Rh6AG060100

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003093
Physical Location & Seq
Reverse (-)
9034124 .. 9034966
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG060100.1

Sequence Viewer

Length: 843 bp
ATGGACGGTTCTGGATGTACTTACCCATTTGCTAGGTTGTGGAGGTGGGTTTTCATTTCCAAATCTTACTTTCAGCTGGGAAGGTTTGGGGCAGCTCTTAGTTTCGTGGAGCAAGTGAGATTTATACAAGACAAGTATGGAAGTAGGAATATGGAATCATCAATTTCAGCAGCTGTCACCATACGTGAACTGTTAAGCCACAAGACCACAGGTAATGAAGCATTTAAAGCAGGAAGATATACAGAAGCCGCAGAGCAATATACTATTGCTTTATCAAGAAATATTGGATCTCGCCCATTTGCTGCAATTTGTTTGTGCAACCGTGCTGCAGCTCACCAAGCTTTGGGTCAAATTATGGATGCCATTGCAGATTGCAGTCTTGCAATAGCTCTTGATGAAAATTATGGTAAGGCAGTTTCTAGAAGAGCTGCCTTACATGAGATGATACGGGACTACGTACAGGCAGCTAGCGATATCCAAAGACTTGTATCTATACTGGAAAAGCAAGCTGATGAAAAGGCCAAAGAGTCTACCTCAGAAGGCTCTTCCAATGCCTGTGCAAAAAAATTACAGCAGGCTCGTCGACGTTTGCCATCAATGAAAGAAAAAGCTAAGAAAGGAATCCCCATGGATTTTAACCTCATTTTGGGGATTAAACCATCTGACACAAGTTCTAATATCAAGAAGGCATACCGCATGGCAGCTCTCAAACATCATCCTGACAAGGCTGGCCAGTTCTTGGGAAGAAATGGGAGTCAAGATGAAGGGCGACTGTGGAAGGAAATCTCTGCCGAGGTTCAGAAAGATGCTGATAGGCTGTTTAAAATGATTGGAGAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ TPR_8

Protein Analysis

280

Amino Acids

31.09

Weight (kDa)

9.5

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 215 - 243 8.2e-08 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 343, 739
AccI GTMKAC 2 cut(s) 530, 583
AciI CCGC 2 cut(s) 249, 694
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 1 cut(s) 730
AfaI GTAC 2 cut(s) 19, 459
AfiI CCNNNNNNNGG 3 cut(s) 343, 646, 739
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 173
AoxI GGCC 2 cut(s) 519, 730
ApeKI GCWGC 8 cut(s) 92, 170, 302, 326, 329, 428, 464, 701
AsuHPI GGTGA 2 cut(s) 169, 326
AsuNHI GCTAGC 1 cut(s) 467
BalI TGGCCA 1 cut(s) 732
BbvI GCAGC 8 cut(s) 104, 182, 289, 313, 341, 415, 476, 713
BccI CCATC 2 cut(s) 601, 667
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BfaI CTAG 3 cut(s) 33, 420, 468
BfmI CTRYAG 1 cut(s) 327
BisI GCNGC 9 cut(s) 93, 171, 249, 303, 327, 330, 429, 465, 702
BlsI GCNGC 9 cut(s) 94, 172, 250, 304, 328, 331, 430, 466, 703
BmsI GCATC 2 cut(s) 349, 796
BmtI GCTAGC 1 cut(s) 471
BplI GAGNNNNNCTC 2 cut(s) 518, 550
BsaAI YACGTR 2 cut(s) 185, 457
BsaJI CCNNGG 2 cut(s) 627, 792
Bsc4I CCNNNNNNNGG 3 cut(s) 343, 646, 739
Bse1I ACTGG 2 cut(s) 501, 733
Bse3DI GCAATG 1 cut(s) 363
BseDI CCNNGG 2 cut(s) 627, 792
BseGI GGATG 3 cut(s) 20, 364, 715
BseLI CCNNNNNNNGG 3 cut(s) 343, 646, 739
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 2 cut(s) 501, 733
BseXI GCAGC 8 cut(s) 104, 182, 289, 313, 341, 415, 476, 713
BseYI CCCAGC 1 cut(s) 76
BshFI GGCC 2 cut(s) 521, 732
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 3 cut(s) 343, 646, 739
BsmFI GGGAC 1 cut(s) 464
BsnI GGCC 2 cut(s) 521, 732
Bsp143I GATC 1 cut(s) 287
Bsp19I CCATGG 1 cut(s) 627
BspACI CCGC 2 cut(s) 249, 694
BspANI GGCC 2 cut(s) 521, 732
BspCNI CTCAG 1 cut(s) 548
BspMAI CTGCAG 1 cut(s) 331
BspOI GCTAGC 1 cut(s) 471
BspPI GGATC 1 cut(s) 295
BspQI GCTCTTC 2 cut(s) 418, 550
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 2 cut(s) 501, 733
BssECI CCNNGG 2 cut(s) 627, 792
BssMI GATC 1 cut(s) 287
BssT1I CCWWGG 1 cut(s) 627
Bst4CI ACNGT 4 cut(s) 8, 192, 323, 774
Bst6I CTCTTC 2 cut(s) 418, 550
BstBAI YACGTR 2 cut(s) 185, 457
BstC8I GCNNGC 4 cut(s) 469, 507, 576, 730
BstDEI CTNAG 3 cut(s) 98, 535, 612
BstDSI CCRYGG 1 cut(s) 627
BstF5I GGATG 3 cut(s) 20, 364, 715
BstKTI GATC 1 cut(s) 290
BstMBI GATC 1 cut(s) 287
BstMWI GCNNNNNNNGC 2 cut(s) 227, 338
BstSFI CTRYAG 1 cut(s) 327
BstSNI TACGTA 1 cut(s) 457
BstV1I GCAGC 8 cut(s) 104, 182, 289, 313, 341, 415, 476, 713
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BsuRI GGCC 2 cut(s) 521, 732
BtgI CCRYGG 1 cut(s) 627
BtsCI GGATG 3 cut(s) 20, 364, 715
Cac8I GCNNGC 4 cut(s) 469, 507, 576, 730
CaiI CAGNNNCTG 1 cut(s) 173
Csp6I GTAC 2 cut(s) 18, 458
CviAII CATG 3 cut(s) 437, 628, 697
CviQI GTAC 2 cut(s) 18, 458
DdeI CTNAG 3 cut(s) 98, 535, 612
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
DraI TTTAAA 2 cut(s) 226, 823
EaeI YGGCCR 1 cut(s) 730
Eam1104I CTCTTC 2 cut(s) 418, 550
EarI CTCTTC 2 cut(s) 418, 550
Eco105I TACGTA 1 cut(s) 457
Eco130I CCWWGG 1 cut(s) 627
Eco32I GATATC 1 cut(s) 475
EcoRV GATATC 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 627
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 3 cut(s) 440, 631, 700
FaqI GGGAC 1 cut(s) 464
FatI CATG 3 cut(s) 436, 627, 696
FblI GTMKAC 2 cut(s) 530, 583
Fnu4HI GCNGC 9 cut(s) 93, 171, 249, 303, 327, 330, 429, 465, 702
FokI GGATG 3 cut(s) 27, 371, 702
Fsp4HI GCNGC 9 cut(s) 93, 171, 249, 303, 327, 330, 429, 465, 702
FspBI CTAG 3 cut(s) 33, 420, 468
GluI GCNGC 9 cut(s) 93, 171, 249, 303, 327, 330, 429, 465, 702
GsaI CCCAGC 1 cut(s) 80
HaeIII GGCC 2 cut(s) 521, 732
Hin1II CATG 3 cut(s) 440, 631, 700
HincII GTYRAC 1 cut(s) 584
HindII GTYRAC 1 cut(s) 584
HindIII AAGCTT 1 cut(s) 339
HinfI GANTC 4 cut(s) 155, 527, 621, 754
HphI GGTGA 2 cut(s) 169, 326
Hpy166II GTNNAC 3 cut(s) 188, 531, 584
Hpy188I TCNGA 3 cut(s) 538, 664, 801
Hpy188III TCNNGA 7 cut(s) 12, 276, 392, 420, 682, 719, 758
Hpy8I GTNNAC 3 cut(s) 188, 531, 584
Hpy99I CGWCG 2 cut(s) 585, 588
HpyAV CCTTC 5 cut(s) 75, 533, 679, 758, 772
HpyCH4III ACNGT 4 cut(s) 8, 192, 323, 774
HpyCH4IV ACGT 3 cut(s) 184, 456, 586
HpyCH4V TGCA 7 cut(s) 305, 318, 329, 368, 375, 383, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 338
HpyF3I CTNAG 3 cut(s) 98, 535, 612
HpySE526I ACGT 3 cut(s) 184, 456, 586
Hsp92II CATG 3 cut(s) 440, 631, 700
Kzo9I GATC 1 cut(s) 287
LguI GCTCTTC 2 cut(s) 418, 550
LmnI GCTCC 1 cut(s) 109
Lsp1109I GCAGC 8 cut(s) 104, 182, 289, 313, 341, 415, 476, 713
LweI GCATC 2 cut(s) 349, 796
MaeI CTAG 3 cut(s) 33, 420, 468
MaeII ACGT 3 cut(s) 184, 456, 586
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 4 cut(s) 246, 435, 537, 756
MflI RGATCY 1 cut(s) 287
MlsI TGGCCA 1 cut(s) 732
MluCI AATT 5 cut(s) 162, 306, 351, 400, 566
MluNI TGGCCA 1 cut(s) 732
MlyI GAGTC 2 cut(s) 536, 763
MnlI CCTC 5 cut(s) 36, 544, 650, 787, 829
Mox20I TGGCCA 1 cut(s) 732
MscI TGGCCA 1 cut(s) 732
MseI TTAA 5 cut(s) 194, 225, 636, 654, 822
Msp20I TGGCCA 1 cut(s) 732
MspA1I CMGCKG 2 cut(s) 76, 173
MwoI GCNNNNNNNGC 2 cut(s) 227, 338
NcoI CCATGG 1 cut(s) 627
NdeII GATC 1 cut(s) 287
NheI GCTAGC 1 cut(s) 467
NlaIII CATG 3 cut(s) 440, 631, 700
NmeAIII GCCGAG 1 cut(s) 817
NmuCI GTSAC 1 cut(s) 175
PciSI GCTCTTC 2 cut(s) 418, 550
PfeI GAWTC 2 cut(s) 155, 621
PflMI CCANNNNNTGG 2 cut(s) 343, 739
PkrI GCNGC 9 cut(s) 94, 172, 250, 304, 328, 331, 430, 466, 703
PleI GAGTC 2 cut(s) 535, 762
PpsI GAGTC 2 cut(s) 535, 762
Ppu21I YACGTR 2 cut(s) 185, 457
PspFI CCCAGC 1 cut(s) 76
PstI CTGCAG 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 287
PvuII CAGCTG 2 cut(s) 76, 173
RsaI GTAC 2 cut(s) 19, 459
RsaNI GTAC 2 cut(s) 18, 458
SalI GTCGAC 1 cut(s) 582
SapI GCTCTTC 2 cut(s) 418, 550
SaqAI TTAA 5 cut(s) 194, 225, 636, 654, 822
SatI GCNGC 9 cut(s) 93, 171, 249, 303, 327, 330, 429, 465, 702
Sau3AI GATC 1 cut(s) 287
SchI GAGTC 2 cut(s) 536, 763
SfaNI GCATC 2 cut(s) 349, 796
SfcI CTRYAG 1 cut(s) 327
SgrDI CGTCGACG 1 cut(s) 582
SnaBI TACGTA 1 cut(s) 457
Sse9I AATT 5 cut(s) 162, 306, 351, 400, 566
SsiI CCGC 2 cut(s) 249, 694
SspI AATATT 1 cut(s) 283
SspMI CTAG 3 cut(s) 33, 420, 468
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 4 cut(s) 8, 192, 323, 774
TaiI ACGT 3 cut(s) 187, 459, 589
TaqI TCGA 1 cut(s) 583
TasI AATT 5 cut(s) 162, 306, 351, 400, 566
TatI WGTACW 1 cut(s) 17
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 2 cut(s) 155, 621
Tru1I TTAA 5 cut(s) 194, 225, 636, 654, 822
Tru9I TTAA 5 cut(s) 194, 225, 636, 654, 822
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 8 cut(s) 92, 170, 302, 326, 329, 428, 464, 701
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 6 cut(s) 43, 231, 411, 528, 614, 777
Van91I CCANNNNNTGG 2 cut(s) 343, 739
XbaI TCTAGA 1 cut(s) 419
XmiI GTMKAC 2 cut(s) 530, 583
XspI CTAG 3 cut(s) 33, 420, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.