dnaJ homolog subfamily C member
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G41520 AT2G41520 AT2G41520 |
| fragaria_vesca | FvH4_2g04200 FvH4_6g24600 FvH4_6g24600 |
| malus_domestica | MD12G1083200.v1.1 MD14G1078300.v1.1 |
| prunus_persica | Prupe.7G052600_v2.0.a1 Prupe.7G052600_v2.0.a1 Prupe.7G052600_v2.0.a1 Prupe.7G052600_v2.0.a1 |
| pyrus_communis | pycom12g07010 |
| rosa_chinensis | RchiOBHm_Chr3g0483931 RchiOBHm_Chr6g0253551 |
| rosa_laevigata | RLG00000015000 RLG00000023251 |
| rosa_multiflora | Rmu_sc0002252.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00398000 Rroxscaffold_7G00211760 |
| rosa_rugosa | Rorug03G0209000 Rorug05G0545000 Rorug05G0545000 |
| rosa_samantha | Rh3AG257600 Rh3BG294400 Rh3CG292200 Rh3DG287400 Rh6AG060100 Rh6AG060200 Rh6AG060300 Rh6BG054200 Rh6CG053900 Rh6CG054000 Rh6DG051400 Rh6DG051500 |
| rosa_wichuraiana | Rw3G023280 Rw6G005380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 605 |
| AccI | GTMKAC | 2 cut(s) | 1621, 1674 |
| AccII | CGCG | 2 cut(s) | 80, 1208 |
| AciI | CCGC | 5 cut(s) | 15, 689, 881, 1206, 1208 |
| AclWI | GGATC | 1 cut(s) | 1417 |
| AcsI | RAATTY | 1 cut(s) | 193 |
| AcuI | CTGAAG | 3 cut(s) | 276, 942, 1001 |
| AfaI | GTAC | 6 cut(s) | 463, 908, 986, 1051, 1230, 1551 |
| AfeI | AGCGCT | 1 cut(s) | 1390 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 703, 1207 |
| AflII | CTTAAG | 1 cut(s) | 220 |
| AjnI | CCWGG | 1 cut(s) | 845 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 179, 211 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1182, 1214 |
| Alw26I | GTCTC | 2 cut(s) | 388, 858 |
| AlwI | GGATC | 1 cut(s) | 1417 |
| Ama87I | CYCGRG | 1 cut(s) | 959 |
| Aor51HI | AGCGCT | 1 cut(s) | 1390 |
| AoxI | GGCC | 3 cut(s) | 36, 93, 1610 |
| ApoI | RAATTY | 1 cut(s) | 193 |
| AseI | ATTAAT | 1 cut(s) | 1215 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 986, 1123 |
| AspA2I | CCTAGG | 1 cut(s) | 911 |
| AspLEI | GCGC | 2 cut(s) | 44, 1391 |
| AspS9I | GGNCC | 1 cut(s) | 36 |
| AsuHPI | GGTGA | 1 cut(s) | 359 |
| AvaI | CYCGRG | 1 cut(s) | 959 |
| AvrII | CCTAGG | 1 cut(s) | 911 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1228, 1260 |
| BccI | CCATC | 4 cut(s) | 113, 886, 957, 1010 |
| BceAI | ACGGC | 1 cut(s) | 85 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1079, 1113, 1654, 1688 |
| BciT130I | CCWGG | 1 cut(s) | 847 |
| BcoDI | GTCTC | 2 cut(s) | 388, 858 |
| BfaI | CTAG | 6 cut(s) | 171, 663, 912, 1272, 1386, 1560 |
| BfmI | CTRYAG | 2 cut(s) | 826, 1449 |
| BfoI | RGCGCY | 1 cut(s) | 1392 |
| BfrI | CTTAAG | 1 cut(s) | 220 |
| BglII | AGATCT | 1 cut(s) | 1358 |
| BlnI | CCTAGG | 1 cut(s) | 911 |
| BmcAI | AGTACT | 1 cut(s) | 986 |
| Bme1390I | CCNGG | 1 cut(s) | 847 |
| BmeT110I | CYCGRG | 1 cut(s) | 959 |
| BmgT120I | GGNCC | 1 cut(s) | 36 |
| BmiI | GGNNCC | 1 cut(s) | 37 |
| BmrFI | CCNGG | 1 cut(s) | 847 |
| BmrI | ACTGGG | 1 cut(s) | 770 |
| BmsI | GCATC | 3 cut(s) | 1081, 1087, 1471 |
| BmuI | ACTGGG | 1 cut(s) | 770 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1609, 1641 |
| BsaAI | YACGTR | 1 cut(s) | 779 |
| BsaI | GGTCTC | 1 cut(s) | 388 |
| BsaJI | CCNNGG | 4 cut(s) | 846, 911, 1113, 1206 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 703, 1207 |
| Bse118I | RCCGGY | 1 cut(s) | 38 |
| Bse1I | ACTGG | 2 cut(s) | 765, 1593 |
| Bse3DI | GCAATG | 2 cut(s) | 718, 1485 |
| BseBI | CCWGG | 1 cut(s) | 847 |
| BseDI | CCNNGG | 4 cut(s) | 846, 911, 1113, 1206 |
| BseGI | GGATG | 4 cut(s) | 582, 649, 1256, 1486 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 703, 1207 |
| BseMI | GCAATG | 2 cut(s) | 718, 1485 |
| BseMII | CTCAG | 6 cut(s) | 288, 381, 623, 1046, 1119, 1640 |
| BseNI | ACTGG | 2 cut(s) | 765, 1593 |
| BseYI | CCCAGC | 2 cut(s) | 1043, 1315 |
| BsgI | GTGCAG | 1 cut(s) | 858 |
| Bsh1236I | CGCG | 2 cut(s) | 80, 1208 |
| BshFI | GGCC | 3 cut(s) | 38, 95, 1612 |
| BsiHKCI | CYCGRG | 1 cut(s) | 959 |
| BsiSI | CCGG | 1 cut(s) | 39 |
| BslFI | GGGAC | 2 cut(s) | 632, 1556 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 703, 1207 |
| BsmAI | GTCTC | 2 cut(s) | 388, 858 |
| BsmFI | GGGAC | 2 cut(s) | 632, 1556 |
| BsmI | GAATGC | 1 cut(s) | 803 |
| BsnI | GGCC | 3 cut(s) | 38, 95, 1612 |
| Bso31I | GGTCTC | 1 cut(s) | 388 |
| BsoBI | CYCGRG | 1 cut(s) | 959 |
| Bsp1407I | TGTACA | 2 cut(s) | 1049, 1549 |
| Bsp143I | GATC | 6 cut(s) | 59, 791, 832, 925, 1358, 1409 |
| BspACI | CCGC | 5 cut(s) | 15, 689, 881, 1206, 1208 |
| BspANI | GGCC | 3 cut(s) | 38, 95, 1612 |
| BspCNI | CTCAG | 6 cut(s) | 289, 382, 622, 1045, 1120, 1639 |
| BspFNI | CGCG | 2 cut(s) | 80, 1208 |
| BspHI | TCATGA | 2 cut(s) | 589, 667 |
| BspLI | GGNNCC | 1 cut(s) | 37 |
| BspMAI | CTGCAG | 1 cut(s) | 1453 |
| BspPI | GGATC | 1 cut(s) | 1417 |
| BspQI | GCTCTTC | 1 cut(s) | 1641 |
| BspTI | CTTAAG | 1 cut(s) | 220 |
| BspTNI | GGTCTC | 1 cut(s) | 388 |
| BsrDI | GCAATG | 2 cut(s) | 718, 1485 |
| BsrFI | RCCGGY | 1 cut(s) | 38 |
| BsrGI | TGTACA | 2 cut(s) | 1049, 1549 |
| BsrI | ACTGG | 2 cut(s) | 765, 1593 |
| BssAI | RCCGGY | 1 cut(s) | 38 |
| BssECI | CCNNGG | 4 cut(s) | 846, 911, 1113, 1206 |
| BssMI | GATC | 6 cut(s) | 59, 791, 832, 925, 1358, 1409 |
| BssT1I | CCWWGG | 2 cut(s) | 911, 1113 |
| Bst2UI | CCWGG | 1 cut(s) | 847 |
| Bst4CI | ACNGT | 2 cut(s) | 906, 1445 |
| Bst6I | CTCTTC | 2 cut(s) | 1164, 1641 |
| BstAFI | CTTAAG | 1 cut(s) | 220 |
| BstAUI | TGTACA | 2 cut(s) | 1049, 1549 |
| BstBAI | YACGTR | 1 cut(s) | 779 |
| BstC8I | GCNNGC | 4 cut(s) | 40, 319, 1599, 1667 |
| BstDEI | CTNAG | 8 cut(s) | 297, 390, 609, 1032, 1106, 1128, 1337, 1626 |
| BstDSI | CCRYGG | 1 cut(s) | 1206 |
| BstF5I | GGATG | 4 cut(s) | 582, 649, 1256, 1486 |
| BstFNI | CGCG | 2 cut(s) | 80, 1208 |
| BstH2I | RGCGCY | 1 cut(s) | 1392 |
| BstHHI | GCGC | 2 cut(s) | 44, 1391 |
| BstKTI | GATC | 6 cut(s) | 62, 794, 835, 928, 1361, 1412 |
| BstMAI | GTCTC | 2 cut(s) | 388, 858 |
| BstMBI | GATC | 6 cut(s) | 59, 791, 832, 925, 1358, 1409 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 817, 893, 1100, 1109, 1460 |
| BstNI | CCWGG | 1 cut(s) | 847 |
| BstNSI | RCATGY | 1 cut(s) | 977 |
| BstSCI | CCNGG | 1 cut(s) | 845 |
| BstSFI | CTRYAG | 2 cut(s) | 826, 1449 |
| BstUI | CGCG | 2 cut(s) | 80, 1208 |
| BstX2I | RGATCY | 2 cut(s) | 1358, 1409 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1072 |
| BstYI | RGATCY | 2 cut(s) | 1358, 1409 |
| BsuRI | GGCC | 3 cut(s) | 38, 95, 1612 |
| BtgI | CCRYGG | 1 cut(s) | 1206 |
| BtsCI | GGATG | 4 cut(s) | 582, 649, 1256, 1486 |
| BtsIMutI | CAGTG | 2 cut(s) | 758, 977 |
| Cac8I | GCNNGC | 4 cut(s) | 40, 319, 1599, 1667 |
| CciI | TCATGA | 2 cut(s) | 589, 667 |
| CfoI | GCGC | 2 cut(s) | 44, 1391 |
| Cfr10I | RCCGGY | 1 cut(s) | 38 |
| Cfr13I | GGNCC | 1 cut(s) | 36 |
| Cfr42I | CCGCGG | 1 cut(s) | 1209 |
| CseI | GACGC | 3 cut(s) | 800, 893, 1250 |
| Csp6I | GTAC | 6 cut(s) | 462, 907, 985, 1050, 1229, 1550 |
| CviAII | CATG | 4 cut(s) | 265, 590, 668, 974 |
| CviQI | GTAC | 6 cut(s) | 462, 907, 985, 1050, 1229, 1550 |
| DdeI | CTNAG | 8 cut(s) | 297, 390, 609, 1032, 1106, 1128, 1337, 1626 |
| DpnI | GATC | 6 cut(s) | 61, 793, 834, 927, 1360, 1411 |
| DpnII | GATC | 6 cut(s) | 59, 791, 832, 925, 1358, 1409 |
| DraI | TTTAAA | 1 cut(s) | 738 |
| Eam1104I | CTCTTC | 2 cut(s) | 1164, 1641 |
| EarI | CTCTTC | 2 cut(s) | 1164, 1641 |
| EciI | GGCGGA | 1 cut(s) | 4 |
| Eco130I | CCWWGG | 2 cut(s) | 911, 1113 |
| Eco31I | GGTCTC | 1 cut(s) | 388 |
| Eco32I | GATATC | 1 cut(s) | 1567 |
| Eco47III | AGCGCT | 1 cut(s) | 1390 |
| Eco57I | CTGAAG | 3 cut(s) | 276, 942, 1001 |
| Eco88I | CYCGRG | 1 cut(s) | 959 |
| EcoRII | CCWGG | 1 cut(s) | 845 |
| EcoRV | GATATC | 1 cut(s) | 1567 |
| EcoT14I | CCWWGG | 2 cut(s) | 911, 1113 |
| ErhI | CCWWGG | 2 cut(s) | 911, 1113 |
| FaeI | CATG | 4 cut(s) | 268, 593, 671, 977 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 859, 891 |
| FaqI | GGGAC | 2 cut(s) | 632, 1556 |
| FatI | CATG | 4 cut(s) | 264, 589, 667, 973 |
| FblI | GTMKAC | 2 cut(s) | 1621, 1674 |
| FokI | GGATG | 4 cut(s) | 589, 656, 1263, 1493 |
| FspBI | CTAG | 6 cut(s) | 171, 663, 912, 1272, 1386, 1560 |
| GlaI | GCGC | 2 cut(s) | 43, 1390 |
| GsaI | CCCAGC | 2 cut(s) | 1047, 1319 |
| HaeII | RGCGCY | 1 cut(s) | 1392 |
| HaeIII | GGCC | 3 cut(s) | 38, 95, 1612 |
| HapII | CCGG | 1 cut(s) | 39 |
| HgaI | GACGC | 3 cut(s) | 800, 893, 1250 |
| HhaI | GCGC | 2 cut(s) | 44, 1391 |
| Hin1II | CATG | 4 cut(s) | 268, 593, 671, 977 |
| Hin6I | GCGC | 2 cut(s) | 42, 1389 |
| HinP1I | GCGC | 2 cut(s) | 42, 1389 |
| HincII | GTYRAC | 1 cut(s) | 1675 |
| HindII | GTYRAC | 1 cut(s) | 1675 |
| HindIII | AAGCTT | 2 cut(s) | 873, 1461 |
| HinfI | GANTC | 3 cut(s) | 293, 1468, 1618 |
| HpaII | CCGG | 1 cut(s) | 39 |
| HphI | GGTGA | 1 cut(s) | 359 |
| Hpy166II | GTNNAC | 4 cut(s) | 1050, 1190, 1622, 1675 |
| Hpy188I | TCNGA | 9 cut(s) | 256, 298, 612, 698, 796, 1035, 1129, 1156, 1629 |
| Hpy188III | TCNNGA | 8 cut(s) | 57, 204, 590, 668, 920, 1073, 1248, 1514 |
| Hpy8I | GTNNAC | 4 cut(s) | 1050, 1190, 1622, 1675 |
| Hpy99I | CGWCG | 2 cut(s) | 1676, 1679 |
| HpyAV | CCTTC | 9 cut(s) | 21, 28, 419, 478, 506, 660, 855, 1314, 1624 |
| HpyCH4III | ACNGT | 2 cut(s) | 906, 1445 |
| HpyCH4IV | ACGT | 4 cut(s) | 324, 547, 778, 1677 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 817, 893, 1100, 1109, 1460 |
| HpyF3I | CTNAG | 8 cut(s) | 297, 390, 609, 1032, 1106, 1128, 1337, 1626 |
| HpySE526I | ACGT | 4 cut(s) | 324, 547, 778, 1677 |
| Hsp92II | CATG | 4 cut(s) | 268, 593, 671, 977 |
| HspAI | GCGC | 2 cut(s) | 42, 1389 |
| KroI | GCCGGC | 1 cut(s) | 38 |
| KroNI | GCCGGC | 1 cut(s) | 40 |
| KspI | CCGCGG | 1 cut(s) | 1209 |
| Kzo9I | GATC | 6 cut(s) | 59, 791, 832, 925, 1358, 1409 |
| LguI | GCTCTTC | 1 cut(s) | 1641 |
| LmnI | GCTCC | 1 cut(s) | 1348 |
| LweI | GCATC | 3 cut(s) | 1081, 1087, 1471 |
| MaeI | CTAG | 6 cut(s) | 171, 663, 912, 1272, 1386, 1560 |
| MaeII | ACGT | 4 cut(s) | 324, 547, 778, 1677 |
| MalI | GATC | 6 cut(s) | 61, 793, 834, 927, 1360, 1411 |
| MboI | GATC | 6 cut(s) | 59, 791, 832, 925, 1358, 1409 |
| MboII | GAAGA | 7 cut(s) | 280, 488, 935, 944, 947, 1181, 1628 |
| MflI | RGATCY | 2 cut(s) | 1358, 1409 |
| MlyI | GAGTC | 2 cut(s) | 1477, 1627 |
| MnlI | CCTC | 9 cut(s) | 64, 85, 200, 546, 1123, 1155, 1165, 1275, 1635 |
| MroNI | GCCGGC | 1 cut(s) | 38 |
| MroXI | GAANNNNTTC | 2 cut(s) | 986, 1123 |
| MseI | TTAA | 7 cut(s) | 27, 180, 221, 633, 737, 1215, 1530 |
| MslI | CAYNNNNRTG | 1 cut(s) | 269 |
| MspA1I | CMGCKG | 2 cut(s) | 1208, 1315 |
| MspCI | CTTAAG | 1 cut(s) | 220 |
| MspI | CCGG | 1 cut(s) | 39 |
| MspR9I | CCNGG | 1 cut(s) | 847 |
| Mva1269I | GAATGC | 1 cut(s) | 803 |
| MvaI | CCWGG | 1 cut(s) | 847 |
| MvnI | CGCG | 2 cut(s) | 80, 1208 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 817, 893, 1100, 1109, 1460 |
| NaeI | GCCGGC | 1 cut(s) | 40 |
| NdeII | GATC | 6 cut(s) | 59, 791, 832, 925, 1358, 1409 |
| NgoMIV | GCCGGC | 1 cut(s) | 38 |
| NlaIII | CATG | 4 cut(s) | 268, 593, 671, 977 |
| NlaIV | GGNNCC | 1 cut(s) | 37 |
| NspI | RCATGY | 1 cut(s) | 977 |
| PagI | TCATGA | 2 cut(s) | 589, 667 |
| PciSI | GCTCTTC | 1 cut(s) | 1641 |
| PctI | GAATGC | 1 cut(s) | 803 |
| PdiI | GCCGGC | 1 cut(s) | 40 |
| PdmI | GAANNNNTTC | 2 cut(s) | 986, 1123 |
| PfeI | GAWTC | 1 cut(s) | 293 |
| PleI | GAGTC | 2 cut(s) | 1476, 1626 |
| PpsI | GAGTC | 2 cut(s) | 1476, 1626 |
| Ppu21I | YACGTR | 1 cut(s) | 779 |
| PshBI | ATTAAT | 1 cut(s) | 1215 |
| PsiI | TTATAA | 1 cut(s) | 605 |
| Psp6I | CCWGG | 1 cut(s) | 845 |
| PspFI | CCCAGC | 2 cut(s) | 1043, 1315 |
| PspGI | CCWGG | 1 cut(s) | 845 |
| PspN4I | GGNNCC | 1 cut(s) | 37 |
| PspPI | GGNCC | 1 cut(s) | 36 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1042, 1074 |
| PstI | CTGCAG | 1 cut(s) | 1453 |
| PsuI | RGATCY | 2 cut(s) | 1358, 1409 |
| PvuII | CAGCTG | 1 cut(s) | 1315 |
| RsaI | GTAC | 6 cut(s) | 463, 908, 986, 1051, 1230, 1551 |
| RsaNI | GTAC | 6 cut(s) | 462, 907, 985, 1050, 1229, 1550 |
| RseI | CAYNNNNRTG | 1 cut(s) | 269 |
| SacII | CCGCGG | 1 cut(s) | 1209 |
| SalI | GTCGAC | 1 cut(s) | 1673 |
| SapI | GCTCTTC | 1 cut(s) | 1641 |
| SaqAI | TTAA | 7 cut(s) | 27, 180, 221, 633, 737, 1215, 1530 |
| Sau3AI | GATC | 6 cut(s) | 59, 791, 832, 925, 1358, 1409 |
| Sau96I | GGNCC | 1 cut(s) | 36 |
| ScaI | AGTACT | 1 cut(s) | 986 |
| SchI | GAGTC | 2 cut(s) | 1477, 1627 |
| ScrFI | CCNGG | 1 cut(s) | 847 |
| SfaNI | GCATC | 3 cut(s) | 1081, 1087, 1471 |
| SfcI | CTRYAG | 2 cut(s) | 826, 1449 |
| Sfr303I | CCGCGG | 1 cut(s) | 1209 |
| SgrBI | CCGCGG | 1 cut(s) | 1209 |
| SgrDI | CGTCGACG | 1 cut(s) | 1673 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 269 |
| SmlI | CTYRAG | 1 cut(s) | 220 |
| SmoI | CTYRAG | 1 cut(s) | 220 |
| SsiI | CCGC | 5 cut(s) | 15, 689, 881, 1206, 1208 |
| SspI | AATATT | 1 cut(s) | 1405 |
| SspMI | CTAG | 6 cut(s) | 171, 663, 912, 1272, 1386, 1560 |
| StyD4I | CCNGG | 1 cut(s) | 845 |
| StyI | CCWWGG | 2 cut(s) | 911, 1113 |
| TaaI | ACNGT | 2 cut(s) | 906, 1445 |
| TaiI | ACGT | 4 cut(s) | 327, 550, 781, 1680 |
| TaqI | TCGA | 2 cut(s) | 86, 1674 |
| TatI | WGTACW | 4 cut(s) | 984, 1049, 1228, 1549 |
| TfiI | GAWTC | 1 cut(s) | 293 |
| Tru1I | TTAA | 7 cut(s) | 27, 180, 221, 633, 737, 1215, 1530 |
| Tru9I | TTAA | 7 cut(s) | 27, 180, 221, 633, 737, 1215, 1530 |
| TscAI | CASTG | 2 cut(s) | 765, 984 |
| TspGWI | ACGGA | 4 cut(s) | 79, 305, 615, 1093 |
| TspRI | CASTG | 2 cut(s) | 765, 984 |
| Vha464I | CTTAAG | 1 cut(s) | 220 |
| VspI | ATTAAT | 1 cut(s) | 1215 |
| XapI | RAATTY | 1 cut(s) | 193 |
| XceI | RCATGY | 1 cut(s) | 977 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 853 |
| XmaJI | CCTAGG | 1 cut(s) | 911 |
| XmiI | GTMKAC | 2 cut(s) | 1621, 1674 |
| XmnI | GAANNNNTTC | 2 cut(s) | 986, 1123 |
| XspI | CTAG | 6 cut(s) | 171, 663, 912, 1272, 1386, 1560 |
| ZrmI | AGTACT | 1 cut(s) | 986 |