Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003093

Physical Location & Seq

Genomic Coordinates Reverse (-)

9035534 .. 9036268

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG060300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCTTCCCCTTCCGCCTTCAATTTTAAGGTTGGGGCCGGCGCAAACAATCCATCACGATCACGGAGTAAGCAGAACGCGAGTTCGACAGAGGCCAAGCCGCTTTGCTCGGTAAGTGATGGTATTAGCAACATGAAAATTGATAATGATATGTGCTTTGTGTTTGGTTCTAGTCGTTTTAATTCCAATTCAAATTTCAATTCAGGAGGGCATAATTACTTAAGTGGAAATATGGACAAAGCCAAAGTGGTTTCTGAAGTTTGCATGAAGATGAAAGTAGAGAGCGAAACGGAATCTGAGCAAGTGGAAACCAATGCTTGCAACGTATCTAATTCAAAGTGTCAGGGTGAAAATGTAAGCTCTGTTTTTAGTAGTAATAGAATTGCAACTGAGAGACCTTGTGGAGATAATTGTGAAAGTAGTGAACCTTTTGTTTTTGGAAGCGAGAGTAAAAACTTGTGTACAACAGGTTTTGAAGATATGAAGGGGAAAACTTTTCGATTTTCTGTGGAAGGTTCAGTAAGGGCAAAGCCTCAACGACAACGTAGAGAGAAAAGTAGAACGAAAAATAGGATGAAAGTTGGTCATGATGTATTTGTTATAACTCCGAGTTGCTCTACTCCGTCAGTTAAGGAAGTGGATGTCCCTTCTACTTATGCTAGTCATGAAACCTGTGAAGCCTGTGCGGAGTTTCGAATCAGGGGAAACGAGCTCATTGCAATAATGATTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

244

Amino Acids

26.7

Weight (kDa)

8.27

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41520 AT2G41520 AT2G41520
fragaria_vesca	FvH4_2g04200 FvH4_6g24600 FvH4_6g24600
malus_domestica	MD12G1083200.v1.1 MD14G1078300.v1.1
prunus_persica	Prupe.7G052600_v2.0.a1 Prupe.7G052600_v2.0.a1 Prupe.7G052600_v2.0.a1 Prupe.7G052600_v2.0.a1
pyrus_communis	pycom12g07010
rosa_chinensis	RchiOBHm_Chr3g0483931 RchiOBHm_Chr6g0253551
rosa_laevigata	RLG00000015000 RLG00000023251
rosa_multiflora	Rmu_sc0002252.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398000 Rroxscaffold_7G00211760
rosa_rugosa	Rorug03G0209000 Rorug05G0545000 Rorug05G0545000
rosa_samantha	Rh3AG257600 Rh3BG294400 Rh3CG292200 Rh3DG287400 Rh6AG060100 Rh6AG060200 Rh6AG060300 Rh6BG054200 Rh6CG053900 Rh6CG054000 Rh6DG051400 Rh6DG051500
rosa_wichuraiana	Rw3G023280 Rw6G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
AccII	CGCG	1 cut(s)	80
AciI	CCGC	3 cut(s)	15, 101, 686
AcsI	RAATTY	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	463
AflII	CTTAAG	1 cut(s)	220
AgsI	TTSAA	5 cut(s)	22, 192, 199, 336, 476
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	2 cut(s)	360, 712
AluI	AGCT	2 cut(s)	360, 712
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	1 cut(s)	388
AoxI	GGCC	2 cut(s)	36, 93
ApoI	RAATTY	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	359
AsuII	TTCGAA	1 cut(s)	694
BanII	GRGCYC	1 cut(s)	714
Bbv12I	GWGCWC	1 cut(s)	714
BccI	CCATC	2 cut(s)	61, 113
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	2 cut(s)	171, 660
BfrI	CTTAAG	1 cut(s)	220
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	694
BsaI	GGTCTC	1 cut(s)	388
Bse118I	RCCGGY	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	714
BseGI	GGATG	2 cut(s)	579, 646
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	2 cut(s)	288, 381
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	38, 95
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	629
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	2 cut(s)	38, 95
Bso31I	GGTCTC	1 cut(s)	388
Bsp119I	TTCGAA	1 cut(s)	694
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp1407I	TGTACA	1 cut(s)	461
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	3 cut(s)	15, 101, 686
BspANI	GGCC	2 cut(s)	38, 95
BspCNI	CTCAG	2 cut(s)	289, 382
BspFNI	CGCG	1 cut(s)	80
BspHI	TCATGA	2 cut(s)	586, 664
BspLI	GGNNCC	1 cut(s)	37
BspT104I	TTCGAA	1 cut(s)	694
BspTI	CTTAAG	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	38
BsrGI	TGTACA	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	38
BssMI	GATC	1 cut(s)	59
BstAFI	CTTAAG	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	461
BstBI	TTCGAA	1 cut(s)	694
BstC8I	GCNNGC	2 cut(s)	40, 319
BstDEI	CTNAG	2 cut(s)	297, 390
BstF5I	GGATG	2 cut(s)	579, 646
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	1 cut(s)	62
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	59
BstUI	CGCG	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	38, 95
BtsCI	GGATG	2 cut(s)	579, 646
Cac8I	GCNNGC	2 cut(s)	40, 319
CciI	TCATGA	2 cut(s)	586, 664
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	4 cut(s)	133, 265, 587, 665
CviJI	RGCY	8 cut(s)	38, 95, 100, 242, 360, 532, 680, 712
CviKI_1	RGCY	8 cut(s)	38, 95, 100, 242, 360, 532, 680, 712
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	2 cut(s)	297, 390
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	712
Eco24I	GRGCYC	1 cut(s)	714
Eco31I	GGTCTC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	714
FaeI	CATG	4 cut(s)	136, 268, 590, 668
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	4 cut(s)	132, 264, 586, 664
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	2 cut(s)	586, 653
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	2 cut(s)	171, 660
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	38, 95
HapII	CCGG	1 cut(s)	39
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	4 cut(s)	136, 268, 590, 668
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	293, 696
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	425, 462
Hpy188I	TCNGA	3 cut(s)	256, 298, 609
Hpy188III	TCNNGA	4 cut(s)	57, 204, 587, 665
Hpy8I	GTNNAC	2 cut(s)	425, 462
HpyAV	CCTTC	5 cut(s)	21, 28, 478, 506, 657
HpyCH4IV	ACGT	2 cut(s)	324, 544
HpyCH4V	TGCA	4 cut(s)	264, 321, 386, 719
HpyF3I	CTNAG	2 cut(s)	297, 390
HpySE526I	ACGT	2 cut(s)	324, 544
Hsp92II	CATG	4 cut(s)	136, 268, 590, 668
HspAI	GCGC	1 cut(s)	42
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	59
LpnPI	CCDG	7 cut(s)	52, 189, 329, 453, 685, 685, 694
MaeI	CTAG	2 cut(s)	171, 660
MaeII	ACGT	2 cut(s)	324, 544
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	2 cut(s)	280, 488
MhlI	GDGCHC	1 cut(s)	714
MnlI	CCTC	3 cut(s)	85, 200, 543
MroNI	GCCGGC	1 cut(s)	38
MseI	TTAA	5 cut(s)	27, 180, 221, 630, 733
MslI	CAYNNNNRTG	1 cut(s)	269
MspCI	CTTAAG	1 cut(s)	220
MspI	CCGG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	80
NaeI	GCCGGC	1 cut(s)	40
NdeII	GATC	1 cut(s)	59
NgoMIV	GCCGGC	1 cut(s)	38
NlaIII	CATG	4 cut(s)	136, 268, 590, 668
NlaIV	GGNNCC	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	694
PagI	TCATGA	2 cut(s)	586, 664
PdiI	GCCGGC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	293, 696
PkrI	GCNGC	1 cut(s)	102
PsiI	TTATAA	1 cut(s)	602
Psp124BI	GAGCTC	1 cut(s)	714
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	36
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	714
SaqAI	TTAA	5 cut(s)	27, 180, 221, 630, 733
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	714
SfuI	TTCGAA	1 cut(s)	694
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SsiI	CCGC	3 cut(s)	15, 101, 686
SspMI	CTAG	2 cut(s)	171, 660
SstI	GAGCTC	1 cut(s)	714
TaiI	ACGT	2 cut(s)	327, 547
TaqI	TCGA	3 cut(s)	86, 499, 694
TatI	WGTACW	1 cut(s)	461
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	293, 696
Tru1I	TTAA	5 cut(s)	27, 180, 221, 630, 733
Tru9I	TTAA	5 cut(s)	27, 180, 221, 630, 733
TspDTI	ATGAA	6 cut(s)	149, 281, 287, 497, 590, 681
TspGWI	ACGGA	3 cut(s)	79, 305, 612
Vha464I	CTTAAG	1 cut(s)	220
XapI	RAATTY	1 cut(s)	193
XspI	CTAG	2 cut(s)	171, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.