Rw6G005380

dnaJ homolog subfamily C member

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
8599232 .. 8601062
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005380.1

Sequence Viewer

Length: 1692 bp
ATGTCTTCCCCTTCCGCCTTCAATTTTAAGGTTGGGGCCGGCGCAAACAATCCCTCACGATCACGGAGTAAGCAGAACGCGAGTTCGACAGAGGCCAAGCCGTTTTGCTCGGTAAGTGATGGTATTAGCAATATGGAAATTGATAATGATATGTGCTTTGTGTTTGGTTCTAGTCGTTTTAATTCCAATTCAAATTTCAATTCAGGAGGGCATAATTACTTAAGTGGAAATATGGACAAAGCCGAAGTGATTTCTGAAGTTTGCATGAAGATGAAAGTAGAGAGCGAAACGGAATCTGAGCAAGTGGAAACCAATGCTTGCAACGTAGCTAATTCAAAGTGTCAGGGTGAAAATGTAAGCTCTGTTTTTAGTAGTAATAGAATTGCAACTGAGAGACCTTGTGGAGATAATTGTGAAAGTAGTGAAGGTGTTGTTTTTGGAAGCGAGAGTAAAAACTTGCGTACATCAGGTTTTGAAGATATGAAGGGGAAAACTTTTAGATTTTCTGTGGAAGGTAGTTCAGTAAGGAAAAAGCCTCAACGACAACGTAGAGAGAAAAGTAGAATAAAAAATAGGATGAAAGTTGGTCATGATGTATTTGTTATAACTCAGAGTTGCTCTACTCCGTCAGTTAAGGAAGTGGATGTCCCTTCTACTTATGCTAGTCATGAAACCTGTGAAGCCTGTGCGGAGTTCCGAATAAGGGGAAACGAAGCTCATTGCAATAATGATTTTTTAAAAGCAAAAGAGTATTACACACTGGGAATAGTATCTATACGTGCAAGTGAAAGATCAGAATGCTGCCATAAGCGTCTTTCGCTATGCTATAGAGATCGTGCAGCAGCCAGGGTGTCTCTGGGAAGGATAAGGGAAGCTTTAGCGGACGCTTTGATGGCTATTCAACTGTACCCTAGGTTTCCTGAAGATCAAGTTAGGGCTGCAAATTGCCATCTTCTTCTCGGGGAAGTTGAACATGCACTGAAGTACTTCAATGAAGTTGTAATAGATTGTGTTGATGGCATAAAAAAGGCTCAGAAAGTGGCTGGGTGTACAAATCGTTCTGCCACGCTTCTGGAACGGAGAACTACCGATGCCGATGCTGCTCTTAGTGCCTTGGGAATAATTTCTGAGGCTTTGTCGGTTAGCATATACTCGGAAAAGAGGTATGAAGAGGCAATTCAAGTGTGTGAACAAAGTTTCCATTCCGCGGAAATTAATTCATTTCAAGTACAAAGTATGGACGCTTCTGGATGTGAAAATTACCCATTTGCTAGGTTGTGGAGGTGGGTTTTCATTTCCAAATCTTACTTTCAGCTGGGAAGGTTTGGGGCAGCTCTTAGTTTCGTGGAGCAAGTGAGATCTACACAAGACAAGTATCATTATACTAGCGCTTTATCAAACAATATTGGATCTCGCCCATTTGCTGCAATTTGTTTGTGCAACCGTGCTGCAGCACTCCAAGCTTTGAGTCAAATTATGGATGCCATTGCAGATTGCAGTCTTGCAATAGCTCTTGATGAAAATTATGTTAAGATGATACGGGACTATGTACAGGCAGCTAGTGATATCCAAAGACTTATATCTATACTGGAAAAGCAAGCTGATGAAAGGCCAAAGAGTCTACCTCAGAAGGCTCTTCCAATGCCTGTGCAAAAAAATTACAGCAGGCTCGTCGACGTTTGCCATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

563

Amino Acids

62.52

Weight (kDa)

7.94

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 605
AccI GTMKAC 2 cut(s) 1621, 1674
AccII CGCG 2 cut(s) 80, 1208
AciI CCGC 5 cut(s) 15, 689, 881, 1206, 1208
AclWI GGATC 1 cut(s) 1417
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 3 cut(s) 276, 942, 1001
AfaI GTAC 6 cut(s) 463, 908, 986, 1051, 1230, 1551
AfeI AGCGCT 1 cut(s) 1390
AfiI CCNNNNNNNGG 2 cut(s) 703, 1207
AflII CTTAAG 1 cut(s) 220
AjnI CCWGG 1 cut(s) 845
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AloI GAACNNNNNNTCC 2 cut(s) 1182, 1214
Alw26I GTCTC 2 cut(s) 388, 858
AlwI GGATC 1 cut(s) 1417
Ama87I CYCGRG 1 cut(s) 959
Aor51HI AGCGCT 1 cut(s) 1390
AoxI GGCC 3 cut(s) 36, 93, 1610
ApoI RAATTY 1 cut(s) 193
AseI ATTAAT 1 cut(s) 1215
Asp700I GAANNNNTTC 2 cut(s) 986, 1123
AspA2I CCTAGG 1 cut(s) 911
AspLEI GCGC 2 cut(s) 44, 1391
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 959
AvrII CCTAGG 1 cut(s) 911
BarI GAAGNNNNNNTAC 2 cut(s) 1228, 1260
BccI CCATC 4 cut(s) 113, 886, 957, 1010
BceAI ACGGC 1 cut(s) 85
BcgI CGANNNNNNTGC 4 cut(s) 1079, 1113, 1654, 1688
BciT130I CCWGG 1 cut(s) 847
BcoDI GTCTC 2 cut(s) 388, 858
BfaI CTAG 6 cut(s) 171, 663, 912, 1272, 1386, 1560
BfmI CTRYAG 2 cut(s) 826, 1449
BfoI RGCGCY 1 cut(s) 1392
BfrI CTTAAG 1 cut(s) 220
BglII AGATCT 1 cut(s) 1358
BlnI CCTAGG 1 cut(s) 911
BmcAI AGTACT 1 cut(s) 986
Bme1390I CCNGG 1 cut(s) 847
BmeT110I CYCGRG 1 cut(s) 959
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 847
BmrI ACTGGG 1 cut(s) 770
BmsI GCATC 3 cut(s) 1081, 1087, 1471
BmuI ACTGGG 1 cut(s) 770
BplI GAGNNNNNCTC 2 cut(s) 1609, 1641
BsaAI YACGTR 1 cut(s) 779
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 4 cut(s) 846, 911, 1113, 1206
Bsc4I CCNNNNNNNGG 2 cut(s) 703, 1207
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 2 cut(s) 765, 1593
Bse3DI GCAATG 2 cut(s) 718, 1485
BseBI CCWGG 1 cut(s) 847
BseDI CCNNGG 4 cut(s) 846, 911, 1113, 1206
BseGI GGATG 4 cut(s) 582, 649, 1256, 1486
BseLI CCNNNNNNNGG 2 cut(s) 703, 1207
BseMI GCAATG 2 cut(s) 718, 1485
BseMII CTCAG 6 cut(s) 288, 381, 623, 1046, 1119, 1640
BseNI ACTGG 2 cut(s) 765, 1593
BseYI CCCAGC 2 cut(s) 1043, 1315
BsgI GTGCAG 1 cut(s) 858
Bsh1236I CGCG 2 cut(s) 80, 1208
BshFI GGCC 3 cut(s) 38, 95, 1612
BsiHKCI CYCGRG 1 cut(s) 959
BsiSI CCGG 1 cut(s) 39
BslFI GGGAC 2 cut(s) 632, 1556
BslI CCNNNNNNNGG 2 cut(s) 703, 1207
BsmAI GTCTC 2 cut(s) 388, 858
BsmFI GGGAC 2 cut(s) 632, 1556
BsmI GAATGC 1 cut(s) 803
BsnI GGCC 3 cut(s) 38, 95, 1612
Bso31I GGTCTC 1 cut(s) 388
BsoBI CYCGRG 1 cut(s) 959
Bsp1407I TGTACA 2 cut(s) 1049, 1549
Bsp143I GATC 6 cut(s) 59, 791, 832, 925, 1358, 1409
BspACI CCGC 5 cut(s) 15, 689, 881, 1206, 1208
BspANI GGCC 3 cut(s) 38, 95, 1612
BspCNI CTCAG 6 cut(s) 289, 382, 622, 1045, 1120, 1639
BspFNI CGCG 2 cut(s) 80, 1208
BspHI TCATGA 2 cut(s) 589, 667
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 1453
BspPI GGATC 1 cut(s) 1417
BspQI GCTCTTC 1 cut(s) 1641
BspTI CTTAAG 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 388
BsrDI GCAATG 2 cut(s) 718, 1485
BsrFI RCCGGY 1 cut(s) 38
BsrGI TGTACA 2 cut(s) 1049, 1549
BsrI ACTGG 2 cut(s) 765, 1593
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 4 cut(s) 846, 911, 1113, 1206
BssMI GATC 6 cut(s) 59, 791, 832, 925, 1358, 1409
BssT1I CCWWGG 2 cut(s) 911, 1113
Bst2UI CCWGG 1 cut(s) 847
Bst4CI ACNGT 2 cut(s) 906, 1445
Bst6I CTCTTC 2 cut(s) 1164, 1641
BstAFI CTTAAG 1 cut(s) 220
BstAUI TGTACA 2 cut(s) 1049, 1549
BstBAI YACGTR 1 cut(s) 779
BstC8I GCNNGC 4 cut(s) 40, 319, 1599, 1667
BstDEI CTNAG 8 cut(s) 297, 390, 609, 1032, 1106, 1128, 1337, 1626
BstDSI CCRYGG 1 cut(s) 1206
BstF5I GGATG 4 cut(s) 582, 649, 1256, 1486
BstFNI CGCG 2 cut(s) 80, 1208
BstH2I RGCGCY 1 cut(s) 1392
BstHHI GCGC 2 cut(s) 44, 1391
BstKTI GATC 6 cut(s) 62, 794, 835, 928, 1361, 1412
BstMAI GTCTC 2 cut(s) 388, 858
BstMBI GATC 6 cut(s) 59, 791, 832, 925, 1358, 1409
BstMWI GCNNNNNNNGC 5 cut(s) 817, 893, 1100, 1109, 1460
BstNI CCWGG 1 cut(s) 847
BstNSI RCATGY 1 cut(s) 977
BstSCI CCNGG 1 cut(s) 845
BstSFI CTRYAG 2 cut(s) 826, 1449
BstUI CGCG 2 cut(s) 80, 1208
BstX2I RGATCY 2 cut(s) 1358, 1409
BstXI CCANNNNNNTGG 1 cut(s) 1072
BstYI RGATCY 2 cut(s) 1358, 1409
BsuRI GGCC 3 cut(s) 38, 95, 1612
BtgI CCRYGG 1 cut(s) 1206
BtsCI GGATG 4 cut(s) 582, 649, 1256, 1486
BtsIMutI CAGTG 2 cut(s) 758, 977
Cac8I GCNNGC 4 cut(s) 40, 319, 1599, 1667
CciI TCATGA 2 cut(s) 589, 667
CfoI GCGC 2 cut(s) 44, 1391
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 36
Cfr42I CCGCGG 1 cut(s) 1209
CseI GACGC 3 cut(s) 800, 893, 1250
Csp6I GTAC 6 cut(s) 462, 907, 985, 1050, 1229, 1550
CviAII CATG 4 cut(s) 265, 590, 668, 974
CviQI GTAC 6 cut(s) 462, 907, 985, 1050, 1229, 1550
DdeI CTNAG 8 cut(s) 297, 390, 609, 1032, 1106, 1128, 1337, 1626
DpnI GATC 6 cut(s) 61, 793, 834, 927, 1360, 1411
DpnII GATC 6 cut(s) 59, 791, 832, 925, 1358, 1409
DraI TTTAAA 1 cut(s) 738
Eam1104I CTCTTC 2 cut(s) 1164, 1641
EarI CTCTTC 2 cut(s) 1164, 1641
EciI GGCGGA 1 cut(s) 4
Eco130I CCWWGG 2 cut(s) 911, 1113
Eco31I GGTCTC 1 cut(s) 388
Eco32I GATATC 1 cut(s) 1567
Eco47III AGCGCT 1 cut(s) 1390
Eco57I CTGAAG 3 cut(s) 276, 942, 1001
Eco88I CYCGRG 1 cut(s) 959
EcoRII CCWGG 1 cut(s) 845
EcoRV GATATC 1 cut(s) 1567
EcoT14I CCWWGG 2 cut(s) 911, 1113
ErhI CCWWGG 2 cut(s) 911, 1113
FaeI CATG 4 cut(s) 268, 593, 671, 977
FalI AAGNNNNNCTT 2 cut(s) 859, 891
FaqI GGGAC 2 cut(s) 632, 1556
FatI CATG 4 cut(s) 264, 589, 667, 973
FblI GTMKAC 2 cut(s) 1621, 1674
FokI GGATG 4 cut(s) 589, 656, 1263, 1493
FspBI CTAG 6 cut(s) 171, 663, 912, 1272, 1386, 1560
GlaI GCGC 2 cut(s) 43, 1390
GsaI CCCAGC 2 cut(s) 1047, 1319
HaeII RGCGCY 1 cut(s) 1392
HaeIII GGCC 3 cut(s) 38, 95, 1612
HapII CCGG 1 cut(s) 39
HgaI GACGC 3 cut(s) 800, 893, 1250
HhaI GCGC 2 cut(s) 44, 1391
Hin1II CATG 4 cut(s) 268, 593, 671, 977
Hin6I GCGC 2 cut(s) 42, 1389
HinP1I GCGC 2 cut(s) 42, 1389
HincII GTYRAC 1 cut(s) 1675
HindII GTYRAC 1 cut(s) 1675
HindIII AAGCTT 2 cut(s) 873, 1461
HinfI GANTC 3 cut(s) 293, 1468, 1618
HpaII CCGG 1 cut(s) 39
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 4 cut(s) 1050, 1190, 1622, 1675
Hpy188I TCNGA 9 cut(s) 256, 298, 612, 698, 796, 1035, 1129, 1156, 1629
Hpy188III TCNNGA 8 cut(s) 57, 204, 590, 668, 920, 1073, 1248, 1514
Hpy8I GTNNAC 4 cut(s) 1050, 1190, 1622, 1675
Hpy99I CGWCG 2 cut(s) 1676, 1679
HpyAV CCTTC 9 cut(s) 21, 28, 419, 478, 506, 660, 855, 1314, 1624
HpyCH4III ACNGT 2 cut(s) 906, 1445
HpyCH4IV ACGT 4 cut(s) 324, 547, 778, 1677
HpyF10VI GCNNNNNNNGC 5 cut(s) 817, 893, 1100, 1109, 1460
HpyF3I CTNAG 8 cut(s) 297, 390, 609, 1032, 1106, 1128, 1337, 1626
HpySE526I ACGT 4 cut(s) 324, 547, 778, 1677
Hsp92II CATG 4 cut(s) 268, 593, 671, 977
HspAI GCGC 2 cut(s) 42, 1389
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
KspI CCGCGG 1 cut(s) 1209
Kzo9I GATC 6 cut(s) 59, 791, 832, 925, 1358, 1409
LguI GCTCTTC 1 cut(s) 1641
LmnI GCTCC 1 cut(s) 1348
LweI GCATC 3 cut(s) 1081, 1087, 1471
MaeI CTAG 6 cut(s) 171, 663, 912, 1272, 1386, 1560
MaeII ACGT 4 cut(s) 324, 547, 778, 1677
MalI GATC 6 cut(s) 61, 793, 834, 927, 1360, 1411
MboI GATC 6 cut(s) 59, 791, 832, 925, 1358, 1409
MboII GAAGA 7 cut(s) 280, 488, 935, 944, 947, 1181, 1628
MflI RGATCY 2 cut(s) 1358, 1409
MlyI GAGTC 2 cut(s) 1477, 1627
MnlI CCTC 9 cut(s) 64, 85, 200, 546, 1123, 1155, 1165, 1275, 1635
MroNI GCCGGC 1 cut(s) 38
MroXI GAANNNNTTC 2 cut(s) 986, 1123
MseI TTAA 7 cut(s) 27, 180, 221, 633, 737, 1215, 1530
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 2 cut(s) 1208, 1315
MspCI CTTAAG 1 cut(s) 220
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 847
Mva1269I GAATGC 1 cut(s) 803
MvaI CCWGG 1 cut(s) 847
MvnI CGCG 2 cut(s) 80, 1208
MwoI GCNNNNNNNGC 5 cut(s) 817, 893, 1100, 1109, 1460
NaeI GCCGGC 1 cut(s) 40
NdeII GATC 6 cut(s) 59, 791, 832, 925, 1358, 1409
NgoMIV GCCGGC 1 cut(s) 38
NlaIII CATG 4 cut(s) 268, 593, 671, 977
NlaIV GGNNCC 1 cut(s) 37
NspI RCATGY 1 cut(s) 977
PagI TCATGA 2 cut(s) 589, 667
PciSI GCTCTTC 1 cut(s) 1641
PctI GAATGC 1 cut(s) 803
PdiI GCCGGC 1 cut(s) 40
PdmI GAANNNNTTC 2 cut(s) 986, 1123
PfeI GAWTC 1 cut(s) 293
PleI GAGTC 2 cut(s) 1476, 1626
PpsI GAGTC 2 cut(s) 1476, 1626
Ppu21I YACGTR 1 cut(s) 779
PshBI ATTAAT 1 cut(s) 1215
PsiI TTATAA 1 cut(s) 605
Psp6I CCWGG 1 cut(s) 845
PspFI CCCAGC 2 cut(s) 1043, 1315
PspGI CCWGG 1 cut(s) 845
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 36
PsrI GAACNNNNNNTAC 2 cut(s) 1042, 1074
PstI CTGCAG 1 cut(s) 1453
PsuI RGATCY 2 cut(s) 1358, 1409
PvuII CAGCTG 1 cut(s) 1315
RsaI GTAC 6 cut(s) 463, 908, 986, 1051, 1230, 1551
RsaNI GTAC 6 cut(s) 462, 907, 985, 1050, 1229, 1550
RseI CAYNNNNRTG 1 cut(s) 269
SacII CCGCGG 1 cut(s) 1209
SalI GTCGAC 1 cut(s) 1673
SapI GCTCTTC 1 cut(s) 1641
SaqAI TTAA 7 cut(s) 27, 180, 221, 633, 737, 1215, 1530
Sau3AI GATC 6 cut(s) 59, 791, 832, 925, 1358, 1409
Sau96I GGNCC 1 cut(s) 36
ScaI AGTACT 1 cut(s) 986
SchI GAGTC 2 cut(s) 1477, 1627
ScrFI CCNGG 1 cut(s) 847
SfaNI GCATC 3 cut(s) 1081, 1087, 1471
SfcI CTRYAG 2 cut(s) 826, 1449
Sfr303I CCGCGG 1 cut(s) 1209
SgrBI CCGCGG 1 cut(s) 1209
SgrDI CGTCGACG 1 cut(s) 1673
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
SsiI CCGC 5 cut(s) 15, 689, 881, 1206, 1208
SspI AATATT 1 cut(s) 1405
SspMI CTAG 6 cut(s) 171, 663, 912, 1272, 1386, 1560
StyD4I CCNGG 1 cut(s) 845
StyI CCWWGG 2 cut(s) 911, 1113
TaaI ACNGT 2 cut(s) 906, 1445
TaiI ACGT 4 cut(s) 327, 550, 781, 1680
TaqI TCGA 2 cut(s) 86, 1674
TatI WGTACW 4 cut(s) 984, 1049, 1228, 1549
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 7 cut(s) 27, 180, 221, 633, 737, 1215, 1530
Tru9I TTAA 7 cut(s) 27, 180, 221, 633, 737, 1215, 1530
TscAI CASTG 2 cut(s) 765, 984
TspGWI ACGGA 4 cut(s) 79, 305, 615, 1093
TspRI CASTG 2 cut(s) 765, 984
Vha464I CTTAAG 1 cut(s) 220
VspI ATTAAT 1 cut(s) 1215
XapI RAATTY 1 cut(s) 193
XceI RCATGY 1 cut(s) 977
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XmaJI CCTAGG 1 cut(s) 911
XmiI GTMKAC 2 cut(s) 1621, 1674
XmnI GAANNNNTTC 2 cut(s) 986, 1123
XspI CTAG 6 cut(s) 171, 663, 912, 1272, 1386, 1560
ZrmI AGTACT 1 cut(s) 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.