cut(s) 469
ZraI GACGTC 2 cut(s) 95, 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.