Rh6CG053900

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003093
Physical Location & Seq
Reverse (-)
5572954 .. 5574477
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG053900.1

Sequence Viewer

Length: 1524 bp
ATGGCTATTCAACTGTACCCCGGGTTTCCTGAAGATCGAGTTAGGGCTGCAAATTGCCATCTTCTTCTCGGGGAAGTTGAACATGCACTGAAGTACTTCAATGAGTGCTTGGAATCAAAAAATGATGTGTATTTGGACCGGAGAGTTGTAATAGAGTGTGTTGATGGCATAAAAAAGGCTCAGAAAGTGGTTGAGTGTACAAATCGTTCTGCCACGCTTCTGGAACGGAGAACTACCGAAGCTGCTCTTAGTGCCTTGGGAATAATTTCTGAGGCTTTGTCGGTTAGTATATACTCGGAAAAGTTACTTGAAATGAAAGCAGACACACTGTATTTGTTAAGGAGGTATGAAGAGGCAATTCAAGTGTGTGAACAAAGTTTCCATTCCGCGGAAATTAATTGTTTTCGTGTAGAAAGTATGGATGGTTCTGGATGTAATTACCCATTTGCTGGGTTGTGGAGGTGGGTTTTCATTTCCAAATCTTACTTTCAGCTGGGAAGGTTTGGGGCAGCTCTTAGTTTCGTGGAGCAAGTGAGATCTATACAAGACAAGTATGGAAGTAGGAATATGGAATCATCAATTTCAGCAGCTGTCACCATACGTGAACTGTTAAGCCACAAGACCACAGGTAATGAAGCATTTAAAGCAGGAAGATATACAGAAGCCGCAGAGCAATATACTATTGCTTTATCAAGAAATATTGGATCTCGCCCATTTGCTGCAATTTGTTTGTGCAACCGTGCTGCAGCTCACCAAGCTTTGGGTCAAATTATGGATGCCATTGCAGATTGCAGTCTTGCAATAGCTCTTGATGAAAATTATGGTAAGGCAGTTTCTAGAAGAGCTGCCTTACATGAGATGATACGGGACTACGTACAGGCAGCTAGCAATATCCAAAGACTTATATCTATACTGGAAAAGCAAGCTGATGAAAAGGCCAAAGAGTCTACCTCAGAAGGCTCTTCCAATGCCTGTGCAAAAAAATTACAGCAGGCTCGTCGACGTTTGCCATCAATGAAAGAAAAAGCTAAGAAAGGAATCCCCATGGATTTTAACCTCATTTTGGGGATTAAACCATCTGACACAAGTTCTAATATCAAGAAGGCATACCGCATGGCAGCTCTCAAACATCATCCTGACAAGGCTGGCCAGTTCTTGGGAAGAAATGGGAGTCAAGATGAAGGGCGACTGTGGAAGGAAATCTCTGCCGAGGTTCAGAAAGATGCTGATAGGCTGTTTAAAATGATTGGAGAGGCATATGAAGTACTATCAGACCCAAGCAAGCGCTCAAAATATGATCTCGAGGAGGATATGAGAAAAGCAGCAAATGAAAGAAAGGAACAAAGCAGTCAAAGAAAACCTTCAGATTTCCAGAGTCCTAATAAAACCAGCAGTTGTAGAAAACCTTCATACTTTAATGAGTGTCCAAGCAGACCCAGCAGTTATAGAAGATCTGGTTTTTATAGGTCCCCCTTTGAGAGAACATGTCCGGATGAAAGGGAAAGTTGGAAGTCATATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ TPR_8

Protein Analysis

507

Amino Acids

57.22

Weight (kDa)

8.93

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 354 - 433 3.7e-14 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 449, 760, 1156
AccI GTMKAC 2 cut(s) 947, 1000
AccII CGCG 1 cut(s) 389
AccIII TCCGGA 1 cut(s) 1489
AciI CCGC 4 cut(s) 387, 389, 666, 1111
AclWI GGATC 1 cut(s) 712
AcoI YGGCCR 1 cut(s) 1147
AcuI CTGAAG 3 cut(s) 51, 110, 1347
AfaI GTAC 5 cut(s) 17, 95, 199, 876, 1266
AfeI AGCGCT 1 cut(s) 1286
AfiI CCNNNNNNNGG 5 cut(s) 388, 449, 760, 1063, 1156
AflIII ACRYGT 1 cut(s) 1484
AgsI TTSAA 5 cut(s) 11, 80, 100, 311, 362
AloI GAACNNNNNNTCC 2 cut(s) 363, 395
AlwI GGATC 1 cut(s) 712
AlwNI CAGNNNCTG 1 cut(s) 590
Ama87I CYCGRG 3 cut(s) 20, 68, 1301
Aor13HI TCCGGA 1 cut(s) 1489
Aor51HI AGCGCT 1 cut(s) 1286
AoxI GGCC 2 cut(s) 936, 1147
AseI ATTAAT 1 cut(s) 396
Asp700I GAANNNNTTC 4 cut(s) 95, 265, 1360, 1405
AspLEI GCGC 1 cut(s) 1287
AspS9I GGNCC 2 cut(s) 136, 1467
AsuC2I CCSGG 2 cut(s) 21, 22
AsuHPI GGTGA 2 cut(s) 586, 743
AsuNHI GCTAGC 1 cut(s) 884
AvaI CYCGRG 3 cut(s) 20, 68, 1301
AvaII GGWCC 2 cut(s) 136, 1467
BalI TGGCCA 1 cut(s) 1149
BarI GAAGNNNNNNTAC 2 cut(s) 1390, 1422
BccI CCATC 5 cut(s) 66, 158, 416, 1018, 1084
BcgI CGANNNNNNTGC 2 cut(s) 980, 1014
BcnI CCSGG 2 cut(s) 21, 22
BfaI CTAG 2 cut(s) 837, 885
BfmI CTRYAG 1 cut(s) 744
BfoI RGCGCY 1 cut(s) 1288
BglII AGATCT 2 cut(s) 536, 1451
BmcAI AGTACT 2 cut(s) 95, 1266
Bme1390I CCNGG 2 cut(s) 21, 22
Bme18I GGWCC 2 cut(s) 136, 1467
BmeT110I CYCGRG 3 cut(s) 20, 68, 1301
BmgT120I GGNCC 2 cut(s) 136, 1467
BmiI GGNNCC 1 cut(s) 1469
BmrFI CCNGG 2 cut(s) 21, 22
BmsI GCATC 2 cut(s) 766, 1213
BmtI GCTAGC 1 cut(s) 888
BplI GAGNNNNNCTC 2 cut(s) 935, 967
BpuMI CCSGG 2 cut(s) 21, 22
BsaAI YACGTR 2 cut(s) 602, 874
BsaJI CCNNGG 6 cut(s) 19, 20, 255, 387, 1044, 1209
BsaWI WCCGGW 2 cut(s) 138, 1489
Bsc4I CCNNNNNNNGG 5 cut(s) 388, 449, 760, 1063, 1156
Bse1I ACTGG 2 cut(s) 918, 1150
Bse3DI GCAATG 1 cut(s) 780
BseAI TCCGGA 1 cut(s) 1489
BseDI CCNNGG 6 cut(s) 19, 20, 255, 387, 1044, 1209
BseGI GGATG 5 cut(s) 427, 437, 781, 1132, 1498
BseLI CCNNNNNNNGG 5 cut(s) 388, 449, 760, 1063, 1156
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 3 cut(s) 194, 261, 966
BseNI ACTGG 2 cut(s) 918, 1150
BseRI GAGGAG 1 cut(s) 1319
BseYI CCCAGC 3 cut(s) 449, 493, 1436
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 2 cut(s) 938, 1149
BsiHKCI CYCGRG 3 cut(s) 20, 68, 1301
BsiSI CCGG 3 cut(s) 21, 139, 1490
BslFI GGGAC 2 cut(s) 881, 1453
BslI CCNNNNNNNGG 5 cut(s) 388, 449, 760, 1063, 1156
BsmFI GGGAC 2 cut(s) 881, 1453
BsnI GGCC 2 cut(s) 938, 1149
BsoBI CYCGRG 3 cut(s) 20, 68, 1301
Bsp13I TCCGGA 1 cut(s) 1489
Bsp1407I TGTACA 1 cut(s) 197
Bsp143I GATC 5 cut(s) 34, 536, 704, 1297, 1451
Bsp19I CCATGG 1 cut(s) 1044
BspACI CCGC 4 cut(s) 387, 389, 666, 1111
BspANI GGCC 2 cut(s) 938, 1149
BspCNI CTCAG 3 cut(s) 193, 262, 965
BspEI TCCGGA 1 cut(s) 1489
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 1 cut(s) 1469
BspMAI CTGCAG 1 cut(s) 748
BspOI GCTAGC 1 cut(s) 888
BspPI GGATC 1 cut(s) 712
BspQI GCTCTTC 2 cut(s) 835, 967
BsrDI GCAATG 1 cut(s) 780
BsrGI TGTACA 1 cut(s) 197
BsrI ACTGG 2 cut(s) 918, 1150
BssECI CCNNGG 6 cut(s) 19, 20, 255, 387, 1044, 1209
BssMI GATC 5 cut(s) 34, 536, 704, 1297, 1451
BssT1I CCWWGG 2 cut(s) 255, 1044
Bst4CI ACNGT 5 cut(s) 15, 330, 609, 740, 1191
Bst6I CTCTTC 3 cut(s) 345, 835, 967
BstAUI TGTACA 1 cut(s) 197
BstBAI YACGTR 2 cut(s) 602, 874
BstC8I GCNNGC 5 cut(s) 886, 924, 993, 1147, 1283
BstDEI CTNAG 6 cut(s) 180, 248, 270, 515, 952, 1029
BstDSI CCRYGG 2 cut(s) 387, 1044
BstF5I GGATG 5 cut(s) 427, 437, 781, 1132, 1498
BstFNI CGCG 1 cut(s) 389
BstH2I RGCGCY 1 cut(s) 1288
BstHHI GCGC 1 cut(s) 1287
BstKTI GATC 5 cut(s) 37, 539, 707, 1300, 1454
BstMBI GATC 5 cut(s) 34, 536, 704, 1297, 1451
BstMWI GCNNNNNNNGC 4 cut(s) 251, 644, 755, 1437
BstNSI RCATGY 2 cut(s) 86, 1488
BstSCI CCNGG 2 cut(s) 19, 20
BstSFI CTRYAG 1 cut(s) 744
BstSNI TACGTA 1 cut(s) 874
BstUI CGCG 1 cut(s) 389
BstX2I RGATCY 3 cut(s) 536, 704, 1451
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 3 cut(s) 536, 704, 1451
BsuRI GGCC 2 cut(s) 938, 1149
BtgI CCRYGG 2 cut(s) 387, 1044
BtsCI GGATG 5 cut(s) 427, 437, 781, 1132, 1498
BtsIMutI CAGTG 2 cut(s) 86, 326
Cac8I GCNNGC 5 cut(s) 886, 924, 993, 1147, 1283
CaiI CAGNNNCTG 1 cut(s) 590
CfoI GCGC 1 cut(s) 1287
Cfr13I GGNCC 2 cut(s) 136, 1467
Cfr42I CCGCGG 1 cut(s) 390
Cfr9I CCCGGG 1 cut(s) 20
Csp6I GTAC 5 cut(s) 16, 94, 198, 875, 1265
CviAII CATG 5 cut(s) 83, 854, 1045, 1114, 1485
CviQI GTAC 5 cut(s) 16, 94, 198, 875, 1265
DdeI CTNAG 6 cut(s) 180, 248, 270, 515, 952, 1029
DpnI GATC 5 cut(s) 36, 538, 706, 1299, 1453
DpnII GATC 5 cut(s) 34, 536, 704, 1297, 1451
DraI TTTAAA 2 cut(s) 643, 1240
EaeI YGGCCR 1 cut(s) 1147
Eam1104I CTCTTC 3 cut(s) 345, 835, 967
EarI CTCTTC 3 cut(s) 345, 835, 967
Eco105I TACGTA 1 cut(s) 874
Eco130I CCWWGG 2 cut(s) 255, 1044
Eco47I GGWCC 2 cut(s) 136, 1467
Eco47III AGCGCT 1 cut(s) 1286
Eco57I CTGAAG 3 cut(s) 51, 110, 1347
Eco88I CYCGRG 3 cut(s) 20, 68, 1301
EcoO109I RGGNCCY 1 cut(s) 1467
EcoT14I CCWWGG 2 cut(s) 255, 1044
ErhI CCWWGG 2 cut(s) 255, 1044
FaeI CATG 5 cut(s) 86, 857, 1048, 1117, 1488
FalI AAGNNNNNCTT 4 cut(s) 231, 263, 1345, 1377
FaqI GGGAC 2 cut(s) 881, 1453
FatI CATG 5 cut(s) 82, 853, 1044, 1113, 1484
FauNDI CATATG 2 cut(s) 1258, 1516
FblI GTMKAC 2 cut(s) 947, 1000
FokI GGATG 5 cut(s) 434, 444, 788, 1119, 1505
FspBI CTAG 2 cut(s) 837, 885
GlaI GCGC 1 cut(s) 1286
GsaI CCCAGC 3 cut(s) 453, 497, 1440
HaeII RGCGCY 1 cut(s) 1288
HaeIII GGCC 2 cut(s) 938, 1149
HapII CCGG 3 cut(s) 21, 139, 1490
HhaI GCGC 1 cut(s) 1287
Hin1II CATG 5 cut(s) 86, 857, 1048, 1117, 1488
Hin6I GCGC 1 cut(s) 1285
HinP1I GCGC 1 cut(s) 1285
HincII GTYRAC 1 cut(s) 1001
HindII GTYRAC 1 cut(s) 1001
HindIII AAGCTT 1 cut(s) 756
HinfI GANTC 6 cut(s) 113, 572, 944, 1038, 1171, 1375
HpaII CCGG 3 cut(s) 21, 139, 1490
HphI GGTGA 2 cut(s) 586, 743
Hpy166II GTNNAC 5 cut(s) 198, 371, 605, 948, 1001
Hpy188I TCNGA 8 cut(s) 183, 271, 298, 955, 1081, 1218, 1273, 1366
Hpy8I GTNNAC 5 cut(s) 198, 371, 605, 948, 1001
Hpy99I CGWCG 2 cut(s) 1002, 1005
HpyAV CCTTC 7 cut(s) 492, 950, 1096, 1175, 1189, 1371, 1416
HpyCH4III ACNGT 5 cut(s) 15, 330, 609, 740, 1191
HpyCH4IV ACGT 3 cut(s) 601, 873, 1003
HpyCH4V TGCA 9 cut(s) 50, 86, 722, 735, 746, 785, 792, 800, 977
HpyF10VI GCNNNNNNNGC 4 cut(s) 251, 644, 755, 1437
HpyF3I CTNAG 6 cut(s) 180, 248, 270, 515, 952, 1029
HpySE526I ACGT 3 cut(s) 601, 873, 1003
Hsp92II CATG 5 cut(s) 86, 857, 1048, 1117, 1488
HspAI GCGC 1 cut(s) 1285
Kpn2I TCCGGA 1 cut(s) 1489
KspI CCGCGG 1 cut(s) 390
Kzo9I GATC 5 cut(s) 34, 536, 704, 1297, 1451
LguI GCTCTTC 2 cut(s) 835, 967
LmnI GCTCC 1 cut(s) 526
LweI GCATC 2 cut(s) 766, 1213
MaeI CTAG 2 cut(s) 837, 885
MaeII ACGT 3 cut(s) 601, 873, 1003
MaeIII GTNAC 2 cut(s) 303, 592
MalI GATC 5 cut(s) 36, 538, 706, 1299, 1453
MboI GATC 5 cut(s) 34, 536, 704, 1297, 1451
MboII GAAGA 9 cut(s) 44, 53, 56, 362, 663, 852, 954, 1173, 1461
MflI RGATCY 3 cut(s) 536, 704, 1451
MlsI TGGCCA 1 cut(s) 1149
MluNI TGGCCA 1 cut(s) 1149
MlyI GAGTC 3 cut(s) 953, 1180, 1384
MmeI TCCRAC 1 cut(s) 1487
Mox20I TGGCCA 1 cut(s) 1149
MroI TCCGGA 1 cut(s) 1489
MroXI GAANNNNTTC 4 cut(s) 95, 265, 1360, 1405
MscI TGGCCA 1 cut(s) 1149
MseI TTAA 8 cut(s) 338, 396, 611, 642, 1053, 1071, 1239, 1416
Msp20I TGGCCA 1 cut(s) 1149
MspA1I CMGCKG 3 cut(s) 389, 493, 590
MspI CCGG 3 cut(s) 21, 139, 1490
MspR9I CCNGG 2 cut(s) 21, 22
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 4 cut(s) 251, 644, 755, 1437
NciI CCSGG 2 cut(s) 21, 22
NcoI CCATGG 1 cut(s) 1044
NdeI CATATG 2 cut(s) 1258, 1516
NdeII GATC 5 cut(s) 34, 536, 704, 1297, 1451
NheI GCTAGC 1 cut(s) 884
NlaIII CATG 5 cut(s) 86, 857, 1048, 1117, 1488
NlaIV GGNNCC 1 cut(s) 1469
NmeAIII GCCGAG 1 cut(s) 1234
NmuCI GTSAC 1 cut(s) 592
NspI RCATGY 2 cut(s) 86, 1488
PaeR7I CTCGAG 1 cut(s) 1301
PciI ACATGT 1 cut(s) 1484
PciSI GCTCTTC 2 cut(s) 835, 967
PdmI GAANNNNTTC 4 cut(s) 95, 265, 1360, 1405
PfeI GAWTC 3 cut(s) 113, 572, 1038
PflMI CCANNNNNTGG 3 cut(s) 449, 760, 1156
PleI GAGTC 3 cut(s) 952, 1179, 1383
PpsI GAGTC 3 cut(s) 952, 1179, 1383
Ppu21I YACGTR 2 cut(s) 602, 874
PpuMI RGGWCCY 1 cut(s) 1467
PscI ACATGT 1 cut(s) 1484
PshBI ATTAAT 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 1467
PspFI CCCAGC 3 cut(s) 449, 493, 1436
PspN4I GGNNCC 1 cut(s) 1469
PspPI GGNCC 2 cut(s) 136, 1467
PspPPI RGGWCCY 1 cut(s) 1467
PsrI GAACNNNNNNTAC 4 cut(s) 190, 222, 409, 441
PstI CTGCAG 1 cut(s) 748
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 3 cut(s) 536, 704, 1451
PvuII CAGCTG 2 cut(s) 493, 590
RsaI GTAC 5 cut(s) 17, 95, 199, 876, 1266
RsaNI GTAC 5 cut(s) 16, 94, 198, 875, 1265
SacII CCGCGG 1 cut(s) 390
SalI GTCGAC 1 cut(s) 999
SapI GCTCTTC 2 cut(s) 835, 967
SaqAI TTAA 8 cut(s) 338, 396, 611, 642, 1053, 1071, 1239, 1416
Sau3AI GATC 5 cut(s) 34, 536, 704, 1297, 1451
Sau96I GGNCC 2 cut(s) 136, 1467
ScaI AGTACT 2 cut(s) 95, 1266
SchI GAGTC 3 cut(s) 953, 1180, 1384
ScrFI CCNGG 2 cut(s) 21, 22
SfaNI GCATC 2 cut(s) 766, 1213
SfcI CTRYAG 1 cut(s) 744
Sfr274I CTCGAG 1 cut(s) 1301
Sfr303I CCGCGG 1 cut(s) 390
SgrBI CCGCGG 1 cut(s) 390
SgrDI CGTCGACG 1 cut(s) 999
SinI GGWCC 2 cut(s) 136, 1467
SlaI CTCGAG 1 cut(s) 1301
SmaI CCCGGG 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 1301
SmoI CTYRAG 1 cut(s) 1301
SnaBI TACGTA 1 cut(s) 874
SsiI CCGC 4 cut(s) 387, 389, 666, 1111
SspI AATATT 1 cut(s) 700
SspMI CTAG 2 cut(s) 837, 885
StyD4I CCNGG 2 cut(s) 19, 20
StyI CCWWGG 2 cut(s) 255, 1044
TaaI ACNGT 5 cut(s) 15, 330, 609, 740, 1191
TaiI ACGT 3 cut(s) 604, 876, 1006
TaqI TCGA 3 cut(s) 37, 1000, 1302
TatI WGTACW 3 cut(s) 93, 197, 1264
TauI GCSGC 1 cut(s) 668
TfiI GAWTC 3 cut(s) 113, 572, 1038
Tru1I TTAA 8 cut(s) 338, 396, 611, 642, 1053, 1071, 1239, 1416
Tru9I TTAA 8 cut(s) 338, 396, 611, 642, 1053, 1071, 1239, 1416
TscAI CASTG 2 cut(s) 93, 333
TseFI GTSAC 1 cut(s) 592
Tsp45I GTSAC 1 cut(s) 592
TspGWI ACGGA 1 cut(s) 241
TspMI CCCGGG 1 cut(s) 20
TspRI CASTG 2 cut(s) 93, 333
Van91I CCANNNNNTGG 3 cut(s) 449, 760, 1156
VpaK11BI GGWCC 2 cut(s) 136, 1467
VspI ATTAAT 1 cut(s) 396
XbaI TCTAGA 1 cut(s) 836
XceI RCATGY 2 cut(s) 86, 1488
XhoI CTCGAG 1 cut(s) 1301
XmaI CCCGGG 1 cut(s) 20
XmiI GTMKAC 2 cut(s) 947, 1000
XmnI GAANNNNTTC 4 cut(s) 95, 265, 1360, 1405
XspI CTAG 2 cut(s) 837, 885
ZrmI AGTACT 2 cut(s) 95, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.