Rroxscaffold_7G00211760

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003093
Physical Location & Seq
Forward (+)
62173401 .. 62175535
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211760.1

Sequence Viewer

Length: 1686 bp
ATGTCTTCCCCTTCCGCCTTCAGTTTTAAGGTTGGGGCCGGCGCAAACAATCCCTCACGATCAGGGAGTAAGCAGAACGCGAGTTCGACAGAGGCCAAGCCGTTTTGCTCGGTAAGTGATGGTATTAGCAACATGAAAATTGATAATGATATGTGCTTTGTGTTTGGTTCTAGTCGTTTTAATTCCAATTCAAATTTCAATTCAGGAGGGCATAATTACTTAAGTGGAAATATGGACAAAGCCAAAGTGGTTTCTGAAGTTTGCATGAAGATGAAAGTAGAGAGCGAAAAGGAATCTGAGCAAGTGGAAACCAATGCTTGCAACGTATCTAAAAAAAGTGTCAGGGTGAAAATAGTAAAAACTTGTGTACATCAGGTTTTTGAAGATATGAAGGGGAAAACTTTTCGATTTTCTGTGGAAGGTAGTTCAGTAAGGGCAAAGCCTCAACGACAACGTAGAGAGAAAAGTAGAACGAAAAATAGGATGAAAGTTGGTCATGATGTATTTTTTATAACTCCGAGTTGCTCTACTCCTTCAGTTAAGGAAGTGGATGTCCCTTCTACTTATGCTAGTCATAAAACCTGTGAAGCCTGTGCGGAGTTCCGAATCAGGGGAAACGAAGCTCATTGCAATAAATATTTTTTAAAAGCACAAGAGTATTACACACTGGGAATAGTATCTATAAGTGCAAGTGAAAGATCAGAATGCTGCCATAAGCATCTTTCGCTATGCTATAGGGATCGTGCAGCAGCAAGGGTGTCTCTGGGAAGGATAAGGGAAGCTTTAGCGGACACTTTGATGGCTATTCAACTGTACCCTAGGTTTCCTGAAGATCAAGTTAGGGCTGCAAATTGCCATCTTCTTCTCGGGGAAGTTGAATATGCACTGAAGTACTTCAATGAGTGCTTGGAATCAAAAAATGATGTGTGTTTGGACCGGAGAGTTGTAATAGAATGTGTTGATGGCATAAAAAAGGCTCAGAAAGTGGCTGAGTGTACAAATCGTTCTGCCACGCTTCTGGAACGGAGAACTACCGATGCTGCTCTTAGTGCCTTGGGAATAATTTCTGAGTCTTTGTCGGTTAGTATATACTCGGAAAAGTTACTTGAAATGAAAGCAGACACACTGTATTTGTTAAGGAGCTGGGGAAGGTTTGGGGCAGCTCTTAGTTTTGTGGAGCAAGTGAGATCTACACAAGACAAGTATGCAAGTAAGAATATGGAATCATCAATTTCAGCAGCTGTCACCATACGTGAACTGTTAAGCCAGAAGACCACAGGTAATGAAGCATTTAAAGCAGGAAGATATACAGAAGCCGTGGAGCGTTATACTAGCGCAGCTAGTGATATCCAAAGACTTATATCTATACTGGAAAAGCAAGCTGATGAAAAGGCCAAAGAGTCTACCTCAGAAGGCTCTTCCAATGCCTGTGCAAAAAAATTACAGCAGGCTCGTCGACGTTTGCCATCAGTGAAAGAAAAAGCTAAGAAAGGAATCCCCATGGATTTTAACCTCATTTTGGGGATTAAGCCATCTGACACAAGTTCTACTATCAAGAAGGCATACCGCATGGCAGCTCTCAAACATCATCCTGACAAGGCTGGCCAGTTCTTGGGAAGAAATGGGAGTCAAGATGAAGGGCGACTGTGGAAGGGAAATCTCTGTCGAGGTTCAGAAAGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ TPR_8

Protein Analysis

561

Amino Acids

62.31

Weight (kDa)

9.33

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 506 - 534 2.5e-07 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
AccB7I CCANNNNNTGG 1 cut(s) 1612
AccI GTMKAC 2 cut(s) 1403, 1456
AccII CGCG 1 cut(s) 80
AciI CCGC 4 cut(s) 15, 596, 788, 1567
AclWI GGATC 1 cut(s) 747
AcoI YGGCCR 1 cut(s) 1603
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 5 cut(s) 4, 276, 519, 849, 908
AfaI GTAC 4 cut(s) 369, 815, 893, 997
AfiI CCNNNNNNNGG 3 cut(s) 610, 1519, 1612
AflII CTTAAG 1 cut(s) 220
AgsI TTSAA 7 cut(s) 192, 199, 383, 809, 878, 898, 1109
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 9 cut(s) 623, 782, 1143, 1163, 1241, 1340, 1382, 1484, 1577
AluI AGCT 9 cut(s) 623, 782, 1143, 1163, 1241, 1340, 1382, 1484, 1577
Alw26I GTCTC 1 cut(s) 765
AlwI GGATC 1 cut(s) 747
AlwNI CAGNNNCTG 1 cut(s) 1241
Ama87I CYCGRG 1 cut(s) 866
AoxI GGCC 4 cut(s) 36, 93, 1392, 1603
ApeKI GCWGC 9 cut(s) 708, 746, 749, 845, 1040, 1160, 1238, 1337, 1574
ApoI RAATTY 1 cut(s) 193
Asp700I GAANNNNTTC 2 cut(s) 893, 1063
AspA2I CCTAGG 1 cut(s) 818
AspLEI GCGC 2 cut(s) 44, 1337
AspS9I GGNCC 2 cut(s) 36, 934
AsuHPI GGTGA 2 cut(s) 358, 1237
AvaI CYCGRG 1 cut(s) 866
AvaII GGWCC 1 cut(s) 934
AvrII CCTAGG 1 cut(s) 818
BalI TGGCCA 1 cut(s) 1605
BbsI GAAGAC 1 cut(s) 1277
BbvI GCAGC 9 cut(s) 695, 758, 761, 832, 1027, 1172, 1250, 1349, 1586
BccI CCATC 6 cut(s) 113, 793, 864, 956, 1474, 1540
BceAI ACGGC 2 cut(s) 85, 1301
BcgI CGANNNNNNTGC 2 cut(s) 1436, 1470
BcoDI GTCTC 1 cut(s) 765
BfaI CTAG 5 cut(s) 171, 570, 819, 1332, 1341
BfmI CTRYAG 1 cut(s) 733
BfrI CTTAAG 1 cut(s) 220
BglII AGATCT 1 cut(s) 1187
BisI GCNGC 9 cut(s) 709, 747, 750, 846, 1041, 1161, 1239, 1338, 1575
BlnI CCTAGG 1 cut(s) 818
BlsI GCNGC 9 cut(s) 710, 748, 751, 847, 1042, 1162, 1240, 1339, 1576
BmcAI AGTACT 1 cut(s) 893
Bme18I GGWCC 1 cut(s) 934
BmeT110I CYCGRG 1 cut(s) 866
BmgT120I GGNCC 2 cut(s) 36, 934
BmiI GGNNCC 1 cut(s) 37
BmrI ACTGGG 1 cut(s) 677
BmsI GCATC 3 cut(s) 727, 1027, 1670
BmuI ACTGGG 1 cut(s) 677
BpiI GAAGAC 1 cut(s) 1277
BplI GAGNNNNNCTC 2 cut(s) 1391, 1423
BsaAI YACGTR 1 cut(s) 1253
BsaJI CCNNGG 4 cut(s) 818, 1053, 1317, 1500
BsaWI WCCGGW 1 cut(s) 936
Bsc4I CCNNNNNNNGG 3 cut(s) 610, 1519, 1612
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 3 cut(s) 672, 1374, 1606
Bse3DI GCAATG 1 cut(s) 625
BseDI CCNNGG 4 cut(s) 818, 1053, 1317, 1500
BseGI GGATG 3 cut(s) 489, 556, 1588
BseLI CCNNNNNNNGG 3 cut(s) 610, 1519, 1612
BseMI GCAATG 1 cut(s) 625
BseMII CTCAG 5 cut(s) 288, 981, 992, 1059, 1422
BseNI ACTGG 3 cut(s) 672, 1374, 1606
BseXI GCAGC 9 cut(s) 695, 758, 761, 832, 1027, 1172, 1250, 1349, 1586
BseYI CCCAGC 1 cut(s) 1143
BsgI GTGCAG 1 cut(s) 765
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 4 cut(s) 38, 95, 1394, 1605
BsiHKCI CYCGRG 1 cut(s) 866
BsiSI CCGG 2 cut(s) 39, 937
BslFI GGGAC 1 cut(s) 539
BslI CCNNNNNNNGG 3 cut(s) 610, 1519, 1612
BsmAI GTCTC 1 cut(s) 765
BsmFI GGGAC 1 cut(s) 539
BsmI GAATGC 1 cut(s) 710
BsnI GGCC 4 cut(s) 38, 95, 1394, 1605
BsoBI CYCGRG 1 cut(s) 866
Bsp1407I TGTACA 2 cut(s) 367, 995
Bsp143I GATC 5 cut(s) 59, 698, 739, 832, 1187
Bsp19I CCATGG 1 cut(s) 1500
BspACI CCGC 4 cut(s) 15, 596, 788, 1567
BspANI GGCC 4 cut(s) 38, 95, 1394, 1605
BspCNI CTCAG 5 cut(s) 289, 982, 991, 1060, 1421
BspFNI CGCG 1 cut(s) 80
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 747
BspQI GCTCTTC 1 cut(s) 1423
BspTI CTTAAG 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 625
BsrFI RCCGGY 1 cut(s) 38
BsrGI TGTACA 2 cut(s) 367, 995
BsrI ACTGG 3 cut(s) 672, 1374, 1606
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 4 cut(s) 818, 1053, 1317, 1500
BssMI GATC 5 cut(s) 59, 698, 739, 832, 1187
BssT1I CCWWGG 3 cut(s) 818, 1053, 1500
Bst4CI ACNGT 4 cut(s) 813, 1128, 1260, 1647
Bst6I CTCTTC 1 cut(s) 1423
BstAFI CTTAAG 1 cut(s) 220
BstAUI TGTACA 2 cut(s) 367, 995
BstBAI YACGTR 1 cut(s) 1253
BstC8I GCNNGC 5 cut(s) 40, 319, 1380, 1449, 1603
BstDEI CTNAG 8 cut(s) 297, 978, 990, 1046, 1068, 1166, 1408, 1485
BstDSI CCRYGG 2 cut(s) 1317, 1500
BstF5I GGATG 3 cut(s) 489, 556, 1588
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 2 cut(s) 44, 1337
BstKTI GATC 5 cut(s) 62, 701, 742, 835, 1190
BstMAI GTCTC 1 cut(s) 765
BstMBI GATC 5 cut(s) 59, 698, 739, 832, 1187
BstMWI GCNNNNNNNGC 3 cut(s) 724, 1049, 1295
BstSFI CTRYAG 1 cut(s) 733
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 9 cut(s) 695, 758, 761, 832, 1027, 1172, 1250, 1349, 1586
BstV2I GAAGAC 1 cut(s) 1277
BstX2I RGATCY 1 cut(s) 1187
BstXI CCANNNNNNTGG 1 cut(s) 1018
BstYI RGATCY 1 cut(s) 1187
BsuRI GGCC 4 cut(s) 38, 95, 1394, 1605
BtgI CCRYGG 2 cut(s) 1317, 1500
BtsCI GGATG 3 cut(s) 489, 556, 1588
BtsIMutI CAGTG 4 cut(s) 665, 884, 1124, 1476
Cac8I GCNNGC 5 cut(s) 40, 319, 1380, 1449, 1603
CaiI CAGNNNCTG 1 cut(s) 1241
CciI TCATGA 1 cut(s) 496
CfoI GCGC 2 cut(s) 44, 1337
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 36, 934
Csp6I GTAC 4 cut(s) 368, 814, 892, 996
CviAII CATG 5 cut(s) 133, 265, 497, 1501, 1570
CviQI GTAC 4 cut(s) 368, 814, 892, 996
DdeI CTNAG 8 cut(s) 297, 978, 990, 1046, 1068, 1166, 1408, 1485
DpnI GATC 5 cut(s) 61, 700, 741, 834, 1189
DpnII GATC 5 cut(s) 59, 698, 739, 832, 1187
DraI TTTAAA 2 cut(s) 645, 1294
EaeI YGGCCR 1 cut(s) 1603
Eam1104I CTCTTC 1 cut(s) 1423
EarI CTCTTC 1 cut(s) 1423
EciI GGCGGA 1 cut(s) 4
Eco130I CCWWGG 3 cut(s) 818, 1053, 1500
Eco32I GATATC 1 cut(s) 1348
Eco47I GGWCC 1 cut(s) 934
Eco57I CTGAAG 5 cut(s) 4, 276, 519, 849, 908
Eco88I CYCGRG 1 cut(s) 866
EcoRV GATATC 1 cut(s) 1348
EcoT14I CCWWGG 3 cut(s) 818, 1053, 1500
ErhI CCWWGG 3 cut(s) 818, 1053, 1500
FaeI CATG 5 cut(s) 136, 268, 500, 1504, 1573
FalI AAGNNNNNCTT 2 cut(s) 766, 798
FaqI GGGAC 1 cut(s) 539
FatI CATG 5 cut(s) 132, 264, 496, 1500, 1569
FblI GTMKAC 2 cut(s) 1403, 1456
Fnu4HI GCNGC 9 cut(s) 709, 747, 750, 846, 1041, 1161, 1239, 1338, 1575
FokI GGATG 3 cut(s) 496, 563, 1575
Fsp4HI GCNGC 9 cut(s) 709, 747, 750, 846, 1041, 1161, 1239, 1338, 1575
FspBI CTAG 5 cut(s) 171, 570, 819, 1332, 1341
GlaI GCGC 2 cut(s) 43, 1336
GluI GCNGC 9 cut(s) 709, 747, 750, 846, 1041, 1161, 1239, 1338, 1575
GsaI CCCAGC 1 cut(s) 1147
HaeIII GGCC 4 cut(s) 38, 95, 1394, 1605
HapII CCGG 2 cut(s) 39, 937
HhaI GCGC 2 cut(s) 44, 1337
Hin1II CATG 5 cut(s) 136, 268, 500, 1504, 1573
Hin6I GCGC 2 cut(s) 42, 1335
HinP1I GCGC 2 cut(s) 42, 1335
HincII GTYRAC 1 cut(s) 1457
HindII GTYRAC 1 cut(s) 1457
HindIII AAGCTT 1 cut(s) 780
HinfI GANTC 8 cut(s) 293, 606, 911, 1070, 1223, 1400, 1494, 1627
HpaII CCGG 2 cut(s) 39, 937
HphI GGTGA 2 cut(s) 358, 1237
Hpy166II GTNNAC 5 cut(s) 368, 996, 1256, 1404, 1457
Hpy188III TCNNGA 8 cut(s) 57, 204, 497, 827, 1019, 1555, 1592, 1631
Hpy8I GTNNAC 5 cut(s) 368, 996, 1256, 1404, 1457
Hpy99I CGWCG 2 cut(s) 1458, 1461
HpyCH4III ACNGT 4 cut(s) 813, 1128, 1260, 1647
HpyCH4IV ACGT 4 cut(s) 324, 454, 1252, 1459
HpyCH4V TGCA 9 cut(s) 264, 321, 630, 689, 746, 848, 884, 1208, 1433
HpyF10VI GCNNNNNNNGC 3 cut(s) 724, 1049, 1295
HpyF3I CTNAG 8 cut(s) 297, 978, 990, 1046, 1068, 1166, 1408, 1485
HpySE526I ACGT 4 cut(s) 324, 454, 1252, 1459
Hsp92II CATG 5 cut(s) 136, 268, 500, 1504, 1573
HspAI GCGC 2 cut(s) 42, 1335
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
Kzo9I GATC 5 cut(s) 59, 698, 739, 832, 1187
LguI GCTCTTC 1 cut(s) 1423
LmnI GCTCC 3 cut(s) 1140, 1177, 1321
Lsp1109I GCAGC 9 cut(s) 695, 758, 761, 832, 1027, 1172, 1250, 1349, 1586
LweI GCATC 3 cut(s) 727, 1027, 1670
MaeI CTAG 5 cut(s) 171, 570, 819, 1332, 1341
MaeII ACGT 4 cut(s) 324, 454, 1252, 1459
MaeIII GTNAC 2 cut(s) 1101, 1243
MalI GATC 5 cut(s) 61, 700, 741, 834, 1189
MboI GATC 5 cut(s) 59, 698, 739, 832, 1187
MboII GAAGA 9 cut(s) 280, 395, 842, 851, 854, 1282, 1314, 1410, 1629
MflI RGATCY 1 cut(s) 1187
MlsI TGGCCA 1 cut(s) 1605
MluNI TGGCCA 1 cut(s) 1605
MlyI GAGTC 3 cut(s) 1079, 1409, 1636
MnlI CCTC 7 cut(s) 64, 85, 200, 453, 1417, 1523, 1661
Mox20I TGGCCA 1 cut(s) 1605
MroNI GCCGGC 1 cut(s) 38
MroXI GAANNNNTTC 2 cut(s) 893, 1063
MscI TGGCCA 1 cut(s) 1605
MslI CAYNNNNRTG 2 cut(s) 269, 797
Msp20I TGGCCA 1 cut(s) 1605
MspA1I CMGCKG 1 cut(s) 1241
MspCI CTTAAG 1 cut(s) 220
MspI CCGG 2 cut(s) 39, 937
Mva1269I GAATGC 1 cut(s) 710
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 3 cut(s) 724, 1049, 1295
NaeI GCCGGC 1 cut(s) 40
NcoI CCATGG 1 cut(s) 1500
NdeII GATC 5 cut(s) 59, 698, 739, 832, 1187
NgoMIV GCCGGC 1 cut(s) 38
NlaIII CATG 5 cut(s) 136, 268, 500, 1504, 1573
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 1243
PagI TCATGA 1 cut(s) 496
PciSI GCTCTTC 1 cut(s) 1423
PctI GAATGC 1 cut(s) 710
PdiI GCCGGC 1 cut(s) 40
PdmI GAANNNNTTC 2 cut(s) 893, 1063
PfeI GAWTC 5 cut(s) 293, 606, 911, 1223, 1494
PflMI CCANNNNNTGG 1 cut(s) 1612
PkrI GCNGC 9 cut(s) 710, 748, 751, 847, 1042, 1162, 1240, 1339, 1576
PleI GAGTC 3 cut(s) 1078, 1408, 1635
PpsI GAGTC 3 cut(s) 1078, 1408, 1635
Ppu21I YACGTR 1 cut(s) 1253
PsiI TTATAA 1 cut(s) 512
PspFI CCCAGC 1 cut(s) 1143
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 36, 934
PsrI GAACNNNNNNTAC 2 cut(s) 988, 1020
PstNI CAGNNNCTG 1 cut(s) 1241
PsuI RGATCY 1 cut(s) 1187
PvuII CAGCTG 1 cut(s) 1241
RsaI GTAC 4 cut(s) 369, 815, 893, 997
RsaNI GTAC 4 cut(s) 368, 814, 892, 996
RseI CAYNNNNRTG 2 cut(s) 269, 797
SalI GTCGAC 1 cut(s) 1455
SapI GCTCTTC 1 cut(s) 1423
SatI GCNGC 9 cut(s) 709, 747, 750, 846, 1041, 1161, 1239, 1338, 1575
Sau3AI GATC 5 cut(s) 59, 698, 739, 832, 1187
Sau96I GGNCC 2 cut(s) 36, 934
ScaI AGTACT 1 cut(s) 893
SchI GAGTC 3 cut(s) 1079, 1409, 1636
SfaNI GCATC 3 cut(s) 727, 1027, 1670
SfcI CTRYAG 1 cut(s) 733
SgrDI CGTCGACG 1 cut(s) 1455
SinI GGWCC 1 cut(s) 934
SmiMI CAYNNNNRTG 2 cut(s) 269, 797
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
SsiI CCGC 4 cut(s) 15, 596, 788, 1567
SspI AATATT 1 cut(s) 638
SspMI CTAG 5 cut(s) 171, 570, 819, 1332, 1341
StyI CCWWGG 3 cut(s) 818, 1053, 1500
TaaI ACNGT 4 cut(s) 813, 1128, 1260, 1647
TaiI ACGT 4 cut(s) 327, 457, 1255, 1462
TaqI TCGA 4 cut(s) 86, 406, 1456, 1666
TatI WGTACW 3 cut(s) 367, 891, 995
TfiI GAWTC 5 cut(s) 293, 606, 911, 1223, 1494
TscAI CASTG 4 cut(s) 672, 891, 1131, 1476
TseFI GTSAC 1 cut(s) 1243
TseI GCWGC 9 cut(s) 708, 746, 749, 845, 1040, 1160, 1238, 1337, 1574
Tsp45I GTSAC 1 cut(s) 1243
TspDTI ATGAA 9 cut(s) 149, 281, 287, 404, 500, 1127, 1299, 1401, 1650
TspGWI ACGGA 1 cut(s) 1039
TspRI CASTG 4 cut(s) 672, 891, 1131, 1476
Van91I CCANNNNNTGG 1 cut(s) 1612
Vha464I CTTAAG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 934
XapI RAATTY 1 cut(s) 193
XmaJI CCTAGG 1 cut(s) 818
XmiI GTMKAC 2 cut(s) 1403, 1456
XmnI GAANNNNTTC 2 cut(s) 893, 1063
XspI CTAG 5 cut(s) 171, 570, 819, 1332, 1341
ZrmI AGTACT 1 cut(s) 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.