Rroxscaffold_6G00398000

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003093
Physical Location & Seq
Forward (+)
19837696 .. 19846428
8733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00398000.1

Sequence Viewer

Length: 4014 bp
ATGTCGCCGGCGGCGGCGGACGTCCGGCCCCCGATTACATTTAAACCCTCCGGCAATCCTCAAAACCCTAAACCTTCATCGGAGGAGACGCCTTCCTATAACCCCTTCAATTTCAATGCTGTTGGTTCCGACGGTCCGTCGGGTCCAAATGTGCCGTCACGATCAGCTCGGCGGCCGCCGAGGTTGGCGAAGCACAGGAGGAAGCAGCATGCGAATGCGGGGTCGAGAACTGGGCCGGCTGAGACGGCCGGGCCGGAGGTGAACCCGTTTTGCTCGGTAAGTGGTGCTGCTGCTACTAGTGTTTTTAATCAGTTCAGTTTTCCGAGTGGTGGTGTGGGTTTCGGTTTTGGCGCTACATTGAGTGGTGTTGATGAGCGGGCTCAGGTGAATAGTGGGGGTGAGGTTGAGAGTGTGAGTGATAAGCAGGATGATCCTCCGGGACCGAGTTCGTGTGGGGAGAGGAGAGAATGTGACACTGATCAAAGTGGAAAAGGGATATTCGAGTGTGATCAGAACCATTCAGCTCCGAATTTGAGTGCCGAAAATGGAGAATCGGCAGAATGTGTTGAGAAACTCGGTGATTTTGGGTGTGGTTCAGAGGTAGGACAGAGTGAATATTGTGAAAATGAGGGGAAGTCAGGTAATGACTCTAGTGGTATTGGTTTTGTGTTTGGTTCCGGTTGGTTTAATTCAAGTTCAGATTTGAATTCAGGAAAGAATGGCTCTAGTGGAAATGTGGAAAAATTGGTTGATGAAGTTGGCAGGAAGATGAGAGTAGAGAGTGACACCGAGTTTGAGAAAGTGAAAGTTAATTCTTTCGAATTTCATACAGAGGAGCGTTGGAGCTCAGACAAGTTTCGTGATGAGGGCATTTTTGTATTTGGAAGCAGCGGTAAGAAAGGTTCCAGTTTGACGGATTCCAAGGTAGCTAATTGTCAAGAAGAGGTGAAATCAAGTGATGAAGGAGATTGCAAGTCCAATTCAAACAGTCGGAATGATAATCTGAGTTCTGATTTCAGTAGCAAGTGTAATCTTGTGTCTGAAACTAGTGAGGTAACTTGTGGAGATAATCATAAAAGTACTGACCATGTTGTATTTGGAAGCGAAAGTAACACGGCTGGTACCACCAGTGGGATTTCTAGTTCCACTGAGTTTACATTTCAGGCAGGACTTGGTGATAGTGTTGATGCAGGCCAGTTTCCTGAGTGTCAAATTAATAAACCCAATGCAGCTGCTGGCCCATGTTCATTCTCATCAATTGGTCTTGGCATCCAACTAAATGGTTGTGTTTCTGAAGCAGCTTCTGCGGGTGGAGTAAAAGGTAAAGATGAAAGTAGCTTTACTAGCTCTCCAGATGGATTTGGAGTGTGCTTTGAGGACTTCAACACTCCATTGCGGTTTCCTGCTTGCCTCAAAGAAAATCTATTTCCTGAAATAAATAAATCAAACATCAGTATGAAGGGTAGATCGGTTAGGGACAAGGGATCAAGGAAAACAAGGGGAAGGTTGAAGAAACCTTCTCTGAGTAAGCAATGGCCAGCGCAAGATAATGTTGCCAAGGAAAGTAGTTCCCAAGAAAACCCAGTCTCACCTGGATGTGGCTCACCCATGGATTTCTCTCCTTATGAGGAAACTACAGTTGCTGATCCACATTCGAGGGAATCTTCTACAATGTCTAATGACACCTTCCACCTAGTCAGTAATACTGCACCTTGTGGCTCCGATGCAACAGTTCCCATTGGACCTAATGATGATGAGGGAGAATTTGCCGCTAAAGGTGATCAGATATATGGTAAGGCCACTGACGAGAATTCTAGGTATCATGGTGAAAGAATATTTGTTGACAATTGTTCCTCCAAAGGGTCTGGTTCTGGAGCTGAAACTCTCTGCTTTAGCTCCAATGGTATCAGTCATGCTGGTAAGGATTCAGAAGACGTTAGAGCTGATAATGGTGTGAATCTAGAAAGTCAAGAACAGGATTGTGGAACACCGTGTTTTGCTTCTGGTTTTGAAAATATGGAGAGGAAAATATTTACCTTTGTTGCATCATCTTCTGCAGAAGGAAGTCCAATAGTGGCAAGGCGTCTTCCGCGCAGAGTGAAAAATAAGAAGAAAGTTGGTTCAAATATGTTTGTTATAACTCCAAGTCCAAATGTTCAGTTTGGAGGTTCTGACCAATATACACCCCACTCTAGCACACCATTGTCTTTTGATGCTGTAGGAAAATCTGAGCCCCATGAACAAGTAACGAAAGTGCATATCCCTTCTACTGAGGCTACTCATGAGACTTGTGAGAAGTGGCGAATTAGGGGCAACAAAGCTTATAGGAACAAAGACTTTTCAAAAGCTGAAGACTTTTACACACAGGGAATAGTTTCTGTACCTTCAAGTGAAAGATCGGGAAGCTGCCTTAGGCCTCTTTTACTATGTTATAGCAATCGTGCAGCAACAAGGATGCATATGGGAAGGATAAGGGAAGCTTTAGGGGACTGCATGATGGCCACTGCACTAGACCCCAACTTTCTCAAAGTTCAAATGAGAGCTGCAAATTTCCATCTTCTTCTCGGCGAAGTTGAAAATGCCCAACGGTACTTTAATAATTGCTTGGAATCTGGAACTGGTGTGTGTTTGGATCGGAGAATTGTAATTGATTCTGCTGATGGCATACAAAAGGCTCAGAAAGTGGCTGAGTATACGAATCGCTCTGCCAAGCTTCTGGAACAGAGAACTACAGATGCAGCTCTCAGTGCCCTGGAAATTGTTTCTGAGGCCTTGTCTATTAGTGAATACTCGGAAAAATTACTTGAAATGAAGGCAGAGGCTTTGTGTTTGTTGAGGAGATATGAAGAGGCAATTCAACTGTGTGAACAGAGTATGTATTTTGCTGAGAAGAACTTTTCTTCGCTGAACAGTGTAGTAAATATGGATACTGCTGGATGTGAAGATCATCCATATGCTAGGTTGTGGAGGTGGTTCTTCGTATCCAAATCTTACTTTCATTTGGGAAGGTTTCAGGCCGCTCTTGATTTACTTGAGAAGCTAGAGCAAGTGGGATCTATCAAAGACAGGTATGCGAGTAAGAATCTGGAATCATCAATTTCATTAGCTGTCACCATACGTGAACTGTTAAGCCACAAGGATGCAGGGAATGAAGCATTTAGATCAGGAAGATATACAGAAGCAGTGGAGCATTATACTGTTGCTTTATCTCACAATATTGGATCTCGGCCATTTTCTGCAATCTGTTTGTGCAACCGTGCTGCAGCACACCAAGCTTTGGGTCAAATTACTGATGCCATTGCTGACTGCAGTCTTGCAATAGCTCTTGATGGACATTATGTTAAGGCATTTTCTAGAAGAGCTACCTTACATGAGATGATACGGGACTATGGACAGGCTGCTAGTGATCTCCAAAGACTTATTTCTGTACTGGAAAACCAATCTGGTGACAAGGCCAAAGAACCTACCTCACAAGGTAGCTCCAATGGCCGTACACAAGAATTACGGAACTCTTATCGACGTATGCCTTTAATGGAAGAAGAAGCTAAGAAAGGAATCCCCTTGAATTTTTACCTCATTCTGGGAATTAAATCATCTGACACAAGTTCTGACATTAAGAAGGCATACCGTAAGGCTGCTCTCAAGCATCATCCCGACAAGGCTGGTCAGTTCTTGGCAAGAAGTGAGAGTGGAGATGAAGGGCAACTCTGGAAAGAAATCTCTCTCGAGGTTCACAAGGATGCTGACAGACTCTTTAAAATGATCGGAGAGGCATATGCAGTACTTTCAGATCCCAACAAGCGCTCAGAATATGATCTTGAGGAAGACATAAGAAAATCAGCAAAGGAAAGCAAGGAACGTGGCGTCTACAGAAAGTCTTCAGATTTTCAGAGTCCTAGACGCAGCAGCTATAGAAAACCAGATTTTTATAGCTCTCCATTTGAGAGAAGCTCATATTGTCGGAACAGTAGGGAGAGTTGGAAGACATATGGAGATTCGTATTCACGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ TPR_8

Protein Analysis

1337

Amino Acids

145.85

Weight (kDa)

5.8

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 1189 - 1221 1.8e-09 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2138
AatII GACGTC 1 cut(s) 24
Acc65I GGTACC 1 cut(s) 1121
AccB1I GGYRCC 1 cut(s) 1121
AccB7I CCANNNNNTGG 1 cut(s) 3277
AccBSI CCGCTC 2 cut(s) 376, 3020
AccI GTMKAC 2 cut(s) 2693, 3867
AccII CGCG 1 cut(s) 2092
AclWI GGATC 7 cut(s) 425, 1492, 1640, 2640, 3061, 3229, 3785
AcoI YGGCCR 6 cut(s) 173, 246, 1535, 2499, 3227, 3487
AcsI RAATTY 7 cut(s) 529, 706, 821, 1763, 1810, 2548, 3565
AcuI CTGAAG 3 cut(s) 1314, 2370, 3864
AcyI GRCGYC 4 cut(s) 21, 89, 2083, 3864
AdeI CACNNNGTG 1 cut(s) 1715
AfaI GTAC 7 cut(s) 1081, 1123, 2382, 2591, 3429, 3493, 3783
AfeI AGCGCT 1 cut(s) 3803
AfiI CCNNNNNNNGG 6 cut(s) 329, 1131, 1598, 1860, 3277, 3580
AhdI GACNNNNNGTC 1 cut(s) 136
AhlI ACTAGT 2 cut(s) 296, 1046
AjnI CCWGG 2 cut(s) 1591, 2751
AloI GAACNNNNNNTCC 2 cut(s) 1126, 1158
Alw21I GWGCWC 1 cut(s) 848
Alw26I GTCTC 4 cut(s) 80, 236, 1591, 2279
AlwI GGATC 7 cut(s) 425, 1492, 1640, 2640, 3061, 3229, 3785
AlwNI CAGNNNCTG 3 cut(s) 1235, 1304, 1643
Ama87I CYCGRG 1 cut(s) 3725
Aor51HI AGCGCT 1 cut(s) 3803
ApoI RAATTY 7 cut(s) 529, 706, 821, 1763, 1810, 2548, 3565
ArsI GACNNNNNNTTYG 6 cut(s) 140, 172, 206, 238, 776, 808
AseI ATTAAT 1 cut(s) 1215
Asp700I GAANNNNTTC 2 cut(s) 2374, 3877
Asp718I GGTACC 1 cut(s) 1121
AspLEI GCGC 4 cut(s) 353, 1543, 2094, 3804
AspS9I GGNCC 8 cut(s) 27, 134, 143, 233, 251, 440, 1238, 1742
AsuC2I CCSGG 2 cut(s) 250, 438
AsuII TTCGAA 1 cut(s) 819
AvaI CYCGRG 1 cut(s) 3725
AvaII GGWCC 4 cut(s) 134, 143, 440, 1742
AxyI CCTNAGG 1 cut(s) 2411
BaeGI GKGCMC 1 cut(s) 2752
BalI TGGCCA 2 cut(s) 1537, 2501
BanI GGYRCC 1 cut(s) 1121
BanII GRGCYC 3 cut(s) 382, 848, 2235
BbsI GAAGAC 6 cut(s) 1938, 2078, 2358, 3831, 3870, 3989
Bbv12I GWGCWC 1 cut(s) 848
BccI CCATC 6 cut(s) 1349, 2491, 2562, 2654, 3323, 4002
BceAI ACGGC 4 cut(s) 139, 261, 1131, 3474
BciT130I CCWGG 2 cut(s) 1593, 2753
BciVI GTATCC 2 cut(s) 2920, 2992
BclI TGATCA 3 cut(s) 478, 508, 1780
BcnI CCSGG 2 cut(s) 250, 438
BcoDI GTCTC 4 cut(s) 80, 236, 1591, 2279
BcuI ACTAGT 2 cut(s) 296, 1046
BfmI CTRYAG 8 cut(s) 1635, 2055, 2217, 2730, 3261, 3307, 3868, 3910
BfoI RGCGCY 2 cut(s) 354, 3805
BfuI GTATCC 2 cut(s) 2920, 2992
BmcAI AGTACT 2 cut(s) 1081, 3783
Bme1390I CCNGG 4 cut(s) 250, 438, 1593, 2753
Bme18I GGWCC 4 cut(s) 134, 143, 440, 1742
BmeRI GACNNNNNGTC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 3725
BmgT120I GGNCC 8 cut(s) 27, 134, 143, 233, 251, 440, 1238, 1742
BmiI GGNNCC 8 cut(s) 29, 127, 144, 441, 676, 904, 1123, 1720
BmrFI CCNGG 4 cut(s) 250, 438, 1593, 2753
BmrI ACTGGG 2 cut(s) 240, 1577
BmuI ACTGGG 2 cut(s) 240, 1577
BoxI GACNNNNGTC 1 cut(s) 3309
BpiI GAAGAC 6 cut(s) 1938, 2078, 2358, 3831, 3870, 3989
BplI GAGNNNNNCTC 2 cut(s) 3935, 3967
BpmI CTGGAG 2 cut(s) 1335, 1893
Bpu10I CCTNAGC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 819
BpuEI CTTGAG 3 cut(s) 3053, 3626, 3839
BpuMI CCSGG 2 cut(s) 250, 438
BsaAI YACGTR 1 cut(s) 3119
BsaHI GRCGYC 4 cut(s) 21, 89, 2083, 3864
BsaJI CCNNGG 5 cut(s) 179, 921, 1557, 1608, 2751
BsaWI WCCGGW 1 cut(s) 677
BsaXI ACNNNNNCTCC 4 cut(s) 454, 484, 1333, 1363
Bsc4I CCNNNNNNNGG 6 cut(s) 329, 1131, 1598, 1860, 3277, 3580
Bse118I RCCGGY 2 cut(s) 7, 235
Bse1I ACTGG 7 cut(s) 235, 906, 1128, 1195, 1583, 2623, 3435
Bse21I CCTNAGG 1 cut(s) 2411
Bse3DI GCAATG 3 cut(s) 1391, 1538, 3297
BseBI CCWGG 2 cut(s) 1593, 2753
BseDI CCNNGG 5 cut(s) 179, 921, 1557, 1608, 2751
BseGI GGATG 9 cut(s) 433, 1269, 1601, 2460, 2942, 2947, 3145, 3649, 3745
BseLI CCNNNNNNNGG 6 cut(s) 329, 1131, 1598, 1860, 3277, 3580
BseMI GCAATG 3 cut(s) 1391, 1538, 3297
BseNI ACTGG 7 cut(s) 235, 906, 1128, 1195, 1583, 2623, 3435
BseRI GAGGAG 4 cut(s) 98, 475, 848, 2851
BseSI GKGCMC 1 cut(s) 2752
BseX3I CGGCCG 2 cut(s) 173, 246
BsgI GTGCAG 3 cut(s) 1692, 2463, 2490
Bsh1236I CGCG 1 cut(s) 2092
Bsh1285I CGRYCG 2 cut(s) 176, 249
BshNI GGYRCC 1 cut(s) 1121
BsiEI CGRYCG 2 cut(s) 176, 249
BsiHKAI GWGCWC 1 cut(s) 848
BsiHKCI CYCGRG 1 cut(s) 3725
BsiSI CCGG 8 cut(s) 8, 25, 51, 236, 249, 254, 437, 678
BslFI GGGAC 4 cut(s) 453, 1490, 2501, 3398
BslI CCNNNNNNNGG 6 cut(s) 329, 1131, 1598, 1860, 3277, 3580
BsmAI GTCTC 4 cut(s) 80, 236, 1591, 2279
BsmBI CGTCTC 2 cut(s) 80, 236
BsmFI GGGAC 4 cut(s) 453, 1490, 2501, 3398
BsmI GAATGC 1 cut(s) 220
BsoBI CYCGRG 1 cut(s) 3725
Bsp119I TTCGAA 1 cut(s) 819
Bsp1286I GDGCHC 4 cut(s) 382, 848, 2235, 2752
Bsp19I CCATGG 1 cut(s) 1608
BspFNI CGCG 1 cut(s) 2092
BspHI TCATGA 1 cut(s) 2281
BspLI GGNNCC 8 cut(s) 29, 127, 144, 441, 676, 904, 1123, 1720
BspMAI CTGCAG 3 cut(s) 2059, 3265, 3311
BspPI GGATC 7 cut(s) 425, 1492, 1640, 2640, 3061, 3229, 3785
BspQI GCTCTTC 1 cut(s) 3352
BspT104I TTCGAA 1 cut(s) 819
BspT107I GGYRCC 1 cut(s) 1121
BsrBI CCGCTC 2 cut(s) 376, 3020
BsrDI GCAATG 3 cut(s) 1391, 1538, 3297
BsrFI RCCGGY 2 cut(s) 7, 235
BsrI ACTGG 7 cut(s) 235, 906, 1128, 1195, 1583, 2623, 3435
BssAI RCCGGY 2 cut(s) 7, 235
BssECI CCNNGG 5 cut(s) 179, 921, 1557, 1608, 2751
BssNAI GTATAC 1 cut(s) 2694
BssNI GRCGYC 4 cut(s) 21, 89, 2083, 3864
BssT1I CCWWGG 3 cut(s) 921, 1557, 1608
Bst1107I GTATAC 1 cut(s) 2694
Bst2UI CCWGG 2 cut(s) 1593, 2753
Bst6I CTCTTC 3 cut(s) 936, 2841, 3352
BstACI GRCGYC 4 cut(s) 21, 89, 2083, 3864
BstAPI GCANNNNNTGC 1 cut(s) 1304
BstBAI YACGTR 1 cut(s) 3119
BstBI TTCGAA 1 cut(s) 819
BstC8I GCNNGC 8 cut(s) 9, 210, 237, 378, 1192, 1237, 1408, 1539
BstDSI CCRYGG 1 cut(s) 1608
BstF5I GGATG 9 cut(s) 433, 1269, 1601, 2460, 2942, 2947, 3145, 3649, 3745
BstFNI CGCG 1 cut(s) 2092
BstH2I RGCGCY 2 cut(s) 354, 3805
BstHHI GCGC 4 cut(s) 353, 1543, 2094, 3804
BstMAI GTCTC 4 cut(s) 80, 236, 1591, 2279
BstMCI CGRYCG 2 cut(s) 176, 249
BstMWI GCNNNNNNNGC 7 cut(s) 245, 1304, 1344, 2089, 2747, 3272, 3486
BstNI CCWGG 2 cut(s) 1593, 2753
BstNSI RCATGY 1 cut(s) 212
BstPAI GACNNNNGTC 1 cut(s) 3309
BstSCI CCNGG 4 cut(s) 248, 436, 1591, 2751
BstSFI CTRYAG 8 cut(s) 1635, 2055, 2217, 2730, 3261, 3307, 3868, 3910
BstSLI GKGCMC 1 cut(s) 2752
BstUI CGCG 1 cut(s) 2092
BstV2I GAAGAC 6 cut(s) 1938, 2078, 2358, 3831, 3870, 3989
BstX2I RGATCY 3 cut(s) 3053, 3221, 3790
BstXI CCANNNNNNTGG 2 cut(s) 1280, 2716
BstYI RGATCY 3 cut(s) 3053, 3221, 3790
BstZ17I GTATAC 1 cut(s) 2694
BstZI CGGCCG 2 cut(s) 173, 246
Bsu36I CCTNAGG 1 cut(s) 2411
BsuI GTATCC 2 cut(s) 2920, 2992
BtgI CCRYGG 1 cut(s) 1608
BtsCI GGATG 9 cut(s) 433, 1269, 1601, 2460, 2942, 2947, 3145, 3649, 3745
BtsI GCAGTG 2 cut(s) 2502, 3189
BtsIMutI CAGTG 8 cut(s) 474, 1135, 1146, 1800, 2502, 2752, 2917, 3189
Cac8I GCNNGC 8 cut(s) 9, 210, 237, 378, 1192, 1237, 1408, 1539
CaiI CAGNNNCTG 3 cut(s) 1235, 1304, 1643
CciI TCATGA 1 cut(s) 2281
CciNI GCGGCCGC 1 cut(s) 173
CfoI GCGC 4 cut(s) 353, 1543, 2094, 3804
Cfr10I RCCGGY 2 cut(s) 7, 235
Cfr13I GGNCC 8 cut(s) 27, 134, 143, 233, 251, 440, 1238, 1742
CpoI CGGWCCG 1 cut(s) 134
CseI GACGC 4 cut(s) 97, 2072, 3853, 3909
Csp6I GTAC 7 cut(s) 1080, 1122, 2381, 2590, 3428, 3492, 3782
CspCI CAANNNNNGTGG 2 cut(s) 3841, 3876
CspI CGGWCCG 1 cut(s) 134
CviQI GTAC 7 cut(s) 1080, 1122, 2381, 2590, 3428, 3492, 3782
DraI TTTAAA 2 cut(s) 43, 3757
DraIII CACNNNGTG 1 cut(s) 1715
DriI GACNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 6 cut(s) 173, 246, 1535, 2499, 3227, 3487
EagI CGGCCG 2 cut(s) 173, 246
Eam1104I CTCTTC 3 cut(s) 936, 2841, 3352
Eam1105I GACNNNNNGTC 1 cut(s) 136
EarI CTCTTC 3 cut(s) 936, 2841, 3352
EciI GGCGGA 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 846
EclXI CGGCCG 2 cut(s) 173, 246
Eco130I CCWWGG 3 cut(s) 921, 1557, 1608
Eco147I AGGCCT 2 cut(s) 2416, 2771
Eco24I GRGCYC 3 cut(s) 382, 848, 2235
Eco47I GGWCC 4 cut(s) 134, 143, 440, 1742
Eco47III AGCGCT 1 cut(s) 3803
Eco52I CGGCCG 2 cut(s) 173, 246
Eco53kI GAGCTC 1 cut(s) 846
Eco57I CTGAAG 3 cut(s) 1314, 2370, 3864
Eco81I CCTNAGG 1 cut(s) 2411
Eco88I CYCGRG 1 cut(s) 3725
EcoICRI GAGCTC 1 cut(s) 846
EcoRI GAATTC 2 cut(s) 706, 1810
EcoRII CCWGG 2 cut(s) 1591, 2751
EcoT14I CCWWGG 3 cut(s) 921, 1557, 1608
EcoT22I ATGCAT 1 cut(s) 2460
EcoT38I GRGCYC 3 cut(s) 382, 848, 2235
ErhI CCWWGG 3 cut(s) 921, 1557, 1608
Esp3I CGTCTC 2 cut(s) 80, 236
FalI AAGNNNNNCTT 2 cut(s) 2464, 2496
FaqI GGGAC 4 cut(s) 453, 1490, 2501, 3398
FauI CCCGC 3 cut(s) 211, 369, 1300
FauNDI CATATG 4 cut(s) 2460, 2953, 3775, 3988
FbaI TGATCA 3 cut(s) 478, 508, 1780
FblI GTMKAC 2 cut(s) 2693, 3867
FokI GGATG 9 cut(s) 440, 1256, 1608, 2467, 2934, 2949, 3152, 3636, 3752
FriOI GRGCYC 3 cut(s) 382, 848, 2235
GlaI GCGC 4 cut(s) 352, 1542, 2093, 3803
GsuI CTGGAG 2 cut(s) 1335, 1893
HaeII RGCGCY 2 cut(s) 354, 3805
HapII CCGG 8 cut(s) 8, 25, 51, 236, 249, 254, 437, 678
HgaI GACGC 4 cut(s) 97, 2072, 3853, 3909
HhaI GCGC 4 cut(s) 353, 1543, 2094, 3804
Hin1I GRCGYC 4 cut(s) 21, 89, 2083, 3864
Hin6I GCGC 4 cut(s) 351, 1541, 2092, 3802
HinP1I GCGC 4 cut(s) 351, 1541, 2092, 3802
HincII GTYRAC 1 cut(s) 1843
HindII GTYRAC 1 cut(s) 1843
HindIII AAGCTT 4 cut(s) 2319, 2478, 2711, 3273
HpaII CCGG 8 cut(s) 8, 25, 51, 236, 249, 254, 437, 678
Hpy166II GTNNAC 9 cut(s) 262, 1155, 1843, 2694, 2867, 3122, 3494, 3733, 3868
Hpy8I GTNNAC 9 cut(s) 262, 1155, 1843, 2694, 2867, 3122, 3494, 3733, 3868
Hpy99I CGWCG 3 cut(s) 134, 142, 3522
HpyCH4IV ACGT 5 cut(s) 21, 1935, 3118, 3520, 3859
HpyF10VI GCNNNNNNNGC 7 cut(s) 245, 1304, 1344, 2089, 2747, 3272, 3486
HpySE526I ACGT 5 cut(s) 21, 1935, 3118, 3520, 3859
Hsp92I GRCGYC 4 cut(s) 21, 89, 2083, 3864
HspAI GCGC 4 cut(s) 351, 1541, 2092, 3802
KpnI GGTACC 1 cut(s) 1125
KroI GCCGGC 2 cut(s) 7, 235
KroNI GCCGGC 2 cut(s) 9, 237
Ksp22I TGATCA 3 cut(s) 478, 508, 1780
LguI GCTCTTC 1 cut(s) 3352
LmnI GCTCC 8 cut(s) 529, 835, 843, 1724, 1874, 1901, 3187, 3485
MaeII ACGT 5 cut(s) 21, 1935, 3118, 3520, 3859
MaeIII GTNAC 8 cut(s) 156, 470, 782, 1054, 1109, 2245, 3109, 3446
MbiI CCGCTC 2 cut(s) 376, 3020
MfeI CAATTG 2 cut(s) 1257, 1846
MflI RGATCY 3 cut(s) 3053, 3221, 3790
MhlI GDGCHC 4 cut(s) 382, 848, 2235, 2752
MlsI TGGCCA 2 cut(s) 1537, 2501
MluNI TGGCCA 2 cut(s) 1537, 2501
MlyI GAGTC 3 cut(s) 641, 3744, 3901
MmeI TCCRAC 6 cut(s) 153, 821, 971, 1297, 3941, 3959
Mox20I TGGCCA 2 cut(s) 1537, 2501
Mph1103I ATGCAT 1 cut(s) 2460
MreI CGCCGGCG 1 cut(s) 7
MroNI GCCGGC 2 cut(s) 7, 235
MroXI GAANNNNTTC 2 cut(s) 2374, 3877
MscI TGGCCA 2 cut(s) 1537, 2501
MslI CAYNNNNRTG 6 cut(s) 213, 1454, 1594, 2952, 3138, 3738
Msp20I TGGCCA 2 cut(s) 1537, 2501
MspA1I CMGCKG 2 cut(s) 891, 1232
MspI CCGG 8 cut(s) 8, 25, 51, 236, 249, 254, 437, 678
MspR9I CCNGG 4 cut(s) 250, 438, 1593, 2753
MunI CAATTG 2 cut(s) 1257, 1846
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 2 cut(s) 1593, 2753
MvnI CGCG 1 cut(s) 2092
MwoI GCNNNNNNNGC 7 cut(s) 245, 1304, 1344, 2089, 2747, 3272, 3486
NaeI GCCGGC 2 cut(s) 9, 237
NciI CCSGG 2 cut(s) 250, 438
NcoI CCATGG 1 cut(s) 1608
NdeI CATATG 4 cut(s) 2460, 2953, 3775, 3988
NgoMIV GCCGGC 2 cut(s) 7, 235
NlaIV GGNNCC 8 cut(s) 29, 127, 144, 441, 676, 904, 1123, 1720
NmeAIII GCCGAG 4 cut(s) 148, 204, 2544, 3205
NmuCI GTSAC 5 cut(s) 156, 470, 782, 3109, 3446
NotI GCGGCCGC 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 2460
NspI RCATGY 1 cut(s) 212
NspV TTCGAA 1 cut(s) 819
PaeI GCATGC 1 cut(s) 212
PaeR7I CTCGAG 1 cut(s) 3725
PagI TCATGA 1 cut(s) 2281
PceI AGGCCT 2 cut(s) 2416, 2771
PciSI GCTCTTC 1 cut(s) 3352
PctI GAATGC 1 cut(s) 220
PdiI GCCGGC 2 cut(s) 9, 237
PdmI GAANNNNTTC 2 cut(s) 2374, 3877
PflMI CCANNNNNTGG 1 cut(s) 3277
PfoI TCCNGGA 1 cut(s) 436
PleI GAGTC 3 cut(s) 641, 3744, 3900
PpsI GAGTC 3 cut(s) 641, 3744, 3900
Ppu21I YACGTR 1 cut(s) 3119
PshAI GACNNNNGTC 1 cut(s) 3309
PshBI ATTAAT 1 cut(s) 1215
PsiI TTATAA 1 cut(s) 2138
Psp124BI GAGCTC 1 cut(s) 848
Psp6I CCWGG 2 cut(s) 1591, 2751
PspGI CCWGG 2 cut(s) 1591, 2751
PspN4I GGNNCC 8 cut(s) 29, 127, 144, 441, 676, 904, 1123, 1720
PspPI GGNCC 8 cut(s) 27, 134, 143, 233, 251, 440, 1238, 1742
PsrI GAACNNNNNNTAC 2 cut(s) 886, 918
PstI CTGCAG 3 cut(s) 2059, 3265, 3311
PstNI CAGNNNCTG 3 cut(s) 1235, 1304, 1643
PsuI RGATCY 3 cut(s) 3053, 3221, 3790
PvuII CAGCTG 1 cut(s) 1232
RsaI GTAC 7 cut(s) 1081, 1123, 2382, 2591, 3429, 3493, 3783
RsaNI GTAC 7 cut(s) 1080, 1122, 2381, 2590, 3428, 3492, 3782
RseI CAYNNNNRTG 6 cut(s) 213, 1454, 1594, 2952, 3138, 3738
Rsr2I CGGWCCG 1 cut(s) 134
RsrII CGGWCCG 1 cut(s) 134
SacI GAGCTC 1 cut(s) 848
SapI GCTCTTC 1 cut(s) 3352
Sau96I GGNCC 8 cut(s) 27, 134, 143, 233, 251, 440, 1238, 1742
ScaI AGTACT 2 cut(s) 1081, 3783
SchI GAGTC 3 cut(s) 641, 3744, 3901
ScrFI CCNGG 4 cut(s) 250, 438, 1593, 2753
SduI GDGCHC 4 cut(s) 382, 848, 2235, 2752
SfcI CTRYAG 8 cut(s) 1635, 2055, 2217, 2730, 3261, 3307, 3868, 3910
Sfr274I CTCGAG 1 cut(s) 3725
SfuI TTCGAA 1 cut(s) 819
SgrAI CRCCGGYG 1 cut(s) 7
SinI GGWCC 4 cut(s) 134, 143, 440, 1742
SlaI CTCGAG 1 cut(s) 3725
SmiMI CAYNNNNRTG 6 cut(s) 213, 1454, 1594, 2952, 3138, 3738
SmlI CTYRAG 4 cut(s) 3032, 3641, 3725, 3818
SmoI CTYRAG 4 cut(s) 3032, 3641, 3725, 3818
SpeI ACTAGT 2 cut(s) 296, 1046
SphI GCATGC 1 cut(s) 212
SseBI AGGCCT 2 cut(s) 2416, 2771
SspI AATATT 4 cut(s) 617, 1836, 2031, 3217
SstI GAGCTC 1 cut(s) 848
StuI AGGCCT 2 cut(s) 2416, 2771
StyD4I CCNGG 4 cut(s) 248, 436, 1591, 2751
StyI CCWWGG 3 cut(s) 921, 1557, 1608
TaiI ACGT 5 cut(s) 24, 1938, 3121, 3523, 3862
TaqI TCGA 6 cut(s) 224, 501, 819, 1655, 3517, 3726
TaqII GACCGA 1 cut(s) 457
TatI WGTACW 3 cut(s) 1079, 3427, 3781
TauI GCSGC 6 cut(s) 14, 17, 175, 178, 1772, 3020
TscAI CASTG 8 cut(s) 481, 1135, 1153, 1807, 2509, 2752, 2917, 3189
TseFI GTSAC 5 cut(s) 156, 470, 782, 3109, 3446
Tsp45I GTSAC 5 cut(s) 156, 470, 782, 3109, 3446
TspGWI ACGGA 3 cut(s) 126, 929, 3520
TspRI CASTG 8 cut(s) 481, 1135, 1153, 1807, 2509, 2752, 2917, 3189
Van91I CCANNNNNTGG 1 cut(s) 3277
VpaK11BI GGWCC 4 cut(s) 134, 143, 440, 1742
VspI ATTAAT 1 cut(s) 1215
XapI RAATTY 7 cut(s) 529, 706, 821, 1763, 1810, 2548, 3565
XbaI TCTAGA 2 cut(s) 1960, 3353
XceI RCATGY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 1094
XhoI CTCGAG 1 cut(s) 3725
XmiI GTMKAC 2 cut(s) 2693, 3867
XmnI GAANNNNTTC 2 cut(s) 2374, 3877
ZraI GACGTC 1 cut(s) 22
ZrmI AGTACT 2 cut(s) 1081, 3783
Zsp2I ATGCAT 1 cut(s) 2460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.