Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003093

Physical Location & Seq

Genomic Coordinates Reverse (-)

5574734 .. 5575372

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG054000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTCTTCCCCTTCCGCCTTCAGTTTTAAGGTTGGGGCCGGCGCAAACAATCCCTCACGATCACGGAGTAAGCAGAACGCGAGTTCGACAGAGGCCAAGCCGTTTTGCTCGGTAAGTGATGGTATTAGCAATATGGAAATTGATAATGATATGTGCTTTGTGTTTGGTTCTAGTCGTTTTAATTCCAATTCAAATTTCAATTCAGGAGGGCATAATTACTTAAGTGGAAATATGGACAAAGCCAAAGTGGTGTCTGAAGTTTGCATGAAGATGAAAGTAGAGAGCGAAACGGAATCTGAGCAAGTGGAAACCAATGCTTGCAACGTAGCTAATTCAAAGTGTCAGGGTGAAACTGTAAGCTCTGTTTTTAGTAGTAATAGAATTGCAACTGAGAGACCTTGTGGAGATAATTGTGAAAGTAGTGAACGTGTTGTTTTTGGAAGAGAGAGTAAAAACTCGTGTACATCAGGTTTTGAAGATATGAAGGGGAAAACTTTTCGATTTTCTGTGGAAGGTAGTTCAGTAAGGGCAAAGTCTCAACGACAACGTAGAGAGAAAAGTAGAACCAAAAATAGGATGAAAGTTGGTCATGATGTATTTGTTATAACTCAGAGTTGCTCTACTCCGTCAGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

212

Amino Acids

23.12

Weight (kDa)

8.88

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41520 AT2G41520 AT2G41520
fragaria_vesca	FvH4_2g04200 FvH4_6g24600 FvH4_6g24600
malus_domestica	MD12G1083200.v1.1 MD14G1078300.v1.1
prunus_persica	Prupe.7G052600_v2.0.a1 Prupe.7G052600_v2.0.a1 Prupe.7G052600_v2.0.a1 Prupe.7G052600_v2.0.a1
pyrus_communis	pycom12g07010
rosa_chinensis	RchiOBHm_Chr3g0483931 RchiOBHm_Chr6g0253551
rosa_laevigata	RLG00000015000 RLG00000023251
rosa_multiflora	Rmu_sc0002252.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398000 Rroxscaffold_7G00211760
rosa_rugosa	Rorug03G0209000 Rorug05G0545000 Rorug05G0545000
rosa_samantha	Rh3AG257600 Rh3BG294400 Rh3CG292200 Rh3DG287400 Rh6AG060100 Rh6AG060200 Rh6AG060300 Rh6BG054200 Rh6CG053900 Rh6CG054000 Rh6DG051400 Rh6DG051500
rosa_wichuraiana	Rw3G023280 Rw6G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
AccII	CGCG	1 cut(s)	80
AciI	CCGC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	193
AcuI	CTGAAG	2 cut(s)	4, 276
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	573
AflII	CTTAAG	1 cut(s)	220
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	4 cut(s)	192, 199, 336, 476
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	2 cut(s)	329, 360
AluI	AGCT	2 cut(s)	329, 360
Alw26I	GTCTC	2 cut(s)	388, 540
AoxI	GGCC	2 cut(s)	36, 93
ApoI	RAATTY	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	359
BauI	CACGAG	1 cut(s)	457
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	388, 540
BfaI	CTAG	1 cut(s)	171
BfrI	CTTAAG	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
Bse118I	RCCGGY	1 cut(s)	38
BseGI	GGATG	1 cut(s)	582
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMII	CTCAG	3 cut(s)	288, 381, 623
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	38, 95
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	573
BsmAI	GTCTC	2 cut(s)	388, 540
BsnI	GGCC	2 cut(s)	38, 95
Bso31I	GGTCTC	1 cut(s)	388
Bsp1407I	TGTACA	1 cut(s)	461
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	2 cut(s)	38, 95
BspCNI	CTCAG	3 cut(s)	289, 382, 622
BspFNI	CGCG	1 cut(s)	80
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	1 cut(s)	37
BspTI	CTTAAG	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	38
BsrGI	TGTACA	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	38
BssMI	GATC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	457
Bst2BI	CACGAG	1 cut(s)	457
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	436
BstAFI	CTTAAG	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	40, 319
BstDEI	CTNAG	3 cut(s)	297, 390, 609
BstF5I	GGATG	1 cut(s)	582
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	1 cut(s)	62
BstMAI	GTCTC	2 cut(s)	388, 540
BstMBI	GATC	1 cut(s)	59
BstUI	CGCG	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	38, 95
BtsCI	GGATG	1 cut(s)	582
Cac8I	GCNNGC	2 cut(s)	40, 319
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	2 cut(s)	265, 590
CviJI	RGCY	6 cut(s)	38, 95, 100, 242, 329, 360
CviKI_1	RGCY	6 cut(s)	38, 95, 100, 242, 329, 360
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	3 cut(s)	297, 390, 609
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
EciI	GGCGGA	1 cut(s)	4
Eco31I	GGTCTC	1 cut(s)	388
Eco57I	CTGAAG	2 cut(s)	4, 276
FaeI	CATG	2 cut(s)	268, 593
FaiI	YATR	8 cut(s)	134, 152, 213, 233, 266, 482, 591, 605
FatI	CATG	2 cut(s)	264, 589
FokI	GGATG	1 cut(s)	589
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	38, 95
HapII	CCGG	1 cut(s)	39
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	268, 593
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	425, 462
Hpy188I	TCNGA	3 cut(s)	256, 298, 612
Hpy188III	TCNNGA	3 cut(s)	57, 204, 590
Hpy8I	GTNNAC	2 cut(s)	425, 462
HpyAV	CCTTC	4 cut(s)	21, 28, 478, 506
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	3 cut(s)	324, 427, 547
HpyCH4V	TGCA	3 cut(s)	264, 321, 386
HpyF3I	CTNAG	3 cut(s)	297, 390, 609
HpySE526I	ACGT	3 cut(s)	324, 427, 547
Hsp92II	CATG	2 cut(s)	268, 593
HspAI	GCGC	1 cut(s)	42
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	59
LpnPI	CCDG	4 cut(s)	52, 189, 329, 453
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	3 cut(s)	324, 427, 547
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	3 cut(s)	280, 453, 488
MnlI	CCTC	3 cut(s)	64, 85, 200
MroNI	GCCGGC	1 cut(s)	38
MseI	TTAA	5 cut(s)	27, 180, 221, 633, 637
MslI	CAYNNNNRTG	1 cut(s)	269
MspCI	CTTAAG	1 cut(s)	220
MspI	CCGG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	80
NaeI	GCCGGC	1 cut(s)	40
NdeII	GATC	1 cut(s)	59
NgoMIV	GCCGGC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	268, 593
NlaIV	GGNNCC	1 cut(s)	37
PacI	TTAATTAA	1 cut(s)	637
PagI	TCATGA	1 cut(s)	589
PdiI	GCCGGC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	293
PsiI	TTATAA	1 cut(s)	605
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	36
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	5 cut(s)	27, 180, 221, 633, 637
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	36
SetI	ASST	9 cut(s)	33, 327, 331, 362, 400, 430, 472, 517, 550
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SsiI	CCGC	1 cut(s)	15
SspMI	CTAG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	3 cut(s)	327, 430, 550
TaqI	TCGA	2 cut(s)	86, 499
TatI	WGTACW	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	5 cut(s)	27, 180, 221, 633, 637
Tru9I	TTAA	5 cut(s)	27, 180, 221, 633, 637
TspDTI	ATGAA	4 cut(s)	281, 287, 497, 593
TspGWI	ACGGA	3 cut(s)	79, 305, 615
Vha464I	CTTAAG	1 cut(s)	220
XapI	RAATTY	1 cut(s)	193
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.